FC920219

Overview
NameFC920219
Unique NameFC920219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB3_ECHMU (Tubulin beta-3 chain OS=Echinococcus multilocularis GN=TUB-3 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.468e-35
Identity = 74/192 (38.54%), Postives = 107/192 (55.73%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + +  GQ G Q+G+  WE    EHGI   G    D  +    +  N +++E   GK+VPRA+ +DLEP  +D VR+G   +LF P+  I G+  A NN+A+GHYT G E+++  LD +RK  + C  LQGF + H++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MRELVHMQAGQCGNQIGSKFWETISQEHGIDEMGSYHGDSDLQL--ERINVYYNEGQGGKYVPRALLIDLEPGTMDSVRSGPLGKLFRPDNFIFGQSGAGNNWAKGHYTEGAELIEEVLDVVRKECEACDCLQGFQLCHSLGGGTGSGMGTLLIAKIREEYPDRIMTSFSVVPSPKVSDTVVEPYNATLSVH 190          

HSP 2 Score: 25.409 bits (54), Expect = 7.468e-35
Identity = 12/23 (52.17%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V  TD +  +DNE++YDI
Sbjct:  189 VHQL-VESTDETFCIDNEALYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_COCHE (Tubulin beta chain OS=Cochliobolus heterostrophus GN=TUB1 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.726e-35
Identity = 75/192 (39.06%), Postives = 108/192 (56.25%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + +  GQ G Q+G A W+    EHG+  DG  + + T     +  N +F+E    K VPRAV +DLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + H++                  ++  +    ++V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGL--DGSGVYNGTSDLQLERMNVYFNEASNNKFVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATYSVVPSPKVSDTVVEPYNATLSIH 190          

HSP 2 Score: 24.2534 bits (51), Expect = 9.726e-35
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            +H L V ++D +  +DNE++YDI
Sbjct:  189 IHQL-VENSDETFCIDNEALYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_METAN (Tubulin beta chain OS=Metarhizium anisopliae PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.726e-35
Identity = 74/192 (38.54%), Postives = 109/192 (56.77%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + +  GQ G Q+G A W+    EHG+  +G  + + T     +  + +F+E    K+VPRAV +DLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + H++                  ++  +    F+V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDSNG--VYNGTSELQLERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVH 190          

HSP 2 Score: 24.6386 bits (52), Expect = 9.726e-35
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V ++D +  +DNE++YDI
Sbjct:  189 VHQL-VENSDETFCIDNEALYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_GIBFU (Tubulin beta chain OS=Gibberella fujikuroi GN=TUB2 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.727e-35
Identity = 74/192 (38.54%), Postives = 109/192 (56.77%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + +  GQ G Q+G A W+    EHG+  +G  + + T     +  + +F+E    K+VPRAV +DLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + H++                  ++  +    F+V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDSNG--VYNGTSELQLERMSVYFNERSGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVH 190          

HSP 2 Score: 24.6386 bits (52), Expect = 9.727e-35
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V ++D +  +DNE++YDI
Sbjct:  189 VHQL-VENSDETFCIDNEALYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB1_SUIBO (Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.727e-35
Identity = 78/192 (40.62%), Postives = 108/192 (56.25%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + I  GQ G Q+G   WE+   EHGI+ DG  L   T     +  + +++E G+ K+VPRAV +DLEP  +D VR+G    LF P+  I G+  A NN+A+GHYT G E+VD  LD +RK A+    LQGF + H++                  +Y  +    ++V PSP VS +VVEPYN+ LS H
Sbjct:    1 MREIVHIQTGQCGNQIGAKFWEVVSDEHGIERDG--LYKGTNDMQLERISVYYNEIGSNKYVPRAVLVDLEPGTMDSVRSGPLGGLFRPDNFIFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGTDCLQGFQITHSLGGGTGAGMGTLLMSKIREEYPDRMMCTYSVVPSPAVSDTVVEPYNATLSVH 190          

HSP 2 Score: 24.6386 bits (52), Expect = 9.727e-35
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V ++D +  +DNE++YDI
Sbjct:  189 VHQL-VENSDETFCIDNEALYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB2_COLGR (Tubulin beta-2 chain OS=Colletotrichum graminicola GN=TUB2 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.267e-34
Identity = 74/192 (38.54%), Postives = 109/192 (56.77%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + +  GQ G Q+G A W+    EHG+  +G  + + T     +  + +F+E    K+VPRAV +DLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + H++                  ++  +    F+V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQNISGEHGLDSNG--VYNGTSELQLERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVH 190          

HSP 2 Score: 24.6386 bits (52), Expect = 1.267e-34
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V ++D +  +DNE++YDI
Sbjct:  189 VHQL-VENSDETFCIDNEALYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB2_COLGL (Tubulin beta-2 chain OS=Colletotrichum gloeosporioides GN=TUB2 PE=3 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.267e-34
Identity = 74/192 (38.54%), Postives = 109/192 (56.77%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + +  GQ G Q+G A W+    EHG+  +G  + + T     +  + +F+E    K+VPRAV +DLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + H++                  ++  +    F+V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQNISGEHGLDSNG--VYNGTSELQLERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVH 190          

HSP 2 Score: 24.6386 bits (52), Expect = 1.267e-34
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V ++D +  +DNE++YDI
Sbjct:  189 VHQL-VENSDETFCIDNEALYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB1_COLGL (Tubulin beta-1 chain OS=Colletotrichum gloeosporioides GN=TUB1 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.267e-34
Identity = 75/195 (38.46%), Postives = 106/195 (54.36%), Query Frame = 2
Query:   53 MRECISIHIGQA---GIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE I +  GQ    G QVG A W+    EHG+  DG    + T     D  + +F+E    K+VPRAV +DLEP  +D +R+G     F P+ ++ G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + H++                  ++  +    F+V PSP+VS  VVEPYN+ LS H
Sbjct:    1 MREIIHLQTGQCLIQGNQVGTAFWQTIHHEHGLDHDGYFRGESTQQS--DRLSVYFAEASNNKYVPRAVLVDLEPATMDAIRSGPLGNFFRPDNMVHGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAETCDSLQGFQITHSLGGGTGSGMGTLLIAKVREEFPDRMMATFSVLPSPKVSEVVVEPYNATLSVH 193          

HSP 2 Score: 24.6386 bits (52), Expect = 1.267e-34
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V ++D +  +DNE++YDI
Sbjct:  192 VHQL-VENSDETFCIDNEALYDI 213          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_PESMI (Tubulin beta chain OS=Pestalotiopsis microspora GN=TUBB PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.267e-34
Identity = 74/192 (38.54%), Postives = 109/192 (56.77%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + +  GQ G Q+G A W+    EHG+  +G  + + T     +  + +F+E    K+VPRAV +DLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + H++                  ++  +    F+V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGLDSNG--VYNGTSELQLERMSVYFNEASGNKYVPRAVLVDLEPGTMDAVRAGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEACDCLQGFQITHSLGGGTGAGMGTLLISKIREEFPDRMMATFSVVPSPKVSDTVVEPYNATLSVH 190          

HSP 2 Score: 24.6386 bits (52), Expect = 1.267e-34
Identity = 11/23 (47.83%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V ++D +  +DNE++YDI
Sbjct:  189 VHQL-VENSDETFCIDNEALYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_ENCHE (Tubulin beta chain OS=Encephalitozoon hellem GN=TUB2 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.800e-34
Identity = 78/195 (40.00%), Postives = 108/195 (55.38%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAF---NTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE I +  GQ G QVG   WE    EHGI   G     K VG  D+     N +++E  + K+VPRAV +DLEP  +D VR G +  LF P+  + G+  A NN+A+GHYT G E++D  +D +RK A++   LQGF + H++                  D+  +    F+V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIIHLQTGQCGNQVGCKFWETISGEHGIDQTG-----KYVGTSDNQLERVNVYYNEASSKKYVPRAVLIDLEPGTMDAVRQGPFGDLFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVMDVVRKEAESSDCLQGFQITHSLGGGTGAGMGTLLLSKIREDFPDRMICTFSVVPSPKVSDTVVEPYNATLSIH 190          

HSP 2 Score: 23.8682 bits (50), Expect = 2.800e-34
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            +H L V + D +  +DNE++YDI
Sbjct:  189 IHQL-VENADETFCIDNEALYDI 210          
The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
TBB3_ECHMU7.468e-3538.54Tubulin beta-3 chain OS=Echinococcus multiloculari... [more]
TBB_COCHE9.726e-3539.06Tubulin beta chain OS=Cochliobolus heterostrophus ... [more]
TBB_METAN9.726e-3538.54Tubulin beta chain OS=Metarhizium anisopliae PE=3 ... [more]
TBB_GIBFU9.727e-3538.54Tubulin beta chain OS=Gibberella fujikuroi GN=TUB2... [more]
TBB1_SUIBO9.727e-3540.63Tubulin beta-1 chain OS=Suillus bovinus GN=TUBB1 P... [more]
TBB2_COLGR1.267e-3438.54Tubulin beta-2 chain OS=Colletotrichum graminicola... [more]
TBB2_COLGL1.267e-3438.54Tubulin beta-2 chain OS=Colletotrichum gloeosporio... [more]
TBB1_COLGL1.267e-3438.46Tubulin beta-1 chain OS=Colletotrichum gloeosporio... [more]
TBB_PESMI1.267e-3438.54Tubulin beta chain OS=Pestalotiopsis microspora GN... [more]
TBB_ENCHE2.800e-3440.00Tubulin beta chain OS=Encephalitozoon hellem GN=TU... [more]

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Properties
Property NameValue
Genbank descriptionC32005E05EF RVDevelop1 Citrus clementina cDNA clone C32005E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bp
GACTCTTAATCTCGCAATTCCCGACTCAAATCTCTAACAAAATCACACAA
GAATGAGAGAATGCATCTCAATTCACATCGGCCAGGCCGGTATCCAGGTT
GGTAATGCCTGCTGGGAGCTCTATTGCCTCGAACATGGCATTCAGCCTGA
TGGGCAAATGTTAAGTGACAAAACAGTTGGAGGCGGAGATGATGCTTTCA
ACACATTCTTCAGTGAGACCGGCGCCGGAAAGCACGTTCCACGCGCCGTG
TTTTTGGACCTTGAACCAACTGTAATCGATGAAGTGAGGACTGGCGCCTA
CCGTCAGTTGTTTCACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCTG
CTAACAACTTTGCCAGAGGCCACTATACAATTGGGAAAGAGATTGTGGAT
TTGTGCCTTGATAGGATCAGGAAGTTAGCTGATAACTGTACCGGTCTACA
AGGGTTCCTCGTGTTCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTCG
GGTCTTTGCTCCTTGAGAGGCTTTCTGTTGATTACGGCAAGAAATCGAAA
CTGGGATTTACAGTTTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTGA
GCCTTACAACAGCGTTTTGTCCACTCACTCTCTGTTAGACACACTGACGT
TTCTGTGTTGCTTGACAATGAAAGCATCTACGATATTT
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