FC920219

Overview
NameFC920219
Unique NameFC920219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_ENCCU (Tubulin beta chain OS=Encephalitozoon cuniculi GN=TUB2 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.800e-34
Identity = 75/192 (39.06%), Postives = 108/192 (56.25%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE I +  GQ G QVG   WE    EHGI   G+ +   T     +  N +++E  + K+VPRAV +DLEP  +D VR G + +LF P+  + G+  A NN+A+GHYT G E++D  +D +RK A++   LQGF + H++                  D+  +    F+V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIIHLQTGQCGNQVGCKFWETISGEHGIDQTGRYVG--TSDNQLERINVYYNEASSKKYVPRAVLIDLEPGTMDAVRQGPFGELFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVMDVVRKEAESSDCLQGFQITHSLGGGTGAGMGTLLLSKIREDFPDRMICTFSVVPSPKVSDTVVEPYNATLSIH 190          

HSP 2 Score: 23.8682 bits (50), Expect = 2.800e-34
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            +H L V + D +  +DNE++YDI
Sbjct:  189 IHQL-VENADETFCIDNEALYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB2_PHYPO (Tubulin beta-2 chain OS=Physarum polycephalum GN=BETC PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 4.748e-34
Identity = 72/192 (37.50%), Postives = 106/192 (55.21%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + + +GQ G QVG   WE+   EHGI   G    D  +    +  N +++E    K+VPRAV +DLEP V+D +R  +   +F P+     +  A NN+A+GHYT G E+V+  +D +RK A+NC  LQGF + H++                  ++  +    F+V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVHVQVGQCGNQVGAKFWEVVSEEHGIDSAGTYKGDTDLQL--ERINVYYNEVAGSKYVPRAVLVDLEPGVLDSIRASSIGSMFRPDNFTHAQSGAGNNWAKGHYTEGAELVESVVDVVRKEAENCDCLQGFQICHSLGGGTGSGLGTLLISKIREEFPDRMMCTFSVMPSPKVSDTVVEPYNATLSIH 190          

HSP 2 Score: 23.483 bits (49), Expect = 4.748e-34
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            +H L V + D  + +DNE++YDI
Sbjct:  189 IHQL-VENADEVMCIDNEALYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_ENCIN (Tubulin beta chain OS=Encephalitozoon intestinalis GN=TUB2 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 6.186e-34
Identity = 75/192 (39.06%), Postives = 108/192 (56.25%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE I +  GQ G QVG   WE    EHGI   G+ +   T     +  N +++E  + K+VPRAV +DLEP  +D VR G + +LF P+  + G+  A NN+A+GHYT G E++D  +D +RK A++   LQGF + H++                  D+  +    F+V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIIHLQTGQCGNQVGCKFWETISGEHGIDQSGRYVG--TSDNQLERVNVYYNEASSKKYVPRAVLIDLEPGTMDAVRQGPFGELFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVMDVVRKEAESSDCLQGFQITHSLGGGTGAGMGTLLLSKIREDFPDRMICTFSVVPSPKVSDTVVEPYNATLSIH 190          

HSP 2 Score: 22.7126 bits (47), Expect = 6.186e-34
Identity = 9/23 (39.13%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            +H L V + D +  +DNE++YD+
Sbjct:  189 IHQL-VENADETFCIDNEALYDM 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_PORYE (Tubulin beta chain OS=Porphyra yezoensis GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.049e-33
Identity = 74/195 (37.95%), Postives = 108/195 (55.38%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + I  GQ G Q+G   WE+   EHGI   G       +G  D   D    +++E   G++VPRAV +DLEP V+D ++ G +  L+ P+  ++G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF V H++                  ++  +    ++V PSP+VS +VVEPYN  LS H
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISEEHGIDSSGAY-----IGTSDLQLDRAEVYYNEGSGGRYVPRAVLVDLEPGVLDTIKAGPHGGLYRPDNFVAGQSGAGNNWAKGHYTEGAELVDSVLDVVRREAEGCDCLQGFQVTHSLGGGTGSGMGTLLVSKIREEFPDRMMCTYSVMPSPKVSDTVVEPYNCTLSVH 190          

HSP 2 Score: 21.9422 bits (45), Expect = 1.049e-33
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V + D    +DNE++Y+I
Sbjct:  189 VHQL-VENADAVFCIDNEALYNI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB8_PANTR (Tubulin beta-8 chain OS=Pan troglodytes GN=TUBB8 PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.366e-33
Identity = 73/192 (38.02%), Postives = 109/192 (56.77%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE +   IGQ G Q+G   WE+   EH I   G    D  +    +  N +++E   G++VPRAV +DLEP  +D VR+G + Q+F P+  I G+  A NN+A+GHYT G E+++  +D +RK A++C  LQGF + H++                  +Y  +    F++ PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVLTQIGQCGNQIGAKFWEVISDEHAINSAGTYHGDSHLQL--ERINVYYNEASGGRYVPRAVLVDLEPGTMDSVRSGPFGQVFRPDNFIFGQCGAGNNWAKGHYTEGAELMESVMDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRIINTFSILPSPKVSDTVVEPYNATLSVH 190          

HSP 2 Score: 23.8682 bits (50), Expect = 1.366e-33
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L + + D +  +DNE++YDI
Sbjct:  189 VHQL-IENADETFCIDNEALYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB8_HUMAN (Tubulin beta-8 chain OS=Homo sapiens GN=TUBB8 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.366e-33
Identity = 73/192 (38.02%), Postives = 109/192 (56.77%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE +   IGQ G Q+G   WE+   EH I   G    D  +    +  N +++E   G++VPRAV +DLEP  +D VR+G + Q+F P+  I G+  A NN+A+GHYT G E+++  +D +RK A++C  LQGF + H++                  +Y  +    F++ PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVLTQIGQCGNQIGAKFWEVISDEHAIDSAGTYHGDSHLQL--ERINVYYNEASGGRYVPRAVLVDLEPGTMDSVRSGPFGQVFRPDNFIFGQCGAGNNWAKGHYTEGAELMESVMDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRIINTFSILPSPKVSDTVVEPYNATLSVH 190          

HSP 2 Score: 23.8682 bits (50), Expect = 1.366e-33
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L + + D +  +DNE++YDI
Sbjct:  189 VHQL-IENADETFCIDNEALYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBBN_GUITH (Tubulin beta chain, nucleomorph OS=Guillardia theta GN=tubB PE=3 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.367e-33
Identity = 69/192 (35.94%), Postives = 106/192 (55.21%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + + +GQ G Q+G   WE+   EHG+  +G    +K      +  + +++E    + VPRAV +DLEP  +D VR   Y +LF P+  + G+  A NN+A+GHYT G E+++  +D IRK ++ C  LQGF + H++                  +Y  +    ++V PSP+VS +VVEPYN  LS H
Sbjct:    1 MREIVHVQVGQCGNQIGAKFWEVISHEHGVDTNGTYFGNKD--NQIEKIDVYYNEVSGNRFVPRAVLVDLEPGTMDSVRASNYGRLFRPDNFVFGQSGAGNNWAKGHYTEGAELIESAMDIIRKESEQCECLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMMCTYSVVPSPKVSDTVVEPYNCTLSIH 190          

HSP 2 Score: 22.7126 bits (47), Expect = 1.367e-33
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            +H L V + D    +DNE++YDI
Sbjct:  189 IHQL-VENADEVFCIDNEALYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_BOMMO (Tubulin beta chain OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.529e-33
Identity = 70/192 (36.46%), Postives = 110/192 (57.29%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + + +G+ G Q+G+  WE+   EHGI P G+   D  +    +  N +++E    K+VPRAV +DLEP+ +D +R G Y  L+ P+ ++ G   A NN+A+GHYT G ++++  LD +RK A+ C  LQGF + H++                  +Y  +    ++V PSP VS +VVEPYN+ LS +
Sbjct:    1 MREIVHVQVGRCGNQIGSKFWEVISDEHGIDPCGRYHGDSDLQL--ERINVYYNEAFGAKYVPRAVLVDLEPSTMDSIRGGPYGSLYRPDNVVCGASGAGNNWAKGHYTEGADLLETVLDVVRKEAEGCDCLQGFQLVHSLGGGTGSGMGTLLLANLTDEYPDRITATYSVVPSPTVSETVVEPYNATLSVN 190          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_EUGGR (Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.997e-33
Identity = 74/196 (37.76%), Postives = 109/196 (55.61%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDA----FNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + I  GQ G Q+G+  WE+   E G+ P         + G  D      N +++E   G++VP A+ +DLEP  +D VR G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A++C  LQGF + H++                  +Y  +  + F+V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVHIQAGQCGNQIGSKFWEVISDEQGVDPPD-------IPGDSDLQLERINVYYNEATGGRYVP-AILMDLEPGTMDSVRAGPYGQIFRPDNFVFGQTGAGNNWAKGHYTEGPELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVIPSPKVSDTVVEPYNTTLSVH 188          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_PORPU (Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.018e-33
Identity = 74/194 (38.14%), Postives = 108/194 (55.67%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM--LSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + I  GQ G Q+G   WE+   EHGI   G     SD  +    D    +++E   G++VPRAV +DLEP V+D ++ G +  L+ P+  ++G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF V H++                  ++  +    ++V PSP+VS +VVEPYN  LS H
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISEEHGIDSSGAYNGTSDLQL----DRAEVYYNEGSGGRYVPRAVLVDLEPGVLDTIKAGPHGGLYRPDNFVAGQSGAGNNWAKGHYTEGAELVDSVLDVVRREAEGCDCLQGFQVTHSLGGGTGSGMGTLLVSKIREEFPDRMMCTYSVMPSPKVSDTVVEPYNCTLSVH 190          

HSP 2 Score: 21.9422 bits (45), Expect = 3.018e-33
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V + D    +DNE++Y+I
Sbjct:  189 VHQL-VENADAVFCIDNEALYNI 210          
The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
TBB_ENCCU2.800e-3439.06Tubulin beta chain OS=Encephalitozoon cuniculi GN=... [more]
TBB2_PHYPO4.748e-3437.50Tubulin beta-2 chain OS=Physarum polycephalum GN=B... [more]
TBB_ENCIN6.186e-3439.06Tubulin beta chain OS=Encephalitozoon intestinalis... [more]
TBB_PORYE1.049e-3337.95Tubulin beta chain OS=Porphyra yezoensis GN=TUBB1 ... [more]
TBB8_PANTR1.366e-3338.02Tubulin beta-8 chain OS=Pan troglodytes GN=TUBB8 P... [more]
TBB8_HUMAN1.366e-3338.02Tubulin beta-8 chain OS=Homo sapiens GN=TUBB8 PE=1... [more]
TBBN_GUITH1.367e-3335.94Tubulin beta chain, nucleomorph OS=Guillardia thet... [more]
TBB_BOMMO1.529e-3336.46Tubulin beta chain OS=Bombyx mori PE=2 SV=1[more]
TBB_EUGGR1.997e-3337.76Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=... [more]
TBB_PORPU3.018e-3338.14Tubulin beta chain OS=Porphyra purpurea GN=TUBB1 P... [more]

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Properties
Property NameValue
Genbank descriptionC32005E05EF RVDevelop1 Citrus clementina cDNA clone C32005E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bp
GACTCTTAATCTCGCAATTCCCGACTCAAATCTCTAACAAAATCACACAA
GAATGAGAGAATGCATCTCAATTCACATCGGCCAGGCCGGTATCCAGGTT
GGTAATGCCTGCTGGGAGCTCTATTGCCTCGAACATGGCATTCAGCCTGA
TGGGCAAATGTTAAGTGACAAAACAGTTGGAGGCGGAGATGATGCTTTCA
ACACATTCTTCAGTGAGACCGGCGCCGGAAAGCACGTTCCACGCGCCGTG
TTTTTGGACCTTGAACCAACTGTAATCGATGAAGTGAGGACTGGCGCCTA
CCGTCAGTTGTTTCACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCTG
CTAACAACTTTGCCAGAGGCCACTATACAATTGGGAAAGAGATTGTGGAT
TTGTGCCTTGATAGGATCAGGAAGTTAGCTGATAACTGTACCGGTCTACA
AGGGTTCCTCGTGTTCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTCG
GGTCTTTGCTCCTTGAGAGGCTTTCTGTTGATTACGGCAAGAAATCGAAA
CTGGGATTTACAGTTTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTGA
GCCTTACAACAGCGTTTTGTCCACTCACTCTCTGTTAGACACACTGACGT
TTCTGTGTTGCTTGACAATGAAAGCATCTACGATATTT
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