FC920219

Overview
NameFC920219
Unique NameFC920219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB2_GEOCN (Tubulin beta-2 chain OS=Geotrichum candidum PE=3 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 3.018e-33
Identity = 76/193 (39.38%), Postives = 109/193 (56.48%), Query Frame = 2
Query:   53 MRECISIHIGQAGI-QVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE +SI  GQAG+ QV  A W     EHG+  DG +  D +     D  + FF+E    K+VPRAV +DLEP  +D +R+G    ++ P+ LISG+  A NN+A+G YT G E++D  +D IR+ A+    LQGF + H++                  +Y  +    ++V PSP+VS +V EPYN+VLS H
Sbjct:    1 MREIVSIQCGQAGMNQVSTAFWSTITDEHGLDADGHLRPDAS-SLESDRLDVFFNEASNKKYVPRAVAVDLEPATLDAIRSGPLGHIYRPDNLISGESGAGNNWAKGFYTEGAELMDSVMDIIRREAEQSESLQGFQLAHSLGGGTGSGLGTLLLTKIREEYPDRMLSTYSVLPSPKVSDTVTEPYNAVLSFH 192          

HSP 2 Score: 23.0978 bits (48), Expect = 3.018e-33
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  634 VRHTDVSVLLDNESIYDI 687
            + + D +  LDNE++YDI
Sbjct:  195 IDNADATYCLDNEALYDI 212          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB1_COLGR (Tubulin beta-1 chain OS=Colletotrichum graminicola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.932e-33
Identity = 74/193 (38.34%), Postives = 106/193 (54.92%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQML-SDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE I +  GQ G QVG A W+    EHG+  DG    SD+      +  + +F+E    K+VPRAV +DLEP  +D +R+G     F P+ ++ G+  A NN+A+GHYT G E+VD  LD +R+ A+ C  LQGF + H++                  ++  +    F+V PS +VS  VVEPYN+ LS H
Sbjct:    1 MREIIHLQTGQCGNQVGTAFWQTIHGEHGLDQDGVFRGSDEQQS---ERLSVYFTEAAKQKYVPRAVLVDLEPATMDAIRSGPLGDFFRPDNMVYGQSGAGNNWAKGHYTEGAELVDQVLDVVRREAEACDSLQGFQITHSLGGGTGSGMGTLLIAKVREEFPDRMMATFSVLPSAKVSEVVVEPYNATLSIH 190          

HSP 2 Score: 24.2534 bits (51), Expect = 3.932e-33
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            +H L V ++D +  +DNE++YDI
Sbjct:  189 IHQL-VENSDETFCIDNEALYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB1_CHOCR (Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.449e-33
Identity = 75/194 (38.66%), Postives = 107/194 (55.15%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFN---TFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            R  +S+ +GQ G QVG   WE    EHGI  DG+ + D+     D   +    +++E+ +G +VPRA  LDLEP V+  ++     QLFHP+    G+  A NN+A+GHYT G E+V+  LD IR+ A+ C  LQGF V H++                  +Y  +    ++V PSP+VS +VVEPYN  LS H
Sbjct:    3 RSIVSLQVGQCGNQVGLKFWEGISAEHGIDVDGKYIGDRP----DQELHRIGVYYNESSSGSYVPRAAMLDLEPGVLMAIKNSKRGQLFHPDNFAYGQSGAGNNWAKGHYTEGAELVETALDIIRREAETCDVLQGFQVTHSLGGGTGSGMGTLLVSKIREEYPDRMMCTYSVLPSPKVSDTVVEPYNCTLSIH 192          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_SCHPO (Tubulin beta chain OS=Schizosaccharomyces pombe GN=nda3 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.811e-33
Identity = 74/192 (38.54%), Postives = 105/192 (54.69%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + I  GQ G QVG A W     EHG+   G  +   T     +  N +F+E   GK+VPRAV +DLEP  +D V++G +  LF P+ +I G+  A N +A+GHYT G E+ D  LD +R+ A+ C  LQGF + H++                  +Y  +    F+V P+P+ S +VVEPYN+ LS H
Sbjct:    1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAG--IYHGTSEAQHERLNVYFNEAAGGKYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVLDVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAPAPKSSDTVVEPYNATLSMH 190          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB6_CHICK (Tubulin beta-6 chain OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.669e-33
Identity = 70/192 (36.46%), Postives = 107/192 (55.73%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + + IGQ G Q+G   WE+   EHGI   G    + ++    +  N +F+E  + K+VPR++ +DLEP  +D VR+     LF P+  I G   A NN+A+GHYT G E+++  +D +R   ++C  LQGF + H++                  +Y  +    F+V PSP+VS +VVEPYN++LS H
Sbjct:    1 MREIVHLQIGQCGNQIGAKFWEVISDEHGIDIAGNYCGNASLQL--ERINVYFNEAYSHKYVPRSILVDLEPGTMDSVRSSKIGPLFRPDNFIHGNSGAGNNWAKGHYTEGAELIENVMDVVRNECESCDCLQGFQLIHSLGGGTGSGMGTLLINKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNAILSIH 190          

HSP 2 Score: 25.409 bits (54), Expect = 6.669e-33
Identity = 10/23 (43.48%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            +H L + +TD +  +DNE++YDI
Sbjct:  189 IHQL-IENTDETFCIDNEALYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB8_PAPHA (Tubulin beta-8 chain OS=Papio hamadryas GN=TUBB8 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.918e-32
Identity = 71/192 (36.98%), Postives = 108/192 (56.25%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE +    GQ G Q+G   WE+   EH I   G    D  +    +  + +++E   G++VPRAV +DLEP  +D VR+G + Q+F P+  I G+  A NN+A+GHYT G E+++  +D +RK A++C  LQGF + H++                  +Y  +    F++ PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVLTQAGQCGNQIGAKFWEVISDEHAIDSAGTYHGDSRLQL--ERIDVYYNEACGGRYVPRAVLVDLEPGTLDSVRSGPFGQIFRPDSFIFGQCGAGNNWAKGHYTEGAELMESVMDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRIINTFSILPSPKVSDTVVEPYNATLSVH 190          

HSP 2 Score: 23.8682 bits (50), Expect = 1.918e-32
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L + + D +  +DNE++YDI
Sbjct:  189 VHQL-IENADETFCIDNEALYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB2_OOMCK (Tubulin beta-2 chain (Fragment) OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.256e-32
Identity = 66/166 (39.76%), Postives = 97/166 (58.43%), Query Frame = 2
Query:  131 EHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            EHG+ P G    D  +    +  N +++E   G++VPRA+ +DLEP  +D VR G + QLF P+  + G+  A NN+A+GHYT G E++D  LD +RK A++C  LQGF + H++                  +Y  +  L F+V PSP+VS +VVEPYN+ LS H
Sbjct:    2 EHGVDPTGTYHGDSDLQL--ERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRVMLTFSVCPSPKVSDTVVEPYNATLSVH 165          

HSP 2 Score: 25.409 bits (54), Expect = 3.256e-32
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V + D  ++LDNE++YDI
Sbjct:  164 VHQL-VENADEVMVLDNEALYDI 185          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB2_ANEPH (Tubulin beta-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.524e-32
Identity = 62/143 (43.36%), Postives = 89/143 (62.24%), Query Frame = 2
Query:  200 NTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            N +++E   G++VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V H++                  +Y  +    F+V+PSP+VS +VVEPYN+ LS H
Sbjct:   16 NVYYNEASCGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMXTFSVFPSPKVSDTVVEPYNATLSVH 158          

HSP 2 Score: 25.7942 bits (55), Expect = 5.524e-32
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V + D  ++LDNE++YDI
Sbjct:  157 VHQL-VENADECMVLDNEALYDI 178          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB1_HUMAN (Tubulin beta-1 chain OS=Homo sapiens GN=TUBB1 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 7.184e-32
Identity = 72/193 (37.31%), Postives = 107/193 (55.44%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGD-DAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + I IGQ G Q+G   WE+   EHGI   G   SD+       +  + +++E    K+VPRAV +DLEP  +D +R+     LF P+  + G   A NN+A+GHYT G E+++  L+ +R  +++C  LQGF + H++                  +Y  +    F+V PSP+VS +VVEPYN+VLS H
Sbjct:    1 MREIVHIQIGQCGNQIGAKFWEMIGEEHGIDLAG---SDRGASALQLERISVYYNEAYGRKYVPRAVLVDLEPGTMDSIRSSKLGALFQPDSFVHGNSGAGNNWAKGHYTEGAELIENVLEVVRHESESCDCLQGFQIVHSLGGGTGSGMGTLLMNKIREEYPDRIMNSFSVMPSPKVSDTVVEPYNAVLSIH 190          

HSP 2 Score: 23.483 bits (49), Expect = 7.184e-32
Identity = 9/23 (39.13%), Postives = 15/23 (65.22%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            +H L + + D    +DNE++YDI
Sbjct:  189 IHQL-IENADACFCIDNEALYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_AJECA (Tubulin beta chain OS=Ajellomyces capsulata GN=TUB2 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 7.185e-32
Identity = 72/193 (37.31%), Postives = 107/193 (55.44%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGF-TVYPSPQVSTSVVEPYNSVLSTH 628
            MRE + +  GQ G Q+G A W+    EHG+  DG    + ++    +  N +F+E    K+VPRAV +DLEP  +D VR G + QLF P+  +  +  A N +A+GHYT G E+VD  +D +R+ A+ C  LQGF + H++                  ++  +    F +V PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVHLQTGQCGNQIGAAFWQTISGEHGV--DGAGYYNGSLDIQLERMNVYFNEAAEKKYVPRAVLVDLEPGTMDSVRAGPFGQLFRPDNFVFVQSGAGNTWAKGHYTEGSELVDQVIDVVRREAERCDCLQGFQIIHSLGGGTGAGMGTLLISKIREEFPDRMMATFSSVVPSPKVSDTVVEPYNATLSNH 191          

HSP 2 Score: 23.0978 bits (48), Expect = 7.185e-32
Identity = 8/18 (44.44%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  634 VRHTDVSVLLDNESIYDI 687
            V ++D +  +DNE++YDI
Sbjct:  194 VENSDETFCIDNEALYDI 211          
The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
TBB2_GEOCN3.018e-3339.38Tubulin beta-2 chain OS=Geotrichum candidum PE=3 S... [more]
TBB1_COLGR3.932e-3338.34Tubulin beta-1 chain OS=Colletotrichum graminicola... [more]
TBB1_CHOCR4.449e-3338.66Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB P... [more]
TBB_SCHPO5.811e-3338.54Tubulin beta chain OS=Schizosaccharomyces pombe GN... [more]
TBB6_CHICK6.669e-3336.46Tubulin beta-6 chain OS=Gallus gallus PE=1 SV=1[more]
TBB8_PAPHA1.918e-3236.98Tubulin beta-8 chain OS=Papio hamadryas GN=TUBB8 P... [more]
TBB2_OOMCK3.256e-3239.76Tubulin beta-2 chain (Fragment) OS=Oomycete-like s... [more]
TBB2_ANEPH5.524e-3243.36Tubulin beta-2 chain (Fragment) OS=Anemia phylliti... [more]
TBB1_HUMAN7.184e-3237.31Tubulin beta-1 chain OS=Homo sapiens GN=TUBB1 PE=1... [more]
TBB_AJECA7.185e-3237.31Tubulin beta chain OS=Ajellomyces capsulata GN=TUB... [more]

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Properties
Property NameValue
Genbank descriptionC32005E05EF RVDevelop1 Citrus clementina cDNA clone C32005E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bp
GACTCTTAATCTCGCAATTCCCGACTCAAATCTCTAACAAAATCACACAA
GAATGAGAGAATGCATCTCAATTCACATCGGCCAGGCCGGTATCCAGGTT
GGTAATGCCTGCTGGGAGCTCTATTGCCTCGAACATGGCATTCAGCCTGA
TGGGCAAATGTTAAGTGACAAAACAGTTGGAGGCGGAGATGATGCTTTCA
ACACATTCTTCAGTGAGACCGGCGCCGGAAAGCACGTTCCACGCGCCGTG
TTTTTGGACCTTGAACCAACTGTAATCGATGAAGTGAGGACTGGCGCCTA
CCGTCAGTTGTTTCACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCTG
CTAACAACTTTGCCAGAGGCCACTATACAATTGGGAAAGAGATTGTGGAT
TTGTGCCTTGATAGGATCAGGAAGTTAGCTGATAACTGTACCGGTCTACA
AGGGTTCCTCGTGTTCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTCG
GGTCTTTGCTCCTTGAGAGGCTTTCTGTTGATTACGGCAAGAAATCGAAA
CTGGGATTTACAGTTTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTGA
GCCTTACAACAGCGTTTTGTCCACTCACTCTCTGTTAGACACACTGACGT
TTCTGTGTTGCTTGACAATGAAAGCATCTACGATATTT
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