FC920219
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB8B_HUMAN (Tubulin beta-8 chain B OS=Homo sapiens PE=1 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 5.941e-31 Identity = 71/192 (36.98%), Postives = 103/192 (53.65%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628 MRE + GQ G Q+G WE+ EH I G D + + N E G++VPRAV +DLEP +D V +G + Q+F P+ ISG+ A NN+A+G YT G E+ + +D +RK A++C LQGF + H++ +Y + F++ PSP+VS +VVEPYN+ LS H Sbjct: 1 MREIVLTQTGQCGNQIGAKFWEVISDEHAIDSAGTYHGDSHLQL--ERINVHHHEASGGRYVPRAVLVDLEPGTMDSVHSGPFGQVFRPDNFISGQCGAGNNWAKGRYTEGAELTESVMDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIINTFSILPSPKVSDTVVEPYNATLSVH 190 HSP 2 Score: 23.8682 bits (50), Expect = 5.941e-31 Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1 Query: 619 VHSLSVRHTDVSVLLDNESIYDI 687 VH L + + D + +DNE++YDI Sbjct: 189 VHQL-IENADETFCIDNEALYDI 210
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB4Q_HUMAN (Putative tubulin beta-4q chain OS=Homo sapiens GN=TUBB4Q PE=5 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.709e-30 Identity = 70/192 (36.46%), Postives = 104/192 (54.17%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628 MRE + GQ G Q+G WE+ EH I G D + + N E G++VPRAV +DLEP +D VR+G + ++F P+ IS + A NN+A+G YT G E+++ +D +RK A++C LQGF + H++ +Y + F++ PSP+VS +VVEPYN+ LS H Sbjct: 1 MREIVLTQTGQCGNQIGAKFWEVISDEHAIDSAGTYHGDSHLQL--ERINVHHHEASGGRYVPRAVLVDLEPGTMDSVRSGPFAEVFRPDNFISRQCGAGNNWAKGRYTEGAELMESVMDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRIINTFSILPSPKVSDTVVEPYNATLSVH 190 HSP 2 Score: 23.8682 bits (50), Expect = 1.709e-30 Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1 Query: 619 VHSLSVRHTDVSVLLDNESIYDI 687 VH L + + D + +DNE++YDI Sbjct: 189 VHQL-IENADETFCIDNEALYDI 210
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 8.949e-29 Identity = 68/192 (35.42%), Postives = 101/192 (52.60%), Query Frame = 2 Query: 56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQML-SDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628 RE ++I GQAG QVG A W + EHG+ G +D + T +G K+VPR+V +DLE V + +R+G QLF P+ + A NN+A+G+YT G E++D LD +R+ + LQGF + H++ +Y + F++ P+P VS +VVEPYNS+LS H Sbjct: 3 REIVNIQAGQAGNQVGEAFWRMLLAEHGLDDAGMYKGNDPQQIARAGVYFTQVDSSGPTKYVPRSVQVDLESGVCNRLRSGPLGQLFRPDTYFTSDSGAGNNWAKGYYTEGAELIDGILDIVRRQCEATEALQGFQMIHSLGGGTGAGLGSLLLSKLREEYPDRMLSTFSILPAPNVSETVVEPYNSLLSIH 194 HSP 2 Score: 25.409 bits (54), Expect = 8.949e-29 Identity = 10/23 (43.48%), Postives = 18/23 (78.26%), Query Frame = 1 Query: 619 VHSLSVRHTDVSVLLDNESIYDI 687 +H L V + D+++ +DNE++YDI Sbjct: 193 IHQL-VDNCDLTICIDNEALYDI 214
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB1_AVESA (Tubulin beta-1 chain (Fragment) OS=Avena sativa GN=TUBB1 PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 5.686e-28 Identity = 58/128 (45.31%), Postives = 79/128 (61.72%), Query Frame = 2 Query: 245 AVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628 AV +DLEP +D VRTG Y Q+F P+ + G+ A NN+A+GHYT G E++D LD +RK A+NC LQGF V H++ +Y + L F+V+PSP+VS +VVEPYN+ LS H Sbjct: 1 AVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 128 HSP 2 Score: 25.7942 bits (55), Expect = 5.686e-28 Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 1 Query: 619 VHSLSVRHTDVSVLLDNESIYDI 687 VH L V + D ++LDNE++YDI Sbjct: 127 VHQL-VENADECMVLDNEALYDI 148
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.793e-27 Identity = 71/192 (36.98%), Postives = 107/192 (55.73%), Query Frame = 2 Query: 56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS-VVEPYNSVLS 622 RE I++ +GQ G QVG+ W C EHGI DG++ T+GG D + FF + +++PRA+ LDLEP VI+ ++T R LF+PE + KE A NN+A G YT G+ + + LD I + A+ C L+GF + H++ Y KK ++V+P+ S+ VV+PYNS+L+ Sbjct: 3 REIINLQVGQCGNQVGSEFWRKLCQEHGIAKDGRLEDFATLGG--DRKDVFFYQADDEQYIPRAILLDLEPRVINGIQTSDLRNLFNPENIFISKEGGGAGNNWASG-YTQGEAVQETLLDMIDREAEYCDSLEGFNMCHSIAGGTGSGMGSYMLELISDRYSKKLIQTYSVFPNQSESSDVVVQPYNSLLT 191
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_EMENI (Tubulin gamma chain OS=Emericella nidulans GN=mipA PE=2 SV=2) HSP 1 Score: 117.472 bits (293), Expect = 6.880e-26 Identity = 64/191 (33.51%), Postives = 102/191 (53.40%), Query Frame = 2 Query: 56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLS 622 RE I+I GQ G VG+ W+ CLEHGI DG + T GG D + FF ++ +++PRA+ LDLEP V++ +++G Y+ +++PE G++ A NN+ G Y G+ + + D I + AD L+GF+ H++ + KK ++V+P Q + VV PYNS+L+ Sbjct: 3 REIITIQAGQCGNNVGSQFWQQLCLEHGISQDGNLEEFATEGG--DRKDVFFYQSDDTRYIPRAILLDLEPRVLNGIQSGPYKNIYNPENFFIGQQGIGAGNNWGAG-YAAGEVVQEEVFDMIDREADGSDSLEGFMFLHSIAGGTGSGLGSFLLERMNDRFPKKLIQTYSVFPDTQAADVVVNPYNSLLA 190
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_SCHPO (Tubulin gamma chain OS=Schizosaccharomyces pombe GN=tug1 PE=2 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 4.459e-25 Identity = 67/192 (34.90%), Postives = 106/192 (55.21%), Query Frame = 2 Query: 56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLS 622 RE I++ GQ G Q+G+ W+ CLEHGI PDG + S T G D + FF ++ +++PRA+ +DLEP V++ + + Y L++PE ++ K A NN+A G Y+ + I + +D I + AD L+GF + H++ Y KK ++V+P+ Q VS VV+PYNS+L+ Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLA 191
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_NEUCR (Tubulin gamma chain OS=Neurospora crassa GN=tub-4 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 9.935e-25 Identity = 63/192 (32.81%), Postives = 104/192 (54.17%), Query Frame = 2 Query: 56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYP-SPQVSTSVVEPYNSVLS 622 RE I+I GQ G +G+ W+ CLEHGI DG + T GG D + FF ++ +++PR++ +DLEP VI+ ++TG YR +++PE GK A NN+ G+ T G+++ + ++ I + AD L+GF++ H++ + KK ++V+P + VV PYNS+L+ Sbjct: 3 REIITIQAGQCGNSIGSQFWQQLCLEHGISQDGTIEDFATEGG--DRKDVFFYQSDDTRYIPRSILIDLEPRVINTIQTGPYRNIYNPENFYVGKSGLGAGNNWGDGYQT-GEQVHEEIMEMIEREADGSDSLEGFMMLHSIAGGTGSGLGSFLLERLNDRFPKKIIQTYSVFPDTTSAGDVVVHPYNSLLA 191
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 9.935e-25 Identity = 67/192 (34.90%), Postives = 106/192 (55.21%), Query Frame = 2 Query: 56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLS 622 RE I+I +GQ G Q+G W+ CLEHGI DG +L D GGD + FF + ++PRA+ +DLEP VI+ ++ YR L++ E + + A NN+A G++ G+++VD +D I + AD L+GF++ H++ Y KK ++V+P+ + S VV+PYNS+L+ Sbjct: 3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDG-LLEDFATQGGDRK-DVFFYQADDQHYIPRALLVDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGYHQ-GEQVVDDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLT 191
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 3.775e-24 Identity = 68/191 (35.60%), Postives = 103/191 (53.93%), Query Frame = 2 Query: 56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLS 622 RE I+ +GQ G Q+G W+ C+EHGI P+G +L D V G +D + FF + +VPRAV +DLEP VI+ ++ AY L++PE + K A NN+ RG YT +++ D L+ I + AD L+GF++ H++ Y KK ++V+P + VV+PYN +LS Sbjct: 3 REIITCQVGQCGNQIGMEFWKQLCMEHGINPEG-ILEDFAVNG-EDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSAYSSLYNPENIYIAKHGGGAGNNWGRG-YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLS 188 The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 413
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bpback to top |