FC920219

Overview
NameFC920219
Unique NameFC920219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB8B_HUMAN (Tubulin beta-8 chain B OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.941e-31
Identity = 71/192 (36.98%), Postives = 103/192 (53.65%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE +    GQ G Q+G   WE+   EH I   G    D  +    +  N    E   G++VPRAV +DLEP  +D V +G + Q+F P+  ISG+  A NN+A+G YT G E+ +  +D +RK A++C  LQGF + H++                  +Y  +    F++ PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVLTQTGQCGNQIGAKFWEVISDEHAIDSAGTYHGDSHLQL--ERINVHHHEASGGRYVPRAVLVDLEPGTMDSVHSGPFGQVFRPDNFISGQCGAGNNWAKGRYTEGAELTESVMDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIINTFSILPSPKVSDTVVEPYNATLSVH 190          

HSP 2 Score: 23.8682 bits (50), Expect = 5.941e-31
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L + + D +  +DNE++YDI
Sbjct:  189 VHQL-IENADETFCIDNEALYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB4Q_HUMAN (Putative tubulin beta-4q chain OS=Homo sapiens GN=TUBB4Q PE=5 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.709e-30
Identity = 70/192 (36.46%), Postives = 104/192 (54.17%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            MRE +    GQ G Q+G   WE+   EH I   G    D  +    +  N    E   G++VPRAV +DLEP  +D VR+G + ++F P+  IS +  A NN+A+G YT G E+++  +D +RK A++C  LQGF + H++                  +Y  +    F++ PSP+VS +VVEPYN+ LS H
Sbjct:    1 MREIVLTQTGQCGNQIGAKFWEVISDEHAIDSAGTYHGDSHLQL--ERINVHHHEASGGRYVPRAVLVDLEPGTMDSVRSGPFAEVFRPDNFISRQCGAGNNWAKGRYTEGAELMESVMDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRIINTFSILPSPKVSDTVVEPYNATLSVH 190          

HSP 2 Score: 23.8682 bits (50), Expect = 1.709e-30
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L + + D +  +DNE++YDI
Sbjct:  189 VHQL-IENADETFCIDNEALYDI 210          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB2_SUIBO (Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.949e-29
Identity = 68/192 (35.42%), Postives = 101/192 (52.60%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQML-SDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            RE ++I  GQAG QVG A W +   EHG+   G    +D         + T    +G  K+VPR+V +DLE  V + +R+G   QLF P+   +    A NN+A+G+YT G E++D  LD +R+  +    LQGF + H++                  +Y  +    F++ P+P VS +VVEPYNS+LS H
Sbjct:    3 REIVNIQAGQAGNQVGEAFWRMLLAEHGLDDAGMYKGNDPQQIARAGVYFTQVDSSGPTKYVPRSVQVDLESGVCNRLRSGPLGQLFRPDTYFTSDSGAGNNWAKGYYTEGAELIDGILDIVRRQCEATEALQGFQMIHSLGGGTGAGLGSLLLSKLREEYPDRMLSTFSILPAPNVSETVVEPYNSLLSIH 194          

HSP 2 Score: 25.409 bits (54), Expect = 8.949e-29
Identity = 10/23 (43.48%), Postives = 18/23 (78.26%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            +H L V + D+++ +DNE++YDI
Sbjct:  193 IHQL-VDNCDLTICIDNEALYDI 214          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB1_AVESA (Tubulin beta-1 chain (Fragment) OS=Avena sativa GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.686e-28
Identity = 58/128 (45.31%), Postives = 79/128 (61.72%), Query Frame = 2
Query:  245 AVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            AV +DLEP  +D VRTG Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V H++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H
Sbjct:    1 AVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVH 128          

HSP 2 Score: 25.7942 bits (55), Expect = 5.686e-28
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V + D  ++LDNE++YDI
Sbjct:  127 VHQL-VENADECMVLDNEALYDI 148          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.793e-27
Identity = 71/192 (36.98%), Postives = 107/192 (55.73%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS-VVEPYNSVLS 622
            RE I++ +GQ G QVG+  W   C EHGI  DG++    T+GG  D  + FF +    +++PRA+ LDLEP VI+ ++T   R LF+PE +   KE   A NN+A G YT G+ + +  LD I + A+ C  L+GF + H++                   Y KK    ++V+P+   S+  VV+PYNS+L+
Sbjct:    3 REIINLQVGQCGNQVGSEFWRKLCQEHGIAKDGRLEDFATLGG--DRKDVFFYQADDEQYIPRAILLDLEPRVINGIQTSDLRNLFNPENIFISKEGGGAGNNWASG-YTQGEAVQETLLDMIDREAEYCDSLEGFNMCHSIAGGTGSGMGSYMLELISDRYSKKLIQTYSVFPNQSESSDVVVQPYNSLLT 191          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_EMENI (Tubulin gamma chain OS=Emericella nidulans GN=mipA PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.880e-26
Identity = 64/191 (33.51%), Postives = 102/191 (53.40%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLS 622
            RE I+I  GQ G  VG+  W+  CLEHGI  DG +    T GG  D  + FF ++   +++PRA+ LDLEP V++ +++G Y+ +++PE    G++   A NN+  G Y  G+ + +   D I + AD    L+GF+  H++                   + KK    ++V+P  Q +  VV PYNS+L+
Sbjct:    3 REIITIQAGQCGNNVGSQFWQQLCLEHGISQDGNLEEFATEGG--DRKDVFFYQSDDTRYIPRAILLDLEPRVLNGIQSGPYKNIYNPENFFIGQQGIGAGNNWGAG-YAAGEVVQEEVFDMIDREADGSDSLEGFMFLHSIAGGTGSGLGSFLLERMNDRFPKKLIQTYSVFPDTQAADVVVNPYNSLLA 190          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_SCHPO (Tubulin gamma chain OS=Schizosaccharomyces pombe GN=tug1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.459e-25
Identity = 67/192 (34.90%), Postives = 106/192 (55.21%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLS 622
            RE I++  GQ G Q+G+  W+  CLEHGI PDG + S  T   G D  + FF ++   +++PRA+ +DLEP V++ + +  Y  L++PE ++  K    A NN+A G Y+  + I +  +D I + AD    L+GF + H++                   Y KK    ++V+P+ Q VS  VV+PYNS+L+
Sbjct:    3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKKIIQTYSVFPNSQSVSDVVVQPYNSLLA 191          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_NEUCR (Tubulin gamma chain OS=Neurospora crassa GN=tub-4 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.935e-25
Identity = 63/192 (32.81%), Postives = 104/192 (54.17%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYP-SPQVSTSVVEPYNSVLS 622
            RE I+I  GQ G  +G+  W+  CLEHGI  DG +    T GG  D  + FF ++   +++PR++ +DLEP VI+ ++TG YR +++PE    GK    A NN+  G+ T G+++ +  ++ I + AD    L+GF++ H++                   + KK    ++V+P +      VV PYNS+L+
Sbjct:    3 REIITIQAGQCGNSIGSQFWQQLCLEHGISQDGTIEDFATEGG--DRKDVFFYQSDDTRYIPRSILIDLEPRVINTIQTGPYRNIYNPENFYVGKSGLGAGNNWGDGYQT-GEQVHEEIMEMIEREADGSDSLEGFMMLHSIAGGTGSGLGSFLLERLNDRFPKKIIQTYSVFPDTTSAGDVVVHPYNSLLA 191          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.935e-25
Identity = 67/192 (34.90%), Postives = 106/192 (55.21%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSP-QVSTSVVEPYNSVLS 622
            RE I+I +GQ G Q+G   W+  CLEHGI  DG +L D    GGD   + FF +     ++PRA+ +DLEP VI+ ++   YR L++ E +   +    A NN+A G++  G+++VD  +D I + AD    L+GF++ H++                   Y KK    ++V+P+  + S  VV+PYNS+L+
Sbjct:    3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDG-LLEDFATQGGDRK-DVFFYQADDQHYIPRALLVDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGYHQ-GEQVVDDIMDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLT 191          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.775e-24
Identity = 68/191 (35.60%), Postives = 103/191 (53.93%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLS 622
            RE I+  +GQ G Q+G   W+  C+EHGI P+G +L D  V G +D  + FF +     +VPRAV +DLEP VI+ ++  AY  L++PE +   K    A NN+ RG YT  +++ D  L+ I + AD    L+GF++ H++                   Y KK    ++V+P    +  VV+PYN +LS
Sbjct:    3 REIITCQVGQCGNQIGMEFWKQLCMEHGINPEG-ILEDFAVNG-EDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSAYSSLYNPENIYIAKHGGGAGNNWGRG-YTDAEKVQDEILEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPIE--NDVVVQPYNCLLS 188          
The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
TBB8B_HUMAN5.941e-3136.98Tubulin beta-8 chain B OS=Homo sapiens PE=1 SV=1[more]
TBB4Q_HUMAN1.709e-3036.46Putative tubulin beta-4q chain OS=Homo sapiens GN=... [more]
TBB2_SUIBO8.949e-2935.42Tubulin beta-2 chain OS=Suillus bovinus GN=TUBB2 P... [more]
TBB1_AVESA5.686e-2845.31Tubulin beta-1 chain (Fragment) OS=Avena sativa GN... [more]
TBG_CHLRE2.793e-2736.98Tubulin gamma chain OS=Chlamydomonas reinhardtii G... [more]
TBG_EMENI6.880e-2633.51Tubulin gamma chain OS=Emericella nidulans GN=mipA... [more]
TBG_SCHPO4.459e-2534.90Tubulin gamma chain OS=Schizosaccharomyces pombe G... [more]
TBG_NEUCR9.935e-2532.81Tubulin gamma chain OS=Neurospora crassa GN=tub-4 ... [more]
TBG2_ORYSJ9.935e-2534.90Tubulin gamma-2 chain OS=Oryza sativa subsp. japon... [more]
TBG2_EUPOC3.775e-2435.60Tubulin gamma-2 chain OS=Euplotes octocarinatus PE... [more]

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Properties
Property NameValue
Genbank descriptionC32005E05EF RVDevelop1 Citrus clementina cDNA clone C32005E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bp
GACTCTTAATCTCGCAATTCCCGACTCAAATCTCTAACAAAATCACACAA
GAATGAGAGAATGCATCTCAATTCACATCGGCCAGGCCGGTATCCAGGTT
GGTAATGCCTGCTGGGAGCTCTATTGCCTCGAACATGGCATTCAGCCTGA
TGGGCAAATGTTAAGTGACAAAACAGTTGGAGGCGGAGATGATGCTTTCA
ACACATTCTTCAGTGAGACCGGCGCCGGAAAGCACGTTCCACGCGCCGTG
TTTTTGGACCTTGAACCAACTGTAATCGATGAAGTGAGGACTGGCGCCTA
CCGTCAGTTGTTTCACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCTG
CTAACAACTTTGCCAGAGGCCACTATACAATTGGGAAAGAGATTGTGGAT
TTGTGCCTTGATAGGATCAGGAAGTTAGCTGATAACTGTACCGGTCTACA
AGGGTTCCTCGTGTTCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTCG
GGTCTTTGCTCCTTGAGAGGCTTTCTGTTGATTACGGCAAGAAATCGAAA
CTGGGATTTACAGTTTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTGA
GCCTTACAACAGCGTTTTGTCCACTCACTCTCTGTTAGACACACTGACGT
TTCTGTGTTGCTTGACAATGAAAGCATCTACGATATTT
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