FC920219

Overview
NameFC920219
Unique NameFC920219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG1_DROME (Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.447e-23
Identity = 65/191 (34.03%), Postives = 102/191 (53.40%), Query Frame = 2
Query:   59 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPS-PQVSTSVVEPYNSVLS 622
            E I++ +GQ G Q+G   W+  CLEHGI P G +  +     G D  + FF +     ++PRAV LDLEP VI+ +    Y +L++PE +   K    A NN+A G Y+ G+++ +   D I + AD    L+GF++ H++                   Y KK    F+V+P+  ++S  VV+PYNS+L+
Sbjct:    4 EIITLQLGQCGNQIGFEFWKRLCLEHGISPSGVL--EDFANDGLDRKDVFFYQADDDHYIPRAVLLDLEPRVINTIMGSVYSKLYNPENVYLSKHGGGAGNNWASG-YSQGEKLQEEVFDIIDREADGSDSLEGFILCHSIAGGTGSGMGSFIMERLADRYPKKLIQTFSVFPNQDEISDVVVQPYNSMLT 191          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.447e-23
Identity = 62/195 (31.79%), Postives = 95/195 (48.72%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGD----DAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLST 625
            MRE +++ IG AG  +G++ W +   EHG+       +    GG      +  N FF+ T + +   R + +D E + I   R  A  QL+ PE  ++G E A NNFARG++T G  I+D  L+  R+  ++   LQGF + H++                   Y       +   PSP +S  VVEPYN++LST
Sbjct:    1 MREIVTLQIGGAGNAIGDSFWHVISHEHGVD-----YASGRFGGTSPLQLERINVFFNATASKRFYARTILIDTEASTIQ--RLNASSQLYRPENFVAGSESAGNNFARGYHTDGAAILDQVLENTRREVESVDSLQGFQLLHSIGGGTGSGLTSLIMEALVEQYPDNLLCNYVTIPSPNMSQVVVEPYNALLST 188          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 4.174e-23
Identity = 62/191 (32.46%), Postives = 103/191 (53.93%), Query Frame = 2
Query:   59 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPS-PQVSTSVVEPYNSVLS 622
            E I++ +GQ G Q+G   W+  CLEHGI PDG +    T   G D  + FF +     ++PRAV +DLEP VI+ + T  Y +L++ E +   K    A NN+A G ++ G+++ +   D + + AD    L+GF++ H++                   + KK    ++V+P+  ++S  VV+PYNS+L+
Sbjct:    4 EIITLQLGQCGNQIGFEFWKRLCLEHGISPDGVLEDFAT--DGQDRKDVFFYQADDNHYIPRAVLIDLEPRVINNIMTSPYSKLYNQENVFLSKHGGGAGNNWASG-FSQGEKVQEEVFDILDREADGSDSLEGFVLCHSIAGGTGSGMGSYVLERLSERFPKKLIQTYSVFPNQDEISDVVVQPYNSILT 191          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_SCHJP (Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 64/192 (33.33%), Postives = 104/192 (54.17%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQ-VSTSVVEPYNSVLS 622
            RE I++  GQ G QVG+  W+  CLEHGI PDG +    T   G D  + FF ++   +++PRA+ LDLEP V++ + +  Y  L++PE +    +   A NN+A G Y   ++I +  +D I + A+    L+GF + H++                   + KK    ++V+P+ + VS  VV+PYNS+L+
Sbjct:    3 REIITLQAGQCGNQVGSQFWQQLCLEHGICPDGTLEDFAT--EGLDRKDVFFYQSDDTRYIPRAILLDLEPRVVNNILSDTYGSLYNPENIFVATDGGGAGNNWAHG-YAHAEKIFEDIVDMIDREAEGSDSLEGFSLLHSIAGGTGSGLGSYLLERLNDRFPKKIVQTYSVFPNNRSVSDVVVQPYNSLLT 191          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG2_EUPCR (Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.299e-23
Identity = 62/191 (32.46%), Postives = 101/191 (52.88%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGK--EDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLS 622
            RE I+  +GQ G Q+G   W+  C+EHGI P+G  + ++    G+D  + FF +     +VPRAV +DLEP VI +++   Y  L++PE     K  + A NN+A+G Y  G +  +  ++ I + AD    L+GF++ H++                   Y KK    ++V+P+   +  VV+PYN +LS
Sbjct:    3 REIITCQVGQCGNQIGMEFWKQLCMEHGISPEG--ILEEYALDGEDRKDVFFYQADDEHYVPRAVLIDLEPGVIKQIQNSPYSNLYNPENFFVSKTMDGAGNNWAKG-YCEGAKYEEEIIEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLEKLNDHYPKKLVQTYSVFPND--NDIVVQPYNCILS 188          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG2_MOUSE (Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.214e-22
Identity = 63/192 (32.81%), Postives = 104/192 (54.17%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPS-PQVSTSVVEPYNSVLS 622
            RE I++ +GQ G Q+G   W+  C EHGI P+G  + ++    G D  + FF +     ++PRAV LDLEP VI  +   +Y +L++PE +   +    A NN+ RG ++ G++I +   D I + AD    L+GF++ H++                   Y KK    ++V+P+  ++S  VV+PYNS+L+
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEG--IVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWGRG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLT 191          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG1_RAT (Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.071e-22
Identity = 63/192 (32.81%), Postives = 104/192 (54.17%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPS-PQVSTSVVEPYNSVLS 622
            RE I++ +GQ G Q+G   W+  C EHGI P+G  + ++    G D  + FF +     ++PRAV LDLEP VI  +   +Y +L++PE +   +    A NN+A G ++ G++I +   D I + AD    L+GF++ H++                   Y KK    ++V+P+  ++S  VV+PYNS+L+
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEG--IVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLT 191          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG1_MOUSE (Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.071e-22
Identity = 63/192 (32.81%), Postives = 104/192 (54.17%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPS-PQVSTSVVEPYNSVLS 622
            RE I++ +GQ G Q+G   W+  C EHGI P+G  + ++    G D  + FF +     ++PRAV LDLEP VI  +   +Y +L++PE +   +    A NN+A G ++ G++I +   D I + AD    L+GF++ H++                   Y KK    ++V+P+  ++S  VV+PYNS+L+
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEG--IVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSSYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLT 191          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG1_EUPCR (Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.071e-22
Identity = 61/191 (31.94%), Postives = 101/191 (52.88%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLS 622
            RE I+  +GQ G Q+G   W+  C+EHGI P+G  + ++    G+D  + FF +     +VPRAV +DLEP VI+ ++   Y  L++PE +   K    A NN+ RG Y   +++ +  ++ I + AD    L+GF++ H++                   Y KK    ++V+P+   +  VV+PYN +LS
Sbjct:    3 REIITCQVGQCGNQIGMEFWKQLCMEHGINPEG--ILEEYAQNGEDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSPYASLYNPENIFISKHGGGAGNNWGRG-YCDAEKVQEEIIEMIDREADGSDSLEGFVLTHSIAGGTGSGFGSYLLERLNDHYPKKLIQTYSVFPNE--NDVVVQPYNCLLS 188          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG2_BOVIN (Tubulin gamma-2 chain OS=Bos taurus GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.533e-22
Identity = 63/192 (32.81%), Postives = 103/192 (53.65%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPS-PQVSTSVVEPYNSVLS 622
            RE I++ +GQ G Q+G   W+  C EHGI P+G  + ++    G D  + FF +     ++PRAV LDLEP VI  +    Y +L++PE +   +    A NN+A G ++ G++I +   D I + AD    L+GF++ H++                   Y KK    ++V+P+  ++S  VV+PYNS+L+
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEG--IVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLT 191          
The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
TBG1_DROME2.447e-2334.03Tubulin gamma-1 chain OS=Drosophila melanogaster G... [more]
TBBP_DROME2.447e-2331.79Probable tubulin beta chain CG32396 OS=Drosophila ... [more]
TBG2_DROME4.174e-2332.46Tubulin gamma-2 chain OS=Drosophila melanogaster G... [more]
TBG_SCHJP9.299e-2333.33Tubulin gamma chain OS=Schizosaccharomyces japonic... [more]
TBG2_EUPCR9.299e-2332.46Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG2_MOUSE1.214e-2232.81Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=... [more]
TBG1_RAT2.071e-2232.81Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg... [more]
TBG1_MOUSE2.071e-2232.81Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=... [more]
TBG1_EUPCR2.071e-2231.94Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=... [more]
TBG2_BOVIN3.533e-2232.81Tubulin gamma-2 chain OS=Bos taurus GN=TUBG2 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC32005E05EF RVDevelop1 Citrus clementina cDNA clone C32005E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bp
GACTCTTAATCTCGCAATTCCCGACTCAAATCTCTAACAAAATCACACAA
GAATGAGAGAATGCATCTCAATTCACATCGGCCAGGCCGGTATCCAGGTT
GGTAATGCCTGCTGGGAGCTCTATTGCCTCGAACATGGCATTCAGCCTGA
TGGGCAAATGTTAAGTGACAAAACAGTTGGAGGCGGAGATGATGCTTTCA
ACACATTCTTCAGTGAGACCGGCGCCGGAAAGCACGTTCCACGCGCCGTG
TTTTTGGACCTTGAACCAACTGTAATCGATGAAGTGAGGACTGGCGCCTA
CCGTCAGTTGTTTCACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCTG
CTAACAACTTTGCCAGAGGCCACTATACAATTGGGAAAGAGATTGTGGAT
TTGTGCCTTGATAGGATCAGGAAGTTAGCTGATAACTGTACCGGTCTACA
AGGGTTCCTCGTGTTCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTCG
GGTCTTTGCTCCTTGAGAGGCTTTCTGTTGATTACGGCAAGAAATCGAAA
CTGGGATTTACAGTTTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTGA
GCCTTACAACAGCGTTTTGTCCACTCACTCTCTGTTAGACACACTGACGT
TTCTGTGTTGCTTGACAATGAAAGCATCTACGATATTT
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