FC920219

Overview
NameFC920219
Unique NameFC920219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG1_HUMAN (Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.533e-22
Identity = 63/192 (32.81%), Postives = 103/192 (53.65%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPS-PQVSTSVVEPYNSVLS 622
            RE I++ +GQ G Q+G   W+  C EHGI P+G  + ++    G D  + FF +     ++PRAV LDLEP VI  +    Y +L++PE +   +    A NN+A G ++ G++I +   D I + AD    L+GF++ H++                   Y KK    ++V+P+  ++S  VV+PYNS+L+
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEG--IVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLT 191          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG1_CANFA (Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.533e-22
Identity = 63/192 (32.81%), Postives = 103/192 (53.65%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPS-PQVSTSVVEPYNSVLS 622
            RE I++ +GQ G Q+G   W+  C EHGI P+G  + ++    G D  + FF +     ++PRAV LDLEP VI  +    Y +L++PE +   +    A NN+A G ++ G++I +   D I + AD    L+GF++ H++                   Y KK    ++V+P+  ++S  VV+PYNS+L+
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEG--IVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLT 191          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG1_BOVIN (Tubulin gamma-1 chain OS=Bos taurus GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.533e-22
Identity = 63/192 (32.81%), Postives = 103/192 (53.65%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPS-PQVSTSVVEPYNSVLS 622
            RE I++ +GQ G Q+G   W+  C EHGI P+G  + ++    G D  + FF +     ++PRAV LDLEP VI  +    Y +L++PE +   +    A NN+A G ++ G++I +   D I + AD    L+GF++ H++                   Y KK    ++V+P+  ++S  VV+PYNS+L+
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEG--IVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLT 191          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG2_HUMAN (Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.615e-22
Identity = 63/192 (32.81%), Postives = 102/192 (53.12%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYP-SPQVSTSVVEPYNSVLS 622
            RE I++ +GQ G Q+G   W+  C EHGI P+G  + ++    G D  + FF +     ++PRAV LDLEP VI  +    Y +L++PE +   +    A NN+A G ++ G++I +   D I + AD    L+GF++ H++                   Y KK    ++V+P   ++S  VV+PYNS+L+
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEG--IVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPYQDEMSDVVVQPYNSLLT 191          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG1_XENLA (Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.027e-22
Identity = 63/192 (32.81%), Postives = 102/192 (53.12%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPS-PQVSTSVVEPYNSVLS 622
            RE I++ +GQ G Q+G   W+  C EHGI P+G  + ++    G D  + FF +     ++PRAV LDLEP VI  +    Y  L++PE +   +    A NN+A G ++ G++I +   D I + AD    L+GF++ H++                   Y KK    ++V+P+  ++S  VV+PYNS+L+
Sbjct:    3 REIITLQLGQCGNQIGFEFWKQLCAEHGISPEG--IVEEFATEGTDRKDVFFYQADDEHYIPRAVLLDLEPRVIHSILNSPYANLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIFDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSHVVVQPYNSLLT 191          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_PLAFO (Tubulin gamma chain OS=Plasmodium falciparum (isolate NF54) GN=G-TUB PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.343e-21
Identity = 61/193 (31.61%), Postives = 101/193 (52.33%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYP--SPQVSTSVVEPYNSVLS 622
            RE I++  GQ G Q+G   W+  C EH I  +G + ++  +   +D  + FF +      +P A+  DLEP VI+ ++T  YR L++PE +   KE   A NN+  G Y+ G ++ +  +D I +  DN   L+GF++ H++                  +Y KK    F+V+P  + + S  VV+PYNS+L+
Sbjct:    3 REIITLQCGQCGNQIGVEFWKQLCNEHNIDQEGILKNNNFLN--EDRKDIFFYQADDEHFIPGALLFDLEPRVINSIQTSEYRNLYNPENMFISKEGGGAGNNWGCG-YSQGHKVEEEIIDMIDREVDNSDNLEGFILSHSIAGGTGSGMGSYLLELLNDNYSKKMIQTFSVFPLLTNESSDVVVQPYNSILT 192          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.343e-21
Identity = 63/194 (32.47%), Postives = 104/194 (53.61%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQ-LISGKEDAANNFARGHYTIGK--EIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVY--PSPQVSTSVVEPYNSVLS 622
            RE I++++GQ G Q+G+  ++  C EHGI PDG + +++ +   DD  + FF +    ++VPR++ +DLEP V+D +RT  +R  ++PE  +I     A N++A G+YT  K  EI ++    I +  ++C  L+GF   H++                   Y K     F+V    +P V   VV PYNS+L+
Sbjct:    3 REIITLNVGQCGNQLGSEFFKKICSEHGILPDGSLSTNEFI---DDRKDVFFYQADDQRYVPRSINIDLEPRVLDSIRTSEWRNFYNPENFIIPTNNGAGNSWANGYYTTEKMSEIEEI----IDREVEHCDSLEGFFFCHSICGGTGSGLGSKIMEMISEKYPKNILTSFSVMVKENPDV---VVSPYNSILT 186          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.754e-21
Identity = 64/191 (33.51%), Postives = 99/191 (51.83%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLS 622
            RE I++ +GQ G Q+G+  W+  C EHGI   G +  ++    G D  + FF ++    +VPRA+ LDLEP VID ++T  Y  L++ E +   ++   A NN+A G Y  G+   D   D I + AD    L+GFL+ H++                   + KK    ++V+P    S+ VV+ YNSVL+
Sbjct:    3 REIITLQVGQCGNQIGSEFWKQLCKEHGINAAGYL--EEFAKPGIDRKDVFFYQSDDDHYVPRALLLDLEPRVIDSIKTSEYSGLYNQENIFVAEKGTGAGNNWANG-YKQGESFYDDIFDMIDREADGSESLEGFLLTHSISGGTGSGMGSYILERLNDRFPKKIIQTYSVFPDD--SSVVVQQYNSVLT 188          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBB_HALDI (Tubulin beta chain (Fragment) OS=Haliotis discus PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 9.181e-21
Identity = 47/115 (40.87%), Postives = 68/115 (59.13%), Query Frame = 2
Query:  284 VRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            VR+G + Q+F P+  + G+  A NN+A+GHYT G E+VD  LD +RK A++C  LQGF + H++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H
Sbjct:    2 VRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVH 116          

HSP 2 Score: 26.1794 bits (56), Expect = 9.181e-21
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L V +TD +  +DNE++YDI
Sbjct:  115 VHQL-VENTDETYCIDNEALYDI 136          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.319e-20
Identity = 60/195 (30.77%), Postives = 98/195 (50.26%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS-VVEPYNSVLSTH 628
            MRE +++ +GQ G Q+G   W+  C EHGI   G +   + +G   D  + FF +      VPRA+ +DLEP VI +  +      F  E +    E   A NN+  G Y +GK + +  +D I++ A+ C  L+ FL+ H++                  ++ KK    ++++P+   S+  VV+PYNSVL+ H
Sbjct:    1 MREVVTLQVGQCGNQMGAEFWKTLCKEHGISMCGVLQDSRDLG---DRKDVFFYQADDNVFVPRAILVDLEPRVISQAPS-----FFSQESIFLSNEGGGAGNNWGHG-YCVGKAMGNDVIDMIQREAEGCDALETFLLLHSIAGGTGSGFGSLLLERIKEEFPKKIVQTYSIFPNNDESSDVVVQPYNSVLTLH 186          
The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
TBG1_HUMAN3.533e-2232.81Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=... [more]
TBG1_CANFA3.533e-2232.81Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1... [more]
TBG1_BOVIN3.533e-2232.81Tubulin gamma-1 chain OS=Bos taurus GN=TUBG1 PE=2 ... [more]
TBG2_HUMAN4.615e-2232.81Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=... [more]
TBG1_XENLA6.027e-2232.81Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 P... [more]
TBG_PLAFO1.343e-2131.61Tubulin gamma chain OS=Plasmodium falciparum (isol... [more]
TBG_ENTHI1.343e-2132.47Tubulin gamma chain OS=Entamoeba histolytica PE=2 ... [more]
TBG_DICDI1.754e-2133.51Tubulin gamma chain OS=Dictyostelium discoideum GN... [more]
TBB_HALDI9.181e-2140.87Tubulin beta chain (Fragment) OS=Haliotis discus P... [more]
TBG_ENCCU4.319e-2030.77Tubulin gamma chain OS=Encephalitozoon cuniculi GN... [more]

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Properties
Property NameValue
Genbank descriptionC32005E05EF RVDevelop1 Citrus clementina cDNA clone C32005E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bp
GACTCTTAATCTCGCAATTCCCGACTCAAATCTCTAACAAAATCACACAA
GAATGAGAGAATGCATCTCAATTCACATCGGCCAGGCCGGTATCCAGGTT
GGTAATGCCTGCTGGGAGCTCTATTGCCTCGAACATGGCATTCAGCCTGA
TGGGCAAATGTTAAGTGACAAAACAGTTGGAGGCGGAGATGATGCTTTCA
ACACATTCTTCAGTGAGACCGGCGCCGGAAAGCACGTTCCACGCGCCGTG
TTTTTGGACCTTGAACCAACTGTAATCGATGAAGTGAGGACTGGCGCCTA
CCGTCAGTTGTTTCACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCTG
CTAACAACTTTGCCAGAGGCCACTATACAATTGGGAAAGAGATTGTGGAT
TTGTGCCTTGATAGGATCAGGAAGTTAGCTGATAACTGTACCGGTCTACA
AGGGTTCCTCGTGTTCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTCG
GGTCTTTGCTCCTTGAGAGGCTTTCTGTTGATTACGGCAAGAAATCGAAA
CTGGGATTTACAGTTTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTGA
GCCTTACAACAGCGTTTTGTCCACTCACTCTCTGTTAGACACACTGACGT
TTCTGTGTTGCTTGACAATGAAAGCATCTACGATATTT
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