FC920219
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_NEOCA (Tubulin alpha chain OS=Neospora caninum GN=TUBA PE=2 SV=1) HSP 1 Score: 326.25 bits (835), Expect = 2.407e-92 Identity = 158/193 (81.87%), Postives = 167/193 (86.53%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIH+GQAGIQ+GNACWEL+CLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPR VFLDLEPTV+DEVRTG YR LFHPEQLISGKEDAANNFARGHYTIGKEIVDL LDRIRKLADNCTGLQGFL+F+AV VDYGKKSKL F +PSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREVISIHVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVVDEVRTGTYRHLFHPEQLISGKEDAANNFARGHYTIGKEIVDLSLDRIRKLADNCTGLQGFLMFNAVGGGTGSGLGCLLLERLSVDYGKKSKLNFCSWPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 34.6538 bits (78), Expect = 2.407e-92 Identity = 16/22 (72.73%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+V+LDNE+IYDI Sbjct: 192 HSL-LEHTDVAVMLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_AVESA (Tubulin alpha chain OS=Avena sativa GN=TUBA PE=2 SV=1) HSP 1 Score: 325.094 bits (832), Expect = 3.141e-92 Identity = 159/193 (82.38%), Postives = 167/193 (86.53%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIHIGQAGIQVGNACWELYCLEHGIQ DG M SD TVG DAFNTFFSETGAGKHVPRA+F+DLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCL R+R+LADNCTGLQGFLVF+AV VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGIQQDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLGRVRQLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 35.4242 bits (80), Expect = 3.141e-92 Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+VLLDNE+IYDI Sbjct: 192 HSL-LEHTDVAVLLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA5_MAIZE (Tubulin alpha-5 chain OS=Zea mays GN=TUBA5 PE=2 SV=1) HSP 1 Score: 324.324 bits (830), Expect = 5.345e-92 Identity = 157/193 (81.35%), Postives = 168/193 (87.05%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIHIGQAGIQVGNACWELYCLEHGI+ DG M SD +VG DAFNTFFSETG+GKHVPRA+F+DLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLADNCTGLQGFLVF+AV VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREIISIHIGQAGIQVGNACWELYCLEHGIEHDGTMPSDSSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 35.4242 bits (80), Expect = 5.345e-92 Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV+VLLDNE+IYDI Sbjct: 192 HSL-LEHTDVAVLLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1C_BOVIN (Tubulin alpha-1C chain OS=Bos taurus GN=TUBA1C PE=1 SV=1) HSP 1 Score: 329.331 bits (843), Expect = 5.848e-91 Identity = 153/193 (79.27%), Postives = 170/193 (88.08%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLISGKEDAANN+ARGHYTIGKEI+DL LDR+RKLAD CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 5.848e-91 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_TORMA (Tubulin alpha chain OS=Torpedo marmorata PE=2 SV=1) HSP 1 Score: 328.561 bits (841), Expect = 9.952e-91 Identity = 153/193 (79.27%), Postives = 170/193 (88.08%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 9.952e-91 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA3_DROME (Tubulin alpha-3 chain OS=Drosophila melanogaster GN=alphaTub84D PE=1 SV=1) HSP 1 Score: 328.561 bits (841), Expect = 9.952e-91 Identity = 154/193 (79.79%), Postives = 169/193 (87.56%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKTVGGGDD+FNTFFSETGAGKHVPRAVF+DLEPTV+DEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+FH+ VDYGKKSKL F VYP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 9.952e-91 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1B_RAT (Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tuba1b PE=1 SV=1) HSP 1 Score: 328.561 bits (841), Expect = 9.952e-91 Identity = 153/193 (79.27%), Postives = 170/193 (88.08%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 9.952e-91 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1B_PIG (Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=2 SV=1) HSP 1 Score: 328.561 bits (841), Expect = 9.952e-91 Identity = 153/193 (79.27%), Postives = 170/193 (88.08%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 9.952e-91 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1B_PANTR (Tubulin alpha-1B chain OS=Pan troglodytes GN=TUBA1B PE=2 SV=1) HSP 1 Score: 328.561 bits (841), Expect = 9.952e-91 Identity = 153/193 (79.27%), Postives = 170/193 (88.08%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 9.952e-91 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1B_MOUSE (Tubulin alpha-1B chain OS=Mus musculus GN=Tuba1b PE=1 SV=2) HSP 1 Score: 328.561 bits (841), Expect = 9.952e-91 Identity = 153/193 (79.27%), Postives = 170/193 (88.08%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 9.952e-91 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212 The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 413
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bpback to top |