FC920219
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA4_MAIZE (Tubulin alpha-4 chain (Fragments) OS=Zea mays GN=TUBA4 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.623e-20 Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFN 202 MRECISIHIGQAGIQVGNACWELYCLEHGIQ DGQM DKT+GGGD F+ Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPGDKTIGGGDAEFD 50
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.800e-19 Identity = 63/192 (32.81%), Postives = 99/192 (51.56%), Query Frame = 2 Query: 56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPS-PQVSTSVVEPYNSVLS 622 RE I++ +GQ G Q+G W EHGI PDG + T G D + FF + ++PRA+ +DLEP VI+ ++ ++ L++PE + + A NN+A G YT E + +D I + DN L+GF++ H++ Y KK ++V+P+ + S+ VV PYNSVL+ Sbjct: 3 REIITLQVGQCGNQIGTEFWGRLIAEHGIGPDGIVKEFATEG--TDRKDVFFYQADDQHYIPRALLIDLEPRVINSLQESEFKNLWNPENVYIDSQGGGAGNNWAVG-YTHATEKYEHIMDMIDR-EDNSDSLEGFVLTHSIAGGTGSGFGSHMLEQLTDRYPKKIIQTYSVFPNDSERSSVVVHPYNSVLA 190
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: YI016_HUMAN (Putative tubulin beta chain-like protein ENSP00000290377 OS=Homo sapiens PE=5 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.425e-17 Identity = 43/118 (36.44%), Postives = 67/118 (56.78%), Query Frame = 2 Query: 275 IDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628 +D VR+G + Q+ P+ I G+ A NN+A+G YT G E+ + +D +RK A++C LQGF + H++ +Y + F++ PSP+VS +VVEPYN+ LS H Sbjct: 1 MDSVRSGPFGQVLRPDNFIFGQCGAGNNWAKGRYTEGAELTESVMDVVRKEAESCDCLQGFQLTHSLGGGTGSGMVTLLISKIREEYPDRIINTFSILPSPKVSDTVVEPYNATLSVH 118 HSP 2 Score: 23.8682 bits (50), Expect = 2.425e-17 Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1 Query: 619 VHSLSVRHTDVSVLLDNESIYDI 687 VH L + + D + +DNE++YDI Sbjct: 117 VHQL-IENADETFCIDNEALYDI 138
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 3.165e-17 Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 2 Query: 428 ADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 AD C+GLQGFL+FH+ VDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 ADACSGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHT 68 HSP 2 Score: 26.9498 bits (58), Expect = 3.165e-17 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 69 TLEHSDCAFMVDNEAIYDI 87
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 9.958e-17 Identity = 60/191 (31.41%), Postives = 91/191 (47.64%), Query Frame = 2 Query: 59 ECISIHIGQAGIQVGNACWELYCLEHGIQPDG-QMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLS 622 E I+I +GQ G VG W EHGI DG +D +D N FF + ++VPRA+ +DLEP + +V++ ++ LF+P E A N+++ G Y G + D +D I + D+ +GF + H+V Y K ++V+PS Q S VV PYN+VL+ Sbjct: 4 EIITIQVGQCGNHVGKYFWNQLLKEHGIDKDGYSKYNDDLTHIREDDTNPFFKQITNNRYVPRAIMIDLEPAAVTDVQS-SFNDLFNPRNTWVSSEGLGAGNSWSTG-YDRGVQNQDRIMDIIDRELDSTDNFEGFQLLHSVAGGTGSGLGSSLLEALTDRYSKSFITTYSVFPSKQ-SEVVVGPYNTVLT 191
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.218e-16 Identity = 65/192 (33.85%), Postives = 91/192 (47.40%), Query Frame = 2 Query: 59 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQML--SDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLS 622 E ISI +GQ G QVG W EHGI DGQ L D V DD N FF + + PRA+ DLEP+ I +V+ + F+ + KE+ A N ++ G Y G E D ++ I K D +GF + H+V Y KK ++V+PS + S VV+PYN++L+ Sbjct: 4 EIISIQVGQCGNQVGKQFWGQLAREHGIGVDGQSLHPEDANVVREDDT-NVFFRQNDHNRFTPRALLYDLEPSAIGDVQ-NCFPGFFNERNVWISKEELGAGNTWSIG-YDYGLEKQDEFMNMIDKEIDATGNFEGFQLIHSVAGGTGSGLGSNLLEALSDRYHKKIVSTYSVFPSRE-SEVVVQPYNTILT 191
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 7.365e-16 Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = 2 Query: 428 ADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 AD C+GLQGFLVFH+ V+Y KKSKL F+VYP QVST+VVEPYNS+L+TH+ Sbjct: 1 ADQCSGLQGFLVFHSFGGGTGSGFTSLLMERLSVEYSKKSKLEFSVYPDRQVSTAVVEPYNSILTTHT 68 HSP 2 Score: 28.1054 bits (61), Expect = 7.365e-16 Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D S ++DNE+IYDI Sbjct: 69 TLEHSDCSFMVDNEAIYDI 87
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15 Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 2 Query: 431 DNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 D CTGLQGFL+FH+ VDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ Sbjct: 2 DQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHT 68
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.878e-15 Identity = 61/191 (31.94%), Postives = 87/191 (45.55%), Query Frame = 2 Query: 59 ECISIHIGQAGIQVGNACWELYCLEHGIQPDG-QMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQ--LISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLS 622 E I++ GQ G VG W EH I DG L D + DD FF E K PRA+ +D EP+VI +V +R F P + S A N++A G Y IG D L++I K D+ +GF + H+V Y KK ++V+P+ + S VV+ YN++L+ Sbjct: 4 EIITLQAGQCGNHVGKFLWSQLAKEHAIGTDGLSQLPDSSTERDDDT-KPFFRENSRNKFTPRAIMMDSEPSVIADVE-NTFRGFFDPRNTWVASDGASAGNSWANG-YDIGTRNQDDILNKIDKEIDSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPA-RSSEVVVQSYNTILA 190
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 4.564e-15 Identity = 55/204 (26.96%), Postives = 94/204 (46.08%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSET-----GAGKHVP---------RAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLS 622 M + + + +GQ G Q+G W+L EH ++ K G D+A ++FF G G + RAV +D+E V++E+ G R +F +QLI+ + NN+A GH G D L++ RK A++C LQ F + H++ ++ + + ++YPS + + PYNS+L+ Sbjct: 1 MTQSVVVQVGQCGNQIGCCFWDLALREHAA------VNQK--GIYDEAISSFFRNVDTRVVGDGGSISKGKICSLKARAVLIDMEEGVVNEILQGPLRDVFDTKQLITDISGSGNNWAVGHKVFGSLYQDQILEKFRKSAEHCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTSIYPSGE-DDVITSPYNSILA 195 HSP 2 Score: 21.557 bits (44), Expect = 4.564e-15 Identity = 7/16 (43.75%), Postives = 12/16 (75.00%), Query Frame = 1 Query: 640 HTDVSVLLDNESIYDI 687 H D + +DN+S++DI Sbjct: 202 HADCVLPIDNQSLFDI 217 The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 413
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bpback to top |