FC920219

Overview
NameFC920219
Unique NameFC920219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA4_MAIZE (Tubulin alpha-4 chain (Fragments) OS=Zea mays GN=TUBA4 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.623e-20
Identity = 43/50 (86.00%), Postives = 45/50 (90.00%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFN 202
            MRECISIHIGQAGIQVGNACWELYCLEHGIQ DGQM  DKT+GGGD  F+
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPGDKTIGGGDAEFD 50          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.800e-19
Identity = 63/192 (32.81%), Postives = 99/192 (51.56%), Query Frame = 2
Query:   56 RECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPS-PQVSTSVVEPYNSVLS 622
            RE I++ +GQ G Q+G   W     EHGI PDG +    T G   D  + FF +     ++PRA+ +DLEP VI+ ++   ++ L++PE +    +   A NN+A G YT   E  +  +D I +  DN   L+GF++ H++                   Y KK    ++V+P+  + S+ VV PYNSVL+
Sbjct:    3 REIITLQVGQCGNQIGTEFWGRLIAEHGIGPDGIVKEFATEG--TDRKDVFFYQADDQHYIPRALLIDLEPRVINSLQESEFKNLWNPENVYIDSQGGGAGNNWAVG-YTHATEKYEHIMDMIDR-EDNSDSLEGFVLTHSIAGGTGSGFGSHMLEQLTDRYPKKIIQTYSVFPNDSERSSVVVHPYNSVLA 190          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: YI016_HUMAN (Putative tubulin beta chain-like protein ENSP00000290377 OS=Homo sapiens PE=5 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.425e-17
Identity = 43/118 (36.44%), Postives = 67/118 (56.78%), Query Frame = 2
Query:  275 IDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628
            +D VR+G + Q+  P+  I G+  A NN+A+G YT G E+ +  +D +RK A++C  LQGF + H++                  +Y  +    F++ PSP+VS +VVEPYN+ LS H
Sbjct:    1 MDSVRSGPFGQVLRPDNFIFGQCGAGNNWAKGRYTEGAELTESVMDVVRKEAESCDCLQGFQLTHSLGGGTGSGMVTLLISKIREEYPDRIINTFSILPSPKVSDTVVEPYNATLSVH 118          

HSP 2 Score: 23.8682 bits (50), Expect = 2.425e-17
Identity = 10/23 (43.48%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  619 VHSLSVRHTDVSVLLDNESIYDI 687
            VH L + + D +  +DNE++YDI
Sbjct:  117 VHQL-IENADETFCIDNEALYDI 138          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA4_CHICK (Tubulin alpha-4 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.165e-17
Identity = 38/68 (55.88%), Postives = 47/68 (69.12%), Query Frame = 2
Query:  428 ADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            AD C+GLQGFL+FH+                  VDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+
Sbjct:    1 ADACSGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHT 68          

HSP 2 Score: 26.9498 bits (58), Expect = 3.165e-17
Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  631 SVRHTDVSVLLDNESIYDI 687
            ++ H+D + ++DNE+IYDI
Sbjct:   69 TLEHSDCAFMVDNEAIYDI 87          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.958e-17
Identity = 60/191 (31.41%), Postives = 91/191 (47.64%), Query Frame = 2
Query:   59 ECISIHIGQAGIQVGNACWELYCLEHGIQPDG-QMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLS 622
            E I+I +GQ G  VG   W     EHGI  DG    +D      +D  N FF +    ++VPRA+ +DLEP  + +V++ ++  LF+P       E   A N+++ G Y  G +  D  +D I +  D+    +GF + H+V                   Y K     ++V+PS Q S  VV PYN+VL+
Sbjct:    4 EIITIQVGQCGNHVGKYFWNQLLKEHGIDKDGYSKYNDDLTHIREDDTNPFFKQITNNRYVPRAIMIDLEPAAVTDVQS-SFNDLFNPRNTWVSSEGLGAGNSWSTG-YDRGVQNQDRIMDIIDRELDSTDNFEGFQLLHSVAGGTGSGLGSSLLEALTDRYSKSFITTYSVFPSKQ-SEVVVGPYNTVLT 191          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.218e-16
Identity = 65/192 (33.85%), Postives = 91/192 (47.40%), Query Frame = 2
Query:   59 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQML--SDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLS 622
            E ISI +GQ G QVG   W     EHGI  DGQ L   D  V   DD  N FF +    +  PRA+  DLEP+ I +V+   +   F+   +   KE+  A N ++ G Y  G E  D  ++ I K  D     +GF + H+V                   Y KK    ++V+PS + S  VV+PYN++L+
Sbjct:    4 EIISIQVGQCGNQVGKQFWGQLAREHGIGVDGQSLHPEDANVVREDDT-NVFFRQNDHNRFTPRALLYDLEPSAIGDVQ-NCFPGFFNERNVWISKEELGAGNTWSIG-YDYGLEKQDEFMNMIDKEIDATGNFEGFQLIHSVAGGTGSGLGSNLLEALSDRYHKKIVSTYSVFPSRE-SEVVVQPYNTILT 191          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA3_CHICK (Tubulin alpha-3 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.365e-16
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = 2
Query:  428 ADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            AD C+GLQGFLVFH+                  V+Y KKSKL F+VYP  QVST+VVEPYNS+L+TH+
Sbjct:    1 ADQCSGLQGFLVFHSFGGGTGSGFTSLLMERLSVEYSKKSKLEFSVYPDRQVSTAVVEPYNSILTTHT 68          

HSP 2 Score: 28.1054 bits (61), Expect = 7.365e-16
Identity = 10/19 (52.63%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  631 SVRHTDVSVLLDNESIYDI 687
            ++ H+D S ++DNE+IYDI
Sbjct:   69 TLEHSDCSFMVDNEAIYDI 87          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 38/67 (56.72%), Postives = 46/67 (68.66%), Query Frame = 2
Query:  431 DNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631
            D CTGLQGFL+FH+                  VDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+
Sbjct:    2 DQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHT 68          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_YEAST (Tubulin gamma chain OS=Saccharomyces cerevisiae GN=TUB4 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.878e-15
Identity = 61/191 (31.94%), Postives = 87/191 (45.55%), Query Frame = 2
Query:   59 ECISIHIGQAGIQVGNACWELYCLEHGIQPDG-QMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQ--LISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLS 622
            E I++  GQ G  VG   W     EH I  DG   L D +    DD    FF E    K  PRA+ +D EP+VI +V    +R  F P    + S    A N++A G Y IG    D  L++I K  D+    +GF + H+V                   Y KK    ++V+P+ + S  VV+ YN++L+
Sbjct:    4 EIITLQAGQCGNHVGKFLWSQLAKEHAIGTDGLSQLPDSSTERDDDT-KPFFRENSRNKFTPRAIMMDSEPSVIADVE-NTFRGFFDPRNTWVASDGASAGNSWANG-YDIGTRNQDDILNKIDKEIDSTDNFEGFQLLHSVAGGTGSGLGSNLLEALCDRYPKKILTTYSVFPA-RSSEVVVQSYNTILA 190          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.564e-15
Identity = 55/204 (26.96%), Postives = 94/204 (46.08%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSET-----GAGKHVP---------RAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLS 622
            M + + + +GQ G Q+G   W+L   EH        ++ K  G  D+A ++FF        G G  +          RAV +D+E  V++E+  G  R +F  +QLI+    + NN+A GH   G    D  L++ RK A++C  LQ F + H++                  ++ +  +   ++YPS +    +  PYNS+L+
Sbjct:    1 MTQSVVVQVGQCGNQIGCCFWDLALREHAA------VNQK--GIYDEAISSFFRNVDTRVVGDGGSISKGKICSLKARAVLIDMEEGVVNEILQGPLRDVFDTKQLITDISGSGNNWAVGHKVFGSLYQDQILEKFRKSAEHCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTSIYPSGE-DDVITSPYNSILA 195          

HSP 2 Score: 21.557 bits (44), Expect = 4.564e-15
Identity = 7/16 (43.75%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  640 HTDVSVLLDNESIYDI 687
            H D  + +DN+S++DI
Sbjct:  202 HADCVLPIDNQSLFDI 217          
The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
TBA4_MAIZE9.623e-2086.00Tubulin alpha-4 chain (Fragments) OS=Zea mays GN=T... [more]
TBG_RETFI2.800e-1932.81Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV... [more]
YI016_HUMAN2.425e-1736.44Putative tubulin beta chain-like protein ENSP00000... [more]
TBA4_CHICK3.165e-1755.88Tubulin alpha-4 chain (Fragment) OS=Gallus gallus ... [more]
TBG_CANGA9.958e-1731.41Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE... [more]
TBG_ASHGO2.218e-1633.85Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=... [more]
TBA3_CHICK7.365e-1654.41Tubulin alpha-3 chain (Fragment) OS=Gallus gallus ... [more]
TBA8_CHICK1.438e-1556.72Tubulin alpha-8 chain (Fragment) OS=Gallus gallus ... [more]
TBG_YEAST1.878e-1531.94Tubulin gamma chain OS=Saccharomyces cerevisiae GN... [more]
TBE_HUMAN4.564e-1526.96Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32005E05EF RVDevelop1 Citrus clementina cDNA clone C32005E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bp
GACTCTTAATCTCGCAATTCCCGACTCAAATCTCTAACAAAATCACACAA
GAATGAGAGAATGCATCTCAATTCACATCGGCCAGGCCGGTATCCAGGTT
GGTAATGCCTGCTGGGAGCTCTATTGCCTCGAACATGGCATTCAGCCTGA
TGGGCAAATGTTAAGTGACAAAACAGTTGGAGGCGGAGATGATGCTTTCA
ACACATTCTTCAGTGAGACCGGCGCCGGAAAGCACGTTCCACGCGCCGTG
TTTTTGGACCTTGAACCAACTGTAATCGATGAAGTGAGGACTGGCGCCTA
CCGTCAGTTGTTTCACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCTG
CTAACAACTTTGCCAGAGGCCACTATACAATTGGGAAAGAGATTGTGGAT
TTGTGCCTTGATAGGATCAGGAAGTTAGCTGATAACTGTACCGGTCTACA
AGGGTTCCTCGTGTTCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTCG
GGTCTTTGCTCCTTGAGAGGCTTTCTGTTGATTACGGCAAGAAATCGAAA
CTGGGATTTACAGTTTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTGA
GCCTTACAACAGCGTTTTGTCCACTCACTCTCTGTTAGACACACTGACGT
TTCTGTGTTGCTTGACAATGAAAGCATCTACGATATTT
back to top