FC920219

Overview
NameFC920219
Unique NameFC920219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length688
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.320e-15
Identity = 58/190 (30.53%), Postives = 92/190 (48.42%), Query Frame = 2
Query:   65 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVID-EVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS-VVEPYNSVLS 622
            +++H+GQ G Q+  A W+    EHGI   GQ   +  +   +D  +  F +     +VPRAV +DLEP VI+  +++  +  LF+ + +        A NN+A G Y  G+E+ +  +D I + A+N   L G L  H+V                   + KK    ++V+ +   ST  VV PYN VLS
Sbjct:    8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLS 193          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.301e-14
Identity = 56/204 (27.45%), Postives = 93/204 (45.59%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSET-----GAGKHVP---------RAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLS 622
            M + + + +GQ G Q+G   W+L   EH        ++ K  G  DDA ++FF        G G  +          RAV +D+E  V++E+  G  R +F  +QLI+    + NN+A GH   G    +  L+++RK A+ C  LQ F + H++                  ++ +  +    VYPS +    +  PYNS+L+
Sbjct:    1 MTQSVVVQVGQCGNQIGCCFWDLALREHAA------VNQK--GIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSE-DDVITSPYNSMLA 195          

HSP 2 Score: 21.557 bits (44), Expect = 1.301e-14
Identity = 7/16 (43.75%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  640 HTDVSVLLDNESIYDI 687
            H D  + +DN+S++DI
Sbjct:  202 HADCVLPIDNQSLFDI 217          
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13
Identity = 45/145 (31.03%), Postives = 78/145 (53.79%), Query Frame = 2
Query:  200 NTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS--VVEPYNSVLS 622
            + FF +      +PR++ +DLEP VI+ ++   YR L++ E +   +    A NN+A G++  G++ VD  +D + + AD    L+GF++ H++                   Y KK    ++V+P+ QV TS  VV+PYNS+L+
Sbjct:    1 DVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGYHQ-GEQFVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPN-QVETSDVVVQPYNSLLT 143          
The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
TBG_CAEEL9.320e-1530.53Tubulin gamma chain OS=Caenorhabditis elegans GN=t... [more]
TBE_MOUSE1.301e-1427.45Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBG3_MAIZE6.679e-1331.03Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TU... [more]

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Properties
Property NameValue
Genbank descriptionC32005E05EF RVDevelop1 Citrus clementina cDNA clone C32005E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bp
GACTCTTAATCTCGCAATTCCCGACTCAAATCTCTAACAAAATCACACAA
GAATGAGAGAATGCATCTCAATTCACATCGGCCAGGCCGGTATCCAGGTT
GGTAATGCCTGCTGGGAGCTCTATTGCCTCGAACATGGCATTCAGCCTGA
TGGGCAAATGTTAAGTGACAAAACAGTTGGAGGCGGAGATGATGCTTTCA
ACACATTCTTCAGTGAGACCGGCGCCGGAAAGCACGTTCCACGCGCCGTG
TTTTTGGACCTTGAACCAACTGTAATCGATGAAGTGAGGACTGGCGCCTA
CCGTCAGTTGTTTCACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCTG
CTAACAACTTTGCCAGAGGCCACTATACAATTGGGAAAGAGATTGTGGAT
TTGTGCCTTGATAGGATCAGGAAGTTAGCTGATAACTGTACCGGTCTACA
AGGGTTCCTCGTGTTCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTCG
GGTCTTTGCTCCTTGAGAGGCTTTCTGTTGATTACGGCAAGAAATCGAAA
CTGGGATTTACAGTTTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTGA
GCCTTACAACAGCGTTTTGTCCACTCACTCTCTGTTAGACACACTGACGT
TTCTGTGTTGCTTGACAATGAAAGCATCTACGATATTT
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