FC920219
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.320e-15 Identity = 58/190 (30.53%), Postives = 92/190 (48.42%), Query Frame = 2 Query: 65 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVID-EVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS-VVEPYNSVLS 622 +++H+GQ G Q+ A W+ EHGI GQ + + +D + F + +VPRAV +DLEP VI+ +++ + LF+ + + A NN+A G Y G+E+ + +D I + A+N L G L H+V + KK ++V+ + ST VV PYN VLS Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLS 193
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.301e-14 Identity = 56/204 (27.45%), Postives = 93/204 (45.59%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSET-----GAGKHVP---------RAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLS 622 M + + + +GQ G Q+G W+L EH ++ K G DDA ++FF G G + RAV +D+E V++E+ G R +F +QLI+ + NN+A GH G + L+++RK A+ C LQ F + H++ ++ + + VYPS + + PYNS+L+ Sbjct: 1 MTQSVVVQVGQCGNQIGCCFWDLALREHAA------VNQK--GIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSE-DDVITSPYNSMLA 195 HSP 2 Score: 21.557 bits (44), Expect = 1.301e-14 Identity = 7/16 (43.75%), Postives = 12/16 (75.00%), Query Frame = 1 Query: 640 HTDVSVLLDNESIYDI 687 H D + +DN+S++DI Sbjct: 202 HADCVLPIDNQSLFDI 217
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.679e-13 Identity = 45/145 (31.03%), Postives = 78/145 (53.79%), Query Frame = 2 Query: 200 NTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS--VVEPYNSVLS 622 + FF + +PR++ +DLEP VI+ ++ YR L++ E + + A NN+A G++ G++ VD +D + + AD L+GF++ H++ Y KK ++V+P+ QV TS VV+PYNS+L+ Sbjct: 1 DVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGYHQ-GEQFVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPN-QVETSDVVVQPYNSLLT 143 The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 413
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bpback to top |