FC920219
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1C_RAT (Tubulin alpha-1C chain OS=Rattus norvegicus GN=Tuba1c PE=1 SV=1) HSP 1 Score: 328.561 bits (841), Expect = 9.952e-91 Identity = 153/193 (79.27%), Postives = 170/193 (88.08%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 9.952e-91 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1C_MOUSE (Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c PE=1 SV=1) HSP 1 Score: 328.561 bits (841), Expect = 9.952e-91 Identity = 153/193 (79.27%), Postives = 170/193 (88.08%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 9.952e-91 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1C_HUMAN (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1) HSP 1 Score: 328.561 bits (841), Expect = 9.952e-91 Identity = 153/193 (79.27%), Postives = 170/193 (88.08%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 9.952e-91 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1C_CRIGR (Tubulin alpha-1C chain OS=Cricetulus griseus GN=TUBA1C PE=2 SV=1) HSP 1 Score: 328.561 bits (841), Expect = 9.952e-91 Identity = 153/193 (79.27%), Postives = 170/193 (88.08%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVFH+ VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 9.952e-91 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_DROME (Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1) HSP 1 Score: 328.176 bits (840), Expect = 1.298e-90 Identity = 153/193 (79.27%), Postives = 169/193 (87.56%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKTVGGGDD+FNTFFSETGAGKHVPRAVF+DLEPTV+DEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+FH+ VDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 1.298e-90 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA_XENLA (Tubulin alpha chain OS=Xenopus laevis GN=tuba PE=2 SV=2) HSP 1 Score: 328.176 bits (840), Expect = 1.298e-90 Identity = 153/193 (79.27%), Postives = 169/193 (87.56%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECISIH+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVFH+ VDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 1.298e-90 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1_ARATH (Tubulin alpha-1 chain OS=Arabidopsis thaliana GN=TUBA1 PE=2 SV=1) HSP 1 Score: 320.087 bits (819), Expect = 2.209e-90 Identity = 155/193 (80.31%), Postives = 166/193 (86.01%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRE ISIHIGQAGIQVGN+CWELYCLEHGIQPDG M SD TVG DAFNTFFSET +G+HVPRAVFLDLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVD CL+R+RKLADNCTGLQGFLVF+AV VD+GKKSKLGFT+YPSPQVST+VVEPYNSVLSTHS Sbjct: 1 MREIISIHIGQAGIQVGNSCWELYCLEHGIQPDGTMPSDSTVGACHDAFNTFFSETSSGQHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDTCLERLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDFGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHS 193 HSP 2 Score: 34.2686 bits (77), Expect = 2.209e-90 Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 1 Query: 622 HSLSVRHTDVSVLLDNESIYDI 687 HSL + HTDV VLLDNE+IYDI Sbjct: 192 HSL-LEHTDVVVLLDNEAIYDI 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBAN_PHYPO (Tubulin alpha-1B chain OS=Physarum polycephalum GN=ALTBN PE=2 SV=2) HSP 1 Score: 323.939 bits (829), Expect = 2.209e-90 Identity = 154/192 (80.21%), Postives = 166/192 (86.46%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628 MRE ISIHIGQAG QVGNACWELYCLEHGI PDGQM SDK+VGGGDDAFNTFFSET +GKHVPRA++LDLEPTVIDE+RTG YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIVDLCLDR+RKLAD C+GLQGFLVFH+V VDYGKKSKL F VYPSPQVST+VVEPYNSVLSTH Sbjct: 1 MREIISIHIGQAGAQVGNACWELYCLEHGINPDGQMPSDKSVGGGDDAFNTFFSETSSGKHVPRAIYLDLEPTVIDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIVDLCLDRVRKLADQCSGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKSKLDFCVYPSPQVSTAVVEPYNSVLSTH 192 HSP 2 Score: 30.4166 bits (67), Expect = 2.209e-90 Identity = 11/18 (61.11%), Postives = 16/18 (88.89%), Query Frame = 1 Query: 634 VRHTDVSVLLDNESIYDI 687 + HTDV+ +LDNE+IYD+ Sbjct: 195 LEHTDVAFMLDNEAIYDL 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBAE_PHYPO (Tubulin alpha-2B chain OS=Physarum polycephalum GN=ALTBE PE=2 SV=1) HSP 1 Score: 323.939 bits (829), Expect = 2.209e-90 Identity = 153/192 (79.69%), Postives = 167/192 (86.98%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTH 628 MRE +SIHIGQAG QVGNACWELYCLEHGI+PDGQM SDK+VGGGDDAFNTFFSET +GKHVPRA+FLDLEPTVIDE+RTG YRQLFHPEQLI+GKEDAANN+ARGHYT+GKE+VDLCLDR+RKLAD C+GLQGFLVFH+V VDYGKKSKL F VYPSPQVST+VVEPYNSVLSTH Sbjct: 1 MREILSIHIGQAGAQVGNACWELYCLEHGIKPDGQMPSDKSVGGGDDAFNTFFSETSSGKHVPRAIFLDLEPTVIDEIRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELVDLCLDRVRKLADQCSGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKSKLDFCVYPSPQVSTAVVEPYNSVLSTH 192 HSP 2 Score: 30.4166 bits (67), Expect = 2.209e-90 Identity = 11/18 (61.11%), Postives = 16/18 (88.89%), Query Frame = 1 Query: 634 VRHTDVSVLLDNESIYDI 687 + HTDV+ +LDNE+IYD+ Sbjct: 195 LEHTDVAFMLDNEAIYDL 212
BLAST of FC920219 vs. ExPASy Swiss-Prot
Match: TBA1D_BOVIN (Tubulin alpha-1D chain OS=Bos taurus GN=TUBA1D PE=1 SV=1) HSP 1 Score: 327.02 bits (837), Expect = 2.882e-90 Identity = 150/193 (77.72%), Postives = 170/193 (88.08%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHS 631 MRECIS+H+GQAG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKE++DL LDRIRKLAD CTGLQGFL+FH+ VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ Sbjct: 1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHT 193 HSP 2 Score: 26.9498 bits (58), Expect = 2.882e-90 Identity = 9/19 (47.37%), Postives = 16/19 (84.21%), Query Frame = 1 Query: 631 SVRHTDVSVLLDNESIYDI 687 ++ H+D + ++DNE+IYDI Sbjct: 194 TLEHSDCAFMVDNEAIYDI 212 The following BLAST results are available for this feature:
BLAST of FC920219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 413
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920219 ID=FC920219; Name=FC920219; organism=Citrus clementina; type=EST; length=688bpback to top |