FC920229

Overview
NameFC920229
Unique NameFC920229
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_DROME (Eukaryotic translation initiation factor 2 subunit 3 OS=Drosophila melanogaster GN=Su(var)3-9 PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.966e-60
Identity = 119/160 (74.38%), Postives = 133/160 (83.12%), Query Frame = 1
Query:  220 KGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENC--RMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            + L +QDLS LDV+KL PLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKC++ +CPRP  + +  S K+D+  C      NC    +L+RHVSFVDCPGHDILMATMLNGAA+MD ALLLIA NE CP+ Q
Sbjct:   12 RNLQKQDLSNLDVSKLTPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCDNPKCPRPASFVSDASSKDDSLPCT---RLNCSGNFRLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQ 168          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_DICDI (Eukaryotic translation initiation factor 2 subunit 3 OS=Dictyostelium discoideum GN=eif2s3 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.708e-59
Identity = 114/160 (71.25%), Postives = 130/160 (81.25%), Query Frame = 1
Query:  214 SRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            ++  L  QD+  L+V +L PL+P VISRQATINIGTIGHVAHGKSTVVKAISGV TVRF +E +RNITIKLGYANAKIYKC++ +C RP CYK+  S  EDNP C+ PG    RM LLRHVSFVDCPGHD+LMATMLNGAA+MD ALLLIA NE CP+ Q
Sbjct:    5 NKPNLSVQDVKLLNVNELTPLTPNVISRQATINIGTIGHVAHGKSTVVKAISGVLTVRFTSEFKRNITIKLGYANAKIYKCDNPQCERPGCYKSARSNTEDNPQCERPGCGG-RMTLLRHVSFVDCPGHDVLMATMLNGAAVMDAALLLIAGNESCPQPQ 163          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_ENCCU (Eukaryotic translation initiation factor 2 subunit gamma OS=Encephalitozoon cuniculi GN=ECU01_0700 PE=3 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.479e-49
Identity = 95/137 (69.34%), Postives = 111/137 (81.02%), Query Frame = 1
Query:  283 EVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            E++ +QAT+NIGTIGHVAHGKST+VKAISG+ T++FK ELERNITIKLGYANAKIYKC D +C RP CY+++GS   D   C   G     +KL+RHVSFVDCPGHD+LMATMLNG AIMD  LLLIAANE CP+ Q
Sbjct:    6 EIMKKQATLNIGTIGHVAHGKSTIVKAISGISTIKFKAELERNITIKLGYANAKIYKC-DSKCVRPNCYQSFGSSSPDRLSCKKCG---GTLKLVRHVSFVDCPGHDVLMATMLNGTAIMDAVLLLIAANEPCPQPQ 138          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_ARCFU (Translation initiation factor 2 subunit gamma OS=Archaeoglobus fulgidus GN=eif2g PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.052e-29
Identity = 70/129 (54.26%), Postives = 88/129 (68.22%), Query Frame = 1
Query:  307 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            +NIG +GHV HGK+T+V A+SGV T R   EL+R I+IKLGYA+A   KC +  C  P  Y           +C + G E    ++LR VSFVD PGH++LMATML+GAAIMDGA+L+IAANE CPR Q
Sbjct:   26 VNIGLVGHVDHGKTTLVAALSGVWTDRHSEELKRGISIKLGYADATFRKCPE--CEPPEAYTV-------EEICPIHGVET---EILRTVSFVDSPGHEMLMATMLSGAAIMDGAVLVIAANEKCPRPQ 142          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_SPIVO (Eukaryotic translation initiation factor 2 subunit gamma (Fragment) OS=Spironucleus vortens PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.061e-29
Identity = 64/124 (51.61%), Postives = 82/124 (66.13%), Query Frame = 1
Query:  322 IGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            IGHVAHGKST+ K ++GV  ++F  E   NITIKLG+ANAKI++C+D  C  P  Y +  S   D P C  P  +    +LLRH+S +DCPGH   M TML+G A MDG LLLI+A + CP+ Q
Sbjct:    1 IGHVAHGKSTLCKVLTGVDPIKFAAEKVNNITIKLGFANAKIFECKD--CAAPKNYFSQKSSSPDQPPC--PTCKGTHTQLLRHISIIDCPGHHDYMTTMLSGVAAMDGTLLLISAEQRCPQEQ 120          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_METTH (Translation initiation factor 2 subunit gamma OS=Methanobacterium thermoautotrophicum GN=eif2g PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.061e-29
Identity = 69/135 (51.11%), Postives = 89/135 (65.93%), Query Frame = 1
Query:  289 ISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            +  Q+ INIG +GHV HGK+T+ KA+SGV T     E +R I+I+LGYA+    KC   +C  PMCY           +C+  G E    +LLR VSFVD PGH+ LMATML+GAA+MDGA+L+IAANE CP+ Q
Sbjct:    1 MKNQSEINIGLVGHVDHGKTTLTKALSGVWTDTHSEETKRGISIRLGYADITFRKCP--QCEAPMCYTTA-------EICERCGTET---ELLRKVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQ 123          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_AERPE (Translation initiation factor 2 subunit gamma OS=Aeropyrum pernix GN=eif2g PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.222e-29
Identity = 64/133 (48.12%), Postives = 88/133 (66.17%), Query Frame = 1
Query:  295 RQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            RQ  +NIG +GHV HGK+T+V+A++GV T+R   E+ R +TIKLGYA+ ++++CE    P               P+C+          L R VS+VD PGH+ILMATML+GAA+MDGALL++AANE CP+ Q
Sbjct:    7 RQPEVNIGVVGHVDHGKTTLVQALTGVWTMRHSEEIRRGMTIKLGYADGEVWECEGCGFPERF---------SPEPVCECD--PQASASLRRRVSYVDAPGHEILMATMLSGAALMDGALLVVAANEPCPQPQ 128          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_METAC (Translation initiation factor 2 subunit gamma OS=Methanosarcina acetivorans GN=eif2g PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.908e-29
Identity = 71/145 (48.97%), Postives = 88/145 (60.69%), Query Frame = 1
Query:  265 LHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRH--VSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            LH         Q  +NIG +GHV HGK+T+VKA+SGV T     E++R I+I+LGYA++   KC   +CP P CY            C      NC  K   H  VSFVD PGH+ LMATML+GAAIMDGA+L+IAANE CP+ Q
Sbjct:   27 LHSTGGNYNLSQPCVNIGMVGHVDHGKTTLVKALSGVWTDTHSEEVKRGISIRLGYADSPFMKCP--KCPAPQCYTV-------EKTCP-----NCGEKTEEHRIVSFVDAPGHETLMATMLSGAAIMDGAVLVIAANEECPQPQ 157          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_METMA (Translation initiation factor 2 subunit gamma OS=Methanosarcina mazei GN=eif2g PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.984e-28
Identity = 68/134 (50.75%), Postives = 86/134 (64.18%), Query Frame = 1
Query:  298 QATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRH--VSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            Q  +NIG +GHV HGK+T+V+A+SGV T     E++R I+I+LGYA++   KC   +CP P CY            C      NC  K   H  VSFVD PGH+ LMATML+GAAIMDGA+L+IAANE CP+ Q
Sbjct:   26 QPCVNIGMVGHVDHGKTTLVRALSGVWTDTHSEEVKRGISIRLGYADSPFMKCP--KCPEPQCYTV-------EKTCP-----NCGEKTEEHRTVSFVDAPGHETLMATMLSGAAIMDGAVLVIAANEDCPQPQ 145          
BLAST of FC920229 vs. ExPASy Swiss-Prot
Match: IF2G_PYRAB (Translation initiation factor 2 subunit gamma OS=Pyrococcus abyssi GN=eif2g PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.421e-28
Identity = 66/134 (49.25%), Postives = 88/134 (65.67%), Query Frame = 1
Query:  292 SRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANEXCPRTQ 693
            SRQA +NIG +GHV HGK+T+ KA++GV T     EL R ITIK+G+A+A+I +C       P C +        +P+C   G E    + +R VSF+D PGH+ LM TML GA++MDGA+L+IAANE CPR Q
Sbjct:    7 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRC-------PNCGR-----YSTSPVCPYCGHET---EFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQ 125          
The following BLAST results are available for this feature:
BLAST of FC920229 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
IF2G_DROME1.966e-6074.38Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_DICDI3.708e-5971.25Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_ENCCU3.479e-4969.34Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_ARCFU1.052e-2954.26Translation initiation factor 2 subunit gamma OS=A... [more]
IF2G_SPIVO3.061e-2951.61Eukaryotic translation initiation factor 2 subunit... [more]
IF2G_METTH3.061e-2951.11Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_AERPE5.222e-2948.12Translation initiation factor 2 subunit gamma OS=A... [more]
IF2G_METAC8.908e-2948.97Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_METMA1.984e-2850.75Translation initiation factor 2 subunit gamma OS=M... [more]
IF2G_PYRAB4.421e-2849.25Translation initiation factor 2 subunit gamma OS=P... [more]

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Properties
Property NameValue
Genbank descriptionC32005F04EF RVDevelop1 Citrus clementina cDNA clone C32005F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920229 ID=FC920229; Name=FC920229; organism=Citrus clementina; type=EST; length=696bp
GGATCGCAAGAAGTCCCCCAAAACCTAAAATTCTCTCTCACACACACACC
CTCTCACAATCAATATAGCGGTAAACCTCAGTCAAATCTCGGTCTCGCAG
TCGTTCTCCGGTCGCAACTTGCTCTGCATTCAATCAGTTTTACGGGCTTG
AACATTACTAGTGGCAATACAGACAATAAGGAGAGGGGTATTTTCAAAGA
AACAGGCAAGATGTCACGGAAGGGTTTGATGGAACAGGACTTGAGTAAGT
TGGATGTAACTAAGTTGCATCCTCTTTCTCCTGAAGTCATTTCTCGCCAG
GCTACTATTAATATTGGAACTATCGGTCATGTGGCCCATGGCAAATCAAC
TGTTGTGAAGGCAATATCTGGTGTTCAGACTGTTCGTTTTAAGAATGAAT
TAGAGCGTAACATTACTATCAAGCTTGGATATGCAAATGCCAAGATATAC
AAATGTGAAGATGATCGTTGCCCACGACCAATGTGCTATAAGGCATATGG
AAGTGGGAAAGAAGATAATCCTCTGTGCGATGTGCCTGGTTTTGAGAACT
GCAGGATGAAATTGCTTAGGCATGTCTCTTTTGTTGATTGCCCGGGTCAT
GATATTCTTATGGCTACNATGCTTAATGGAGCAGCAATTATGGATGGAGC
ATTGCTTCTCATAGCAGCCAATGAAAGNTGCCCCCGCACACAACAT
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