FC920231
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_SHIFL (Ribulose-phosphate 3-epimerase OS=Shigella flexneri GN=rpe PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.092e-36 Identity = 78/148 (52.70%), Postives = 105/148 (70.95%), Query Frame = 2 Query: 236 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676 +++PSILSA+FA+LGE AG D +H DVMD +VPN+TIGP+V+ +LR P+DVHLM+ ++ VPDF AGA I++ H E S H+ RTL IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFGG SF Sbjct: 5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSF 150
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_RHOCA (Ribulose-phosphate 3-epimerase OS=Rhodobacter capsulatus GN=cbbE PE=3 SV=2) HSP 1 Score: 153.295 bits (386), Expect = 1.092e-36 Identity = 73/148 (49.32%), Postives = 99/148 (66.89%), Query Frame = 2 Query: 233 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676 I ++PSILSA+FA G +++A+E G DW+HVDVMDG FVPN+T GP V A R +DVHLMI + + + +AGAD+++ H E H+HRTL I+ G K+GV +NP T AIE VLD+ D+V +M+VNPGFGG + Sbjct: 7 IKIAPSILSADFADFGREIQAIEAQGADWVHVDVMDGHFVPNLTFGPPAVAAFRKHVKTVMDVHLMISPVDAYIDAYAQAGADVLTAHVEAGP--HIHRTLQAIRAAGMKSGVAINPGTPAEAIEHVLDIADVVCVMTVNPGFGGQKY 152
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_ECOLI (Ribulose-phosphate 3-epimerase OS=Escherichia coli (strain K12) GN=rpe PE=1 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.092e-36 Identity = 78/148 (52.70%), Postives = 105/148 (70.95%), Query Frame = 2 Query: 236 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676 +++PSILSA+FA+LGE AG D +H DVMD +VPN+TIGP+V+ +LR P+DVHLM+ ++ VPDF AGA I++ H E S H+ RTL IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFGG SF Sbjct: 5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSF 150
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_ECOL6 (Ribulose-phosphate 3-epimerase OS=Escherichia coli O6 GN=rpe PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.092e-36 Identity = 78/148 (52.70%), Postives = 105/148 (70.95%), Query Frame = 2 Query: 236 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676 +++PSILSA+FA+LGE AG D +H DVMD +VPN+TIGP+V+ +LR P+DVHLM+ ++ VPDF AGA I++ H E S H+ RTL IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFGG SF Sbjct: 5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSF 150
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_ECO57 (Ribulose-phosphate 3-epimerase OS=Escherichia coli O157:H7 GN=rpe PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.092e-36 Identity = 78/148 (52.70%), Postives = 105/148 (70.95%), Query Frame = 2 Query: 236 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676 +++PSILSA+FA+LGE AG D +H DVMD +VPN+TIGP+V+ +LR P+DVHLM+ ++ VPDF AGA I++ H E S H+ RTL IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFGG SF Sbjct: 5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSF 150
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_BUCAI (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpe PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 2.434e-36 Identity = 74/147 (50.34%), Postives = 107/147 (72.79%), Query Frame = 2 Query: 239 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676 ++PSILSA+FA+LGE +K V AG D IH DVMD +VPN+++GP+++++LR P+DVHLM+ + +P F KAGA ++ H E +T+H+ RTLN IK+ G KAG+ NPAT L+ ++ +L+ +DL+L+MSVNPGFG SF Sbjct: 6 LAPSILSADFARLGEDIKKVIDAGSDLIHFDVMDNHYVPNLSMGPMILESLRNYNITAPIDVHLMVKPVDNLIPQFAKAGATFITFHPE--ATLHIERTLNLIKENGCKAGLAFNPATPLNFLDYILEKLDLILLMSVNPGFGNQSF 150
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_HAEIN (Ribulose-phosphate 3-epimerase OS=Haemophilus influenzae GN=rpe PE=3 SV=1) HSP 1 Score: 150.984 bits (380), Expect = 5.422e-36 Identity = 78/148 (52.70%), Postives = 104/148 (70.27%), Query Frame = 2 Query: 236 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676 +++PSILSA+ A+LG+ V+ V AG D IH DVMD +VPN+T GP V ALR P+DVHLM+ ++ +PDF KAGA+ ++ H E S H+ R+L I+D G K+G+V NPA LS ++ VLD VD+VL+MSVNPGFGG SF Sbjct: 5 LIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYGITAPIDVHLMVKPVDRIIPDFAKAGANYITFHPESSE--HIDRSLQLIRDCGCKSGLVFNPAMPLSYLDYVLDKVDVVLLMSVNPGFGGQSF 150
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_RHORU (Ribulose-phosphate 3-epimerase OS=Rhodospirillum rubrum GN=cbbE PE=3 SV=2) HSP 1 Score: 145.976 bits (367), Expect = 1.744e-34 Identity = 75/148 (50.68%), Postives = 102/148 (68.92%), Query Frame = 2 Query: 233 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676 I ++PS+LSA+FA + + G D +H DVMD +VPN+T+GPLV ALRP T LP+DVHLM + + F +AGAD+++ H E S H+HR++ I+ G KAGV LNPA+ LS ++ +L+ +DLVLIMSVNPGFGG SF Sbjct: 5 IRIAPSLLSADFAISRPRCPSDGRTGADILHFDVMDNHYVPNLTVGPLVCAALRPHTSLPIDVHLMTRPVDPLIDSFAEAGADMITFHPEASD--HVHRSVQMIRKRGLKAGVALNPASPLSLLDHILEDLDLVLIMSVNPGFGGQSF 150
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_TREPA (Ribulose-phosphate 3-epimerase OS=Treponema pallidum GN=rpe PE=1 SV=1) HSP 1 Score: 140.198 bits (352), Expect = 9.570e-33 Identity = 67/143 (46.85%), Postives = 96/143 (67.13%), Query Frame = 2 Query: 239 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGG 667 ++PS+LSA+F+ L + +E G W+H+DVMDG FVPN+T G V+ LR T LP DVHLM+ P + DF++AGAD ++ H E + +H HR ++ I+ G K G+ L P+T ++A+ VL VDLVL+M+VNPGF G Sbjct: 7 LAPSLLSADFSALDRALVYLEAHGAQWVHLDVMDGHFVPNLTFGAPVLRCLRSKTHLPFDVHLMVSRPADLIEDFVQAGADFLTFHIE--AEVHAHRLIHAIRGRGVKVGISLVPSTPVAALSEVLPFVDLVLVMTVNPGFSG 147
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_STRCO (Ribulose-phosphate 3-epimerase OS=Streptomyces coelicolor GN=rpe PE=3 SV=1) HSP 1 Score: 137.887 bits (346), Expect = 4.749e-32 Identity = 70/146 (47.95%), Postives = 100/146 (68.49%), Query Frame = 2 Query: 239 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676 ++PSILSA+FA+L ++ KAVE G DW+HVDVMD FVPN+T+G VV++L TD PLD HLMI P++ P +++AGA V+ H E ++ R +I+ GA+A + L PAT + E +L +D++LIM+V PGFGG +F Sbjct: 5 INPSILSADFARLADEAKAVE--GADWLHVDVMDNHFVPNLTLGVPVVESLARATDTPLDCHLMIEAPDRWAPQYVEAGAGSVTFHAEAAAA--PVRLAREIRAKGARASMALKPATPVEPYEDLLPELDMLLIMTVEPGFGGQAF 146 The following BLAST results are available for this feature:
BLAST of FC920231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 46
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920231 ID=FC920231; Name=FC920231; organism=Citrus clementina; type=EST; length=677bpback to top |