FC920231

Overview
NameFC920231
Unique NameFC920231
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9463 contig Ccv1_Contig9463:62..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_SHIFL (Ribulose-phosphate 3-epimerase OS=Shigella flexneri GN=rpe PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.092e-36
Identity = 78/148 (52.70%), Postives = 105/148 (70.95%), Query Frame = 2
Query:  236 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            +++PSILSA+FA+LGE       AG D +H DVMD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S   H+ RTL  IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFGG SF
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSF 150          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_RHOCA (Ribulose-phosphate 3-epimerase OS=Rhodobacter capsulatus GN=cbbE PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.092e-36
Identity = 73/148 (49.32%), Postives = 99/148 (66.89%), Query Frame = 2
Query:  233 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            I ++PSILSA+FA  G +++A+E  G DW+HVDVMDG FVPN+T GP  V A R      +DVHLMI   +  +  + +AGAD+++ H E     H+HRTL  I+  G K+GV +NP T   AIE VLD+ D+V +M+VNPGFGG  +
Sbjct:    7 IKIAPSILSADFADFGREIQAIEAQGADWVHVDVMDGHFVPNLTFGPPAVAAFRKHVKTVMDVHLMISPVDAYIDAYAQAGADVLTAHVEAGP--HIHRTLQAIRAAGMKSGVAINPGTPAEAIEHVLDIADVVCVMTVNPGFGGQKY 152          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_ECOLI (Ribulose-phosphate 3-epimerase OS=Escherichia coli (strain K12) GN=rpe PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.092e-36
Identity = 78/148 (52.70%), Postives = 105/148 (70.95%), Query Frame = 2
Query:  236 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            +++PSILSA+FA+LGE       AG D +H DVMD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S   H+ RTL  IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFGG SF
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSF 150          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_ECOL6 (Ribulose-phosphate 3-epimerase OS=Escherichia coli O6 GN=rpe PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.092e-36
Identity = 78/148 (52.70%), Postives = 105/148 (70.95%), Query Frame = 2
Query:  236 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            +++PSILSA+FA+LGE       AG D +H DVMD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S   H+ RTL  IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFGG SF
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSF 150          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_ECO57 (Ribulose-phosphate 3-epimerase OS=Escherichia coli O157:H7 GN=rpe PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.092e-36
Identity = 78/148 (52.70%), Postives = 105/148 (70.95%), Query Frame = 2
Query:  236 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            +++PSILSA+FA+LGE       AG D +H DVMD  +VPN+TIGP+V+ +LR      P+DVHLM+   ++ VPDF  AGA I++ H E S   H+ RTL  IK+ G KAG+V NPAT LS ++ V+D +D++L+MSVNPGFGG SF
Sbjct:    5 LIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASE--HVDRTLQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSF 150          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_BUCAI (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpe PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.434e-36
Identity = 74/147 (50.34%), Postives = 107/147 (72.79%), Query Frame = 2
Query:  239 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            ++PSILSA+FA+LGE +K V  AG D IH DVMD  +VPN+++GP+++++LR      P+DVHLM+   +  +P F KAGA  ++ H E  +T+H+ RTLN IK+ G KAG+  NPAT L+ ++ +L+ +DL+L+MSVNPGFG  SF
Sbjct:    6 LAPSILSADFARLGEDIKKVIDAGSDLIHFDVMDNHYVPNLSMGPMILESLRNYNITAPIDVHLMVKPVDNLIPQFAKAGATFITFHPE--ATLHIERTLNLIKENGCKAGLAFNPATPLNFLDYILEKLDLILLMSVNPGFGNQSF 150          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_HAEIN (Ribulose-phosphate 3-epimerase OS=Haemophilus influenzae GN=rpe PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.422e-36
Identity = 78/148 (52.70%), Postives = 104/148 (70.27%), Query Frame = 2
Query:  236 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            +++PSILSA+ A+LG+ V+ V  AG D IH DVMD  +VPN+T GP V  ALR      P+DVHLM+   ++ +PDF KAGA+ ++ H E S   H+ R+L  I+D G K+G+V NPA  LS ++ VLD VD+VL+MSVNPGFGG SF
Sbjct:    5 LIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYGITAPIDVHLMVKPVDRIIPDFAKAGANYITFHPESSE--HIDRSLQLIRDCGCKSGLVFNPAMPLSYLDYVLDKVDVVLLMSVNPGFGGQSF 150          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_RHORU (Ribulose-phosphate 3-epimerase OS=Rhodospirillum rubrum GN=cbbE PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.744e-34
Identity = 75/148 (50.68%), Postives = 102/148 (68.92%), Query Frame = 2
Query:  233 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            I ++PS+LSA+FA    +  +    G D +H DVMD  +VPN+T+GPLV  ALRP T LP+DVHLM    +  +  F +AGAD+++ H E S   H+HR++  I+  G KAGV LNPA+ LS ++ +L+ +DLVLIMSVNPGFGG SF
Sbjct:    5 IRIAPSLLSADFAISRPRCPSDGRTGADILHFDVMDNHYVPNLTVGPLVCAALRPHTSLPIDVHLMTRPVDPLIDSFAEAGADMITFHPEASD--HVHRSVQMIRKRGLKAGVALNPASPLSLLDHILEDLDLVLIMSVNPGFGGQSF 150          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_TREPA (Ribulose-phosphate 3-epimerase OS=Treponema pallidum GN=rpe PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.570e-33
Identity = 67/143 (46.85%), Postives = 96/143 (67.13%), Query Frame = 2
Query:  239 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGG 667
            ++PS+LSA+F+ L   +  +E  G  W+H+DVMDG FVPN+T G  V+  LR  T LP DVHLM+  P   + DF++AGAD ++ H E  + +H HR ++ I+  G K G+ L P+T ++A+  VL  VDLVL+M+VNPGF G
Sbjct:    7 LAPSLLSADFSALDRALVYLEAHGAQWVHLDVMDGHFVPNLTFGAPVLRCLRSKTHLPFDVHLMVSRPADLIEDFVQAGADFLTFHIE--AEVHAHRLIHAIRGRGVKVGISLVPSTPVAALSEVLPFVDLVLVMTVNPGFSG 147          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_STRCO (Ribulose-phosphate 3-epimerase OS=Streptomyces coelicolor GN=rpe PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.749e-32
Identity = 70/146 (47.95%), Postives = 100/146 (68.49%), Query Frame = 2
Query:  239 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            ++PSILSA+FA+L ++ KAVE  G DW+HVDVMD  FVPN+T+G  VV++L   TD PLD HLMI  P++  P +++AGA  V+ H E ++     R   +I+  GA+A + L PAT +   E +L  +D++LIM+V PGFGG +F
Sbjct:    5 INPSILSADFARLADEAKAVE--GADWLHVDVMDNHFVPNLTLGVPVVESLARATDTPLDCHLMIEAPDRWAPQYVEAGAGSVTFHAEAAAA--PVRLAREIRAKGARASMALKPATPVEPYEDLLPELDMLLIMTVEPGFGGQAF 146          
The following BLAST results are available for this feature:
BLAST of FC920231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RPE_SHIFL1.092e-3652.70Ribulose-phosphate 3-epimerase OS=Shigella flexner... [more]
RPE_RHOCA1.092e-3649.32Ribulose-phosphate 3-epimerase OS=Rhodobacter caps... [more]
RPE_ECOLI1.092e-3652.70Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_ECOL61.092e-3652.70Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_ECO571.092e-3652.70Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_BUCAI2.434e-3650.34Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE_HAEIN5.422e-3652.70Ribulose-phosphate 3-epimerase OS=Haemophilus infl... [more]
RPE_RHORU1.744e-3450.68Ribulose-phosphate 3-epimerase OS=Rhodospirillum r... [more]
RPE_TREPA9.570e-3346.85Ribulose-phosphate 3-epimerase OS=Treponema pallid... [more]
RPE_STRCO4.749e-3247.95Ribulose-phosphate 3-epimerase OS=Streptomyces coe... [more]

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Properties
Property NameValue
Genbank descriptionC32005F06EF RVDevelop1 Citrus clementina cDNA clone C32005F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920231 ID=FC920231; Name=FC920231; organism=Citrus clementina; type=EST; length=677bp
GACTAGCCATAACCAAACCAACAGCTACGTTTTAGAGAGAGAAACAAAAA
AGAGCGTCAAGATGTCTACAGGCTCGCTGTGTTCATCAACGACTCAGATC
AATGGCTTTACAGGTGGTTTCATGTTGCAGAAAACCAATCTTAATCAGCC
CAGTTCACTTAGTTTTACAAGGAGGAGAATTCATACTATAGTGAAGGCAT
CAGCTCGTGTGGATAAGTTCTCGAAAAGTGATATTATTGTTTCTCCATCT
ATTCTCTCTGCTAATTTTGCGAAGTTAGGCGAGCAGGTAAAAGCAGTGGA
ATTGGCTGGTTGTGATTGGATTCATGTTGATGTCATGGATGGTCGTTTTG
TTCCAAACATTACAATTGGACCTCTTGTGGTTGATGCCTTGCGCCCTGTG
ACAGACCTTCCTTTGGATGTTCATTTGATGATTGTCGAACCTGAACAACG
AGTGCCTGATTTTATCAAGGCTGGAGCAGACATAGTCAGCGTCCACTGTG
AGCAATCATCCACCATTCATTTGCACCGCACTCTTAACCAAATAAAAGAT
TTGGGAGCTAAAGCTGGAGTTGTCCTTAACCCTGCTACCTCACTGAGTGC
AATAGAATGTGTCCTTGATGTGGTTGATCTTGTCTTGATCATGTCGGTGA
ACCCTGGCTTTGGTGGGGCAAGCTTTA
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