FC920231

Overview
NameFC920231
Unique NameFC920231
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9463 contig Ccv1_Contig9463:62..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_CHLTR (Ribulose-phosphate 3-epimerase OS=Chlamydia trachomatis GN=rpe PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.445e-30
Identity = 67/157 (42.68%), Postives = 99/157 (63.06%), Query Frame = 2
Query:  206 RVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            R +   K  ++V+PSI+ A+ A +G + + +E +G D IH+DVMDG FVPNIT GP VV A+   T+L L+VH MI  P + V  F+KAGAD + VH E +  I     ++ I+  G +AGV  +P TS+  +   + + D++L+MSV+PGF G  F
Sbjct:    2 REEAMKKQGVLVAPSIMGADLACIGREARNIEESGADLIHIDVMDGHFVPNITFGPGVVAAINRSTELFLEVHAMIYTPFEFVEAFVKAGADRIIVHFEAAENI--KEIISYIQKCGVQAGVAFSPETSIEFVTSFIPLCDVILLMSVHPGFCGQKF 156          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_MYCTU (Ribulose-phosphate 3-epimerase OS=Mycobacterium tuberculosis GN=rpe PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 69/147 (46.94%), Postives = 96/147 (65.31%), Query Frame = 2
Query:  236 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            +++PSIL+A+FA+L ++  AV   G DW+HVDVMDG FVPN+TIG  VV++L  VTD+P+D HLMI  P++  P + +AGA  V+ H E  +T +       I+  GAKAG+ + P T L     +L   D +L+MSV PGFGG  F
Sbjct:    9 LIAPSILAADFARLADEAAAVN--GADWLHVDVMDGHFVPNLTIGLPVVESLLAVTDIPMDCHLMIDNPDRWAPPYAEAGAYNVTFHAE--ATDNPVGVARDIRAAGAKAGISVKPGTPLEPYLDILPHFDTLLVMSVEPGFGGQRF 151          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_MYCBO (Ribulose-phosphate 3-epimerase OS=Mycobacterium bovis GN=rpe PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 69/147 (46.94%), Postives = 96/147 (65.31%), Query Frame = 2
Query:  236 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            +++PSIL+A+FA+L ++  AV   G DW+HVDVMDG FVPN+TIG  VV++L  VTD+P+D HLMI  P++  P + +AGA  V+ H E  +T +       I+  GAKAG+ + P T L     +L   D +L+MSV PGFGG  F
Sbjct:    9 LIAPSILAADFARLADEAAAVN--GADWLHVDVMDGHFVPNLTIGLPVVESLLAVTDIPMDCHLMIDNPDRWAPPYAEAGAYNVTFHAE--ATDNPVGVARDIRAAGAKAGISVKPGTPLEPYLDILPHFDTLLVMSVEPGFGGQRF 151          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_CHLMU (Ribulose-phosphate 3-epimerase OS=Chlamydia muridarum GN=rpe PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.583e-30
Identity = 65/151 (43.05%), Postives = 97/151 (64.24%), Query Frame = 2
Query:  224 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            K  ++++PSI+ A+ A LG+  + +E +G + IH+DVMDG FVPNIT GP ++ A+   TDL L+VH MI  P + V  F+KAGAD + VH E +   +L   L+ I+  G +AG+  +P TS+  I   + + D++L+MSV PGF G  F
Sbjct:    3 KQGVLIAPSIMGADLACLGDAARNIEESGANLIHIDVMDGHFVPNITFGPGIIAAINRSTDLFLEVHAMIYTPFEFVEAFVKAGADRIIVHFEAAE--NLKEILDYIRKCGVQAGIAFSPETSIEFISAFIPLCDVILLMSVQPGFCGQKF 151          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_HELPY (Ribulose-phosphate 3-epimerase OS=Helicobacter pylori GN=rpe PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.689e-29
Identity = 67/146 (45.89%), Postives = 97/146 (66.44%), Query Frame = 2
Query:  239 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            V+PS+LSA+F  L +++++V  A  D++HVDVMDG +VPN+T+GP+V++ +  ++ +PLDVHLM+         F      I+S+H E     H HR L  IK+LG   G+VLNP T   +I+ +L+ V LVL+MSVNPGFGG  F
Sbjct:    3 VAPSLLSADFMHLAKEIESVSNA--DFLHVDVMDGHYVPNLTMGPVVLENVTQMSQVPLDVHLMVENASFFAELFAPLKPQIISIHAENEK--HPHRVLQLIKNLGITPGIVLNPHTHEESIKYLLESVGLVLLMSVNPGFGGQKF 144          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_CHLPN (Ribulose-phosphate 3-epimerase OS=Chlamydia pneumoniae GN=rpe PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.206e-29
Identity = 65/151 (43.05%), Postives = 95/151 (62.91%), Query Frame = 2
Query:  224 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            +  ++V PSI+ A+   LG + K +E AG D+IH+D+MDG FVPN+T GP ++ A+   TDL L+VH MI  P + +  F+++GAD + VH E S  I     L+ IK  G +AG+  +P TS+  +   L   D+V++MSV PGF G SF
Sbjct:    4 QESVLVGPSIMGADLTCLGVEAKKLEQAGSDFIHIDIMDGHFVPNLTFGPGIIAAINRSTDLFLEVHAMIYNPFEFIESFVRSGADRIIVHFEASEDI--KELLSYIKKCGVQAGLAFSPDTSIEFLPSFLPFCDVVVLMSVYPGFTGQSF 152          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_HELPJ (Ribulose-phosphate 3-epimerase OS=Helicobacter pylori J99 GN=rpe PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.881e-29
Identity = 66/146 (45.21%), Postives = 96/146 (65.75%), Query Frame = 2
Query:  239 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            V+PS+LSA+F  L +++++V  A  D++HVDVMDG +VPN+T+GP++++ +  ++ +PLDVHLM+      V  F      I+S+H E     H HR L  IK  G   G+VLNP T   +I+ +L+ V LVL+MSVNPGFGG  F
Sbjct:    3 VAPSLLSADFMHLAKEIESVSNA--DFLHVDVMDGHYVPNLTMGPVILENVTQMSQVPLDVHLMVENASFFVELFAPLNPQIISIHAENEK--HPHRVLQLIKSSGITPGIVLNPHTHEESIKYLLESVGLVLLMSVNPGFGGQKF 144          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_BUCBP (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpe PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.419e-29
Identity = 67/150 (44.67%), Postives = 96/150 (64.00%), Query Frame = 2
Query:  236 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP---LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            ++S S+LSANF++LGE +  V  +G D IH DVMD  +V N+T GP+V+++LR V  +    +DVHLM    +  +  F K   +I+S H E  ST ++ +T+  IK  G K G+ LNP T L  ++ VLD +DL+L+MSVNPGF G  F
Sbjct:    5 LLSSSVLSANFSRLGEDIFDVLKSGSDMIHYDVMDNHYVKNLTFGPIVLESLRSVEKIKSMVIDVHLMTCPVDDLIIKFAKLDVNIISFHPE--STNNVEKTIKLIKSYGCKVGLALNPLTPLCVLDNVLDKIDLILLMSVNPGFPGQKF 152          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_MYCLE (Ribulose-phosphate 3-epimerase OS=Mycobacterium leprae GN=rpe PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.439e-28
Identity = 67/147 (45.58%), Postives = 96/147 (65.31%), Query Frame = 2
Query:  236 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            +++PSIL+A+FA+L ++   V  A  DW+HVDVMDG FVPN+TIG  VV +L   +D+P+D HLMI  P++  P + +AGA  V+ H E  +T +     + I+  GAKAG+ + P T L+    +L   D +LIMSV PGFGG +F
Sbjct:    4 LIAPSILAADFARLTDEAAVV--ASADWLHVDVMDGHFVPNLTIGLPVVQSLLAASDIPMDCHLMIDNPDRWAPPYAEAGAYNVTFHAE--ATDNPVGVAHDIRTAGAKAGIGVKPGTPLNPYLDILPHFDTLLIMSVEPGFGGQAF 146          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_METJA (Ribulose-phosphate 3-epimerase OS=Methanocaldococcus jannaschii GN=rpe PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.086e-26
Identity = 66/148 (44.59%), Postives = 94/148 (63.51%), Query Frame = 2
Query:  233 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            I +  SILSA+F  L E++K  E AG D+ HVD+MDG FVPNI++G  +   ++ +T+LP++VHLM+   +  V +F +   D ++ H E  +     R +N+IK +GAK  V LNPAT L AIE +L  V  VL+M+V PGF G  F
Sbjct:    2 IKIGASILSADFGHLREEIKKAEEAGVDFFHVDMMDGHFVPNISMGIGIAKHVKKLTELPVEVHLMVENVDLFVNEFEE--MDYITFHIE--AVKFPFRIINRIKSIGAKPIVALNPATPLDAIEYILGDVYAVLVMTVEPGFSGQKF 145          
The following BLAST results are available for this feature:
BLAST of FC920231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RPE_CHLTR4.445e-3042.68Ribulose-phosphate 3-epimerase OS=Chlamydia tracho... [more]
RPE_MYCTU7.583e-3046.94Ribulose-phosphate 3-epimerase OS=Mycobacterium tu... [more]
RPE_MYCBO7.583e-3046.94Ribulose-phosphate 3-epimerase OS=Mycobacterium bo... [more]
RPE_CHLMU7.583e-3043.05Ribulose-phosphate 3-epimerase OS=Chlamydia murida... [more]
RPE_HELPY1.689e-2945.89Ribulose-phosphate 3-epimerase OS=Helicobacter pyl... [more]
RPE_CHLPN2.206e-2943.05Ribulose-phosphate 3-epimerase OS=Chlamydia pneumo... [more]
RPE_HELPJ2.881e-2945.21Ribulose-phosphate 3-epimerase OS=Helicobacter pyl... [more]
RPE_BUCBP6.419e-2944.67Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE_MYCLE2.439e-2845.58Ribulose-phosphate 3-epimerase OS=Mycobacterium le... [more]
RPE_METJA5.086e-2644.59Ribulose-phosphate 3-epimerase OS=Methanocaldococc... [more]

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Properties
Property NameValue
Genbank descriptionC32005F06EF RVDevelop1 Citrus clementina cDNA clone C32005F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920231 ID=FC920231; Name=FC920231; organism=Citrus clementina; type=EST; length=677bp
GACTAGCCATAACCAAACCAACAGCTACGTTTTAGAGAGAGAAACAAAAA
AGAGCGTCAAGATGTCTACAGGCTCGCTGTGTTCATCAACGACTCAGATC
AATGGCTTTACAGGTGGTTTCATGTTGCAGAAAACCAATCTTAATCAGCC
CAGTTCACTTAGTTTTACAAGGAGGAGAATTCATACTATAGTGAAGGCAT
CAGCTCGTGTGGATAAGTTCTCGAAAAGTGATATTATTGTTTCTCCATCT
ATTCTCTCTGCTAATTTTGCGAAGTTAGGCGAGCAGGTAAAAGCAGTGGA
ATTGGCTGGTTGTGATTGGATTCATGTTGATGTCATGGATGGTCGTTTTG
TTCCAAACATTACAATTGGACCTCTTGTGGTTGATGCCTTGCGCCCTGTG
ACAGACCTTCCTTTGGATGTTCATTTGATGATTGTCGAACCTGAACAACG
AGTGCCTGATTTTATCAAGGCTGGAGCAGACATAGTCAGCGTCCACTGTG
AGCAATCATCCACCATTCATTTGCACCGCACTCTTAACCAAATAAAAGAT
TTGGGAGCTAAAGCTGGAGTTGTCCTTAACCCTGCTACCTCACTGAGTGC
AATAGAATGTGTCCTTGATGTGGTTGATCTTGTCTTGATCATGTCGGTGA
ACCCTGGCTTTGGTGGGGCAAGCTTTA
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