FC920231

Overview
NameFC920231
Unique NameFC920231
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_YEAST (Ribulose-phosphate 3-epimerase OS=Saccharomyces cerevisiae GN=RPE1 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.933e-25
Identity = 65/161 (40.37%), Postives = 91/161 (56.52%), Query Frame = 2
Query:  236 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP-------------LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            I++PSIL+++FA LG +   V  AG DW+H+DVMDG FVPNIT+G  +V +LR     P              D H+M+  PE+ V DF K GAD  + H E +   +HL   +  IK  G KA   + P TS+  +  +   +D+ L+M+V PGFGG  F
Sbjct:    5 IIAPSILASDFANLGCECHKVINAGADWLHIDVMDGHFVPNITLGQPIVTSLRRSVPRPGDASNTEKKPTAFFDCHMMVENPEKWVDDFAKCGADQFTFHYEATQDPLHL---VKLIKSKGIKAACAIKPGTSVDVLFELAPHLDMALVMTVEPGFGGQKF 162          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE1_ORYSJ (Ribulose-phosphate 3-epimerase, cytoplasmic isoform OS=Oryza sativa subsp. japonica GN=Os09g0505700 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.636e-24
Identity = 60/149 (40.27%), Postives = 86/149 (57.72%), Query Frame = 2
Query:  239 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV---VDLVLIMSVNPGFGGASF 676
            ++PS+LS++FA L  +   +   G DW+H+D+MDG FVPN+TIG  V+ +LR  T   LD HLM+  P   V    KAGA   + H E S   +    +  IK  G + GV L P T +  +  +++    V+LVL+M+V PGFGG  F
Sbjct:    9 IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRD-NWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKF 156          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_SCHPO (Ribulose-phosphate 3-epimerase OS=Schizosaccharomyces pombe GN=SPAC31G5.05c PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.061e-23
Identity = 58/149 (38.93%), Postives = 89/149 (59.73%), Query Frame = 2
Query:  239 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALR---PVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            ++PS+L+ +FA L ++V  +   G DW+HVDVMD +FVPN+TIGP+VV A+R      +   D HLM++EPE+ +     AGA +   H E  +T      +++  + G   G  L P T +  I   ++ +D+VL+M+V PG GG SF
Sbjct:    6 IAPSLLAGDFANLEKEVGRMLKYGSDWLHVDVMDAQFVPNLTIGPIVVKAMRNHYTKEEAFFDCHLMVIEPERYIDQLADAGASLFCFHYE--ATEKHEEIISRAHEKGMLVGCALKPKTPVEVILPFVEKLDMVLVMTVEPGKGGQSF 152          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_CANGA (Ribulose-phosphate 3-epimerase OS=Candida glabrata GN=RPE1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.061e-23
Identity = 62/163 (38.04%), Postives = 90/163 (55.21%), Query Frame = 2
Query:  236 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP----------------LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            I++PSIL+++FA LG +   V  +G +W+H+DVMDG FVPNIT+G  +V +LR                       D H+M+ EPE+ V DF KAGAD  + H E  +T      +  IK+ G KA   + P T +  +  +   +D+ L+M+V PGFGG  F
Sbjct:    5 IIAPSILASDFANLGCECHRVINSGAEWLHIDVMDGHFVPNITLGQPIVTSLRRAVPRSQEEEKASGEVARPTAFFDCHMMVEEPEKWVADFAKAGADQFTFHYE--ATKDPLSLVKLIKENGIKAACAIKPGTPVDVLFELAPYLDMALVMTVEPGFGGQKF 165          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: ALSE_ECOLI (D-allulose-6-phosphate 3-epimerase OS=Escherichia coli (strain K12) GN=alsE PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.363e-23
Identity = 49/146 (33.56%), Postives = 88/146 (60.27%), Query Frame = 2
Query:  239 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            +SPS++  +  K  EQ++ ++ +  D+ H+D+MDG FVPN+T+ P  V  ++ +   PLD HLM+  P+  +    +AGAD +++H E  +     R +++I+    K G++LNP T + A++  +   D + +M+V+PGF G  F
Sbjct:    3 ISPSLMCMDLLKFKEQIEFID-SHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPETING-QAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAGQPF 146          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_ASHGO (Ribulose-phosphate 3-epimerase OS=Ashbya gossypii GN=RPE1 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23
Identity = 61/158 (38.61%), Postives = 91/158 (57.59%), Query Frame = 2
Query:  236 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--------TDLP---LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            I++PSIL+++FA L      V  AG +W+H+DVMDG FVPNIT+GP +V +LR          +D P    D H+M+ EPE+ V  F++ GAD  + H E  +T +    +  IK  G +A   + P T +  +  +   +D+ L+M+V PGFGG  F
Sbjct:    5 IIAPSILASDFANLECGCHRVINAGAEWLHIDVMDGHFVPNITLGPPIVKSLRKAVPRVGDKESDKPKAFFDCHMMVAEPEKWVDVFVENGADQFTFHYE--ATKNPLELVKLIKSRGIRAACAIKPDTPVDVLFELAPYLDMALVMTVEPGFGGQKF 160          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_PONAB (Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=RPE PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.456e-22
Identity = 57/148 (38.51%), Postives = 89/148 (60.14%), Query Frame = 2
Query:  239 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            + PSIL+++ A LG +   +  +G D++H+DVMDG FVPNIT G  VV++LR     D   D+H+M+ +PEQ V     AGA+  + H E  +T +    +  I++ G K G+ + P TS+  +    + +D+ L+M+V PGFGG  F
Sbjct:    7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYAFHLE--ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKF 152          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_HUMAN (Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=RPE PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.456e-22
Identity = 57/148 (38.51%), Postives = 89/148 (60.14%), Query Frame = 2
Query:  239 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            + PSIL+++ A LG +   +  +G D++H+DVMDG FVPNIT G  VV++LR     D   D+H+M+ +PEQ V     AGA+  + H E  +T +    +  I++ G K G+ + P TS+  +    + +D+ L+M+V PGFGG  F
Sbjct:    7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLE--ATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKF 152          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_MOUSE (Ribulose-phosphate 3-epimerase OS=Mus musculus GN=Rpe PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.296e-21
Identity = 56/148 (37.84%), Postives = 88/148 (59.46%), Query Frame = 2
Query:  239 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            + PSIL+++ A LG +   +  +G D++H+DVMDG FVPNIT G  VV++LR     D   D+H+M+  PEQ V     AGA+  + H E  +T +    +  I++ G K G+ + P T++  +    + +D+ L+M+V PGFGG  F
Sbjct:    7 IGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSRPEQWVKPMAVAGANQYTFHLE--ATENPGALIKDIRENGMKVGLAIKPGTTVEYLAPWANQIDMALVMTVEPGFGGQKF 152          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: RPE_ENCCU (Ribulose-phosphate 3-epimerase OS=Encephalitozoon cuniculi GN=RPE1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.999e-15
Identity = 51/146 (34.93%), Postives = 73/146 (50.00%), Query Frame = 2
Query:  248 SILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH---CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            SIL  NF  L E++  ++  G   IH+DVMD  FV NIT GP +++ +    D   DVH+M+  P   +         +V++H   C+++      R  N +       G+ LNP T +   E  +   D VLIMSV PGFGG  F
Sbjct:   13 SILDCNFGNLEEELGELKRNGVTNIHLDVMDTTFVKNITFGPCIINRILE-HDFVFDVHMMVESPLDIIMQIDLERVSLVTIHSEVCDKAGVAEYLRKRNVL------FGIALNPETQVDDAE--MRSADFVLIMSVKPGFGGQKF 149          
The following BLAST results are available for this feature:
BLAST of FC920231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
RPE_YEAST1.933e-2540.37Ribulose-phosphate 3-epimerase OS=Saccharomyces ce... [more]
RPE1_ORYSJ1.636e-2440.27Ribulose-phosphate 3-epimerase, cytoplasmic isofor... [more]
RPE_SCHPO1.061e-2338.93Ribulose-phosphate 3-epimerase OS=Schizosaccharomy... [more]
RPE_CANGA1.061e-2338.04Ribulose-phosphate 3-epimerase OS=Candida glabrata... [more]
ALSE_ECOLI2.363e-2333.56D-allulose-6-phosphate 3-epimerase OS=Escherichia ... [more]
RPE_ASHGO5.263e-2338.61Ribulose-phosphate 3-epimerase OS=Ashbya gossypii ... [more]
RPE_PONAB4.456e-2238.51Ribulose-phosphate 3-epimerase OS=Pongo abelii GN=... [more]
RPE_HUMAN4.456e-2238.51Ribulose-phosphate 3-epimerase OS=Homo sapiens GN=... [more]
RPE_MOUSE1.296e-2137.84Ribulose-phosphate 3-epimerase OS=Mus musculus GN=... [more]
RPE_ENCCU8.999e-1534.93Ribulose-phosphate 3-epimerase OS=Encephalitozoon ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32005F06EF RVDevelop1 Citrus clementina cDNA clone C32005F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920231 ID=FC920231; Name=FC920231; organism=Citrus clementina; type=EST; length=677bp
GACTAGCCATAACCAAACCAACAGCTACGTTTTAGAGAGAGAAACAAAAA
AGAGCGTCAAGATGTCTACAGGCTCGCTGTGTTCATCAACGACTCAGATC
AATGGCTTTACAGGTGGTTTCATGTTGCAGAAAACCAATCTTAATCAGCC
CAGTTCACTTAGTTTTACAAGGAGGAGAATTCATACTATAGTGAAGGCAT
CAGCTCGTGTGGATAAGTTCTCGAAAAGTGATATTATTGTTTCTCCATCT
ATTCTCTCTGCTAATTTTGCGAAGTTAGGCGAGCAGGTAAAAGCAGTGGA
ATTGGCTGGTTGTGATTGGATTCATGTTGATGTCATGGATGGTCGTTTTG
TTCCAAACATTACAATTGGACCTCTTGTGGTTGATGCCTTGCGCCCTGTG
ACAGACCTTCCTTTGGATGTTCATTTGATGATTGTCGAACCTGAACAACG
AGTGCCTGATTTTATCAAGGCTGGAGCAGACATAGTCAGCGTCCACTGTG
AGCAATCATCCACCATTCATTTGCACCGCACTCTTAACCAAATAAAAGAT
TTGGGAGCTAAAGCTGGAGTTGTCCTTAACCCTGCTACCTCACTGAGTGC
AATAGAATGTGTCCTTGATGTGGTTGATCTTGTCTTGATCATGTCGGTGA
ACCCTGGCTTTGGTGGGGCAAGCTTTA
back to top