FC920231

Overview
NameFC920231
Unique NameFC920231
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9463 contig Ccv1_Contig9463:62..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: LSRE_SALPA (Putative epimerase lsrE OS=Salmonella paratyphi A GN=lsrE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.420e-14
Identity = 49/151 (32.45%), Postives = 81/151 (53.64%), Query Frame = 2
Query:  239 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQI---------KDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 664
            +S  IL+  +  L   ++ +E      +H+D+MDG+F P  T+GP  V+ L P T +  DVHLM+ +        +KAGA  +++  E    IHLH TL+ +          ++    G+ L PAT L  I  +L  V+++ +++VNPG+G
Sbjct:   22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVEQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYG 168          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: LSRE_SALTY (Putative epimerase lsrE OS=Salmonella typhimurium GN=lsrE PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 49/151 (32.45%), Postives = 80/151 (52.98%), Query Frame = 2
Query:  239 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQI---------KDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 664
            +S  IL+  +  L   ++ +E      +H+D+MDG+F P  T+GP  V  L P T +  DVHLM+ +        +KAGA  +++  E    IHLH TL+ +          ++    G+ L PAT L  I  +L  V+++ +++VNPG+G
Sbjct:   22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYG 168          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: LSRE_SALTI (Putative epimerase lsrE OS=Salmonella typhi GN=lsrE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 49/151 (32.45%), Postives = 80/151 (52.98%), Query Frame = 2
Query:  239 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQI---------KDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 664
            +S  IL+  +  L   ++ +E      +H+D+MDG+F P  T+GP  V  L P T +  DVHLM+ +        +KAGA  +++  E    IHLH TL+ +          ++    G+ L PAT L  I  +L  V+++ +++VNPG+G
Sbjct:   22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWAAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIDGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYG 168          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: LSRE_SALPB (Putative epimerase lsrE OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=lsrE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 49/151 (32.45%), Postives = 80/151 (52.98%), Query Frame = 2
Query:  239 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQI---------KDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 664
            +S  IL+  +  L   ++ +E      +H+D+MDG+F P  T+GP  V  L P T +  DVHLM+ +        +KAGA  +++  E    IHLH TL+ +          ++    G+ L PAT L  I  +L  V+++ +++VNPG+G
Sbjct:   22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYG 168          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: LSRE_SALCH (Putative epimerase lsrE OS=Salmonella choleraesuis GN=lsrE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.618e-14
Identity = 49/151 (32.45%), Postives = 80/151 (52.98%), Query Frame = 2
Query:  239 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQI---------KDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 664
            +S  IL+  +  L   ++ +E      +H+D+MDG+F P  T+GP  V  L P T +  DVHLM+ +        +KAGA  +++  E    IHLH TL+ +          ++    G+ L PAT L  I  +L  V+++ +++VNPG+G
Sbjct:   22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-DVHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYG 168          
BLAST of FC920231 vs. ExPASy Swiss-Prot
Match: SGCE_ECOLI (Protein sgcE OS=Escherichia coli (strain K12) GN=sgcE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.299e-13
Identity = 46/148 (31.08%), Postives = 75/148 (50.68%), Query Frame = 2
Query:  233 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGASF 676
            +I+ PS+ SAN    G ++ A++      +H+D+ D  F+ NIT G   V A+   T  PL  H M+  P++      +     + VH E  +  +   TL +I+  GA+AG+V NPAT + A   +   +D V++M+  P   G  F
Sbjct:    1 MILHPSLASANPLHYGRELTALDNLDFGSLHLDIEDSSFINNITFGMKTVQAVARQTPHPLSFHFMLARPQRWFNALAEIRPAWIFVHAE--TLDYPSETLTEIRHTGARAGLVFNPATPIDAWRYLASELDGVMVMTSEPDGQGQRF 146          
The following BLAST results are available for this feature:
BLAST of FC920231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
LSRE_SALPA3.420e-1432.45Putative epimerase lsrE OS=Salmonella paratyphi A ... [more]
LSRE_SALTY7.618e-1432.45Putative epimerase lsrE OS=Salmonella typhimurium ... [more]
LSRE_SALTI7.618e-1432.45Putative epimerase lsrE OS=Salmonella typhi GN=lsr... [more]
LSRE_SALPB7.618e-1432.45Putative epimerase lsrE OS=Salmonella paratyphi B ... [more]
LSRE_SALCH7.618e-1432.45Putative epimerase lsrE OS=Salmonella choleraesuis... [more]
SGCE_ECOLI1.299e-1331.08Protein sgcE OS=Escherichia coli (strain K12) GN=s... [more]

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Properties
Property NameValue
Genbank descriptionC32005F06EF RVDevelop1 Citrus clementina cDNA clone C32005F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920231 ID=FC920231; Name=FC920231; organism=Citrus clementina; type=EST; length=677bp
GACTAGCCATAACCAAACCAACAGCTACGTTTTAGAGAGAGAAACAAAAA
AGAGCGTCAAGATGTCTACAGGCTCGCTGTGTTCATCAACGACTCAGATC
AATGGCTTTACAGGTGGTTTCATGTTGCAGAAAACCAATCTTAATCAGCC
CAGTTCACTTAGTTTTACAAGGAGGAGAATTCATACTATAGTGAAGGCAT
CAGCTCGTGTGGATAAGTTCTCGAAAAGTGATATTATTGTTTCTCCATCT
ATTCTCTCTGCTAATTTTGCGAAGTTAGGCGAGCAGGTAAAAGCAGTGGA
ATTGGCTGGTTGTGATTGGATTCATGTTGATGTCATGGATGGTCGTTTTG
TTCCAAACATTACAATTGGACCTCTTGTGGTTGATGCCTTGCGCCCTGTG
ACAGACCTTCCTTTGGATGTTCATTTGATGATTGTCGAACCTGAACAACG
AGTGCCTGATTTTATCAAGGCTGGAGCAGACATAGTCAGCGTCCACTGTG
AGCAATCATCCACCATTCATTTGCACCGCACTCTTAACCAAATAAAAGAT
TTGGGAGCTAAAGCTGGAGTTGTCCTTAACCCTGCTACCTCACTGAGTGC
AATAGAATGTGTCCTTGATGTGGTTGATCTTGTCTTGATCATGTCGGTGA
ACCCTGGCTTTGGTGGGGCAAGCTTTA
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