FC920233

Overview
NameFC920233
Unique NameFC920233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14102 contig Ccv1_Contig14102:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 291.967 bits (746), Expect = 1.950e-78
Identity = 144/195 (73.85%), Postives = 165/195 (84.62%), Query Frame = 1
Query:   88 EDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672
            EDE KD+K  R LDE DIALLKTYG   YS  IK+ E +I+ + KK+N+L GIKESDTGLA P+ WDL +DKQ +Q EQPLQVARCTKII+ +SED KY+INVKQ AKFVV L D+V+PTDIEEGMRVGVDRNKYQI IPLPPKIDP+VTMM VEEKPDVTY+DVGGCKEQIEK+REVVE P+LHPE+ V LGI+
Sbjct:   14 EDE-KDDKPIRALDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIE 207          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS7_XENLA (26S protease regulatory subunit 7 OS=Xenopus laevis GN=psmc2 PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 4.345e-78
Identity = 141/195 (72.31%), Postives = 165/195 (84.62%), Query Frame = 1
Query:   88 EDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672
            ++E K++K  R LDE DIALLKTYG   YS  IK+ E +I+ + KK+N+L GIKESDTGLA P+ WDL +DKQ +Q EQPLQVARCTKII+ +SED KY+INVKQ AKFVV L D+V+PTDIEEGMRVGVDRNKYQI IPLPPKIDP+VTMM VEEKPDVTY+DVGGCKEQIEK+REVVE P+LHPE+ V LGI+
Sbjct:   13 KEEEKEDKPIRSLDEGDIALLKTYGQSTYSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHPERFVNLGIE 207          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 2.231e-74
Identity = 132/195 (67.69%), Postives = 162/195 (83.08%), Query Frame = 1
Query:   88 EDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672
            +D  ++EKN + LDE DIA+LK YG GPY+  +K  + +I++  KKVN+L G+KESDTGLA P+ WD+ +DKQ MQ+EQPLQVARCTKII+ +  D +Y+INVKQ AKFVV L D V+PTDIEEGMRVGVDRNKYQI +PLP KIDP+VTMM VEEKPDVTY+DVGGCK+QIEK+REVVE P+LHPE+ V LGI+
Sbjct:   15 DDTKEEEKNFQALDEGDIAVLKRYGQGPYAEQLKTLDADIENCLKKVNELSGVKESDTGLAPPALWDIAADKQAMQQEQPLQVARCTKIITSDKHDPRYLINVKQFAKFVVDLADSVAPTDIEEGMRVGVDRNKYQIHLPLPAKIDPTVTMMQVEEKPDVTYSDVGGCKDQIEKLREVVETPLLHPERYVNLGIE 209          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 278.485 bits (711), Expect = 2.231e-74
Identity = 135/168 (80.36%), Postives = 153/168 (91.07%), Query Frame = 1
Query:  169 PYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672
            PYS  IKK EKEI ++A+K+ +L GIKESDTGLA P+QWDLVSDKQMMQEEQPL VA CT+IISPN+EDAKYV+++K+I K+VVGLGDK SPTDIE GMRVGVD+ KYQIQIPLPPKIDPSVTMMTVEEKPD TY+D+GGCKEQIEK+REVVELPMLHPEK V+LGID
Sbjct:   71 PYSARIKKVEKEINELAEKICNL-GIKESDTGLAPPNQWDLVSDKQMMQEEQPLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGID 237          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS7_SCHPO (26S protease regulatory subunit 7 homolog OS=Schizosaccharomyces pombe GN=rpt1 PE=1 SV=2)

HSP 1 Score: 270.781 bits (691), Expect = 4.653e-72
Identity = 137/208 (65.87%), Postives = 164/208 (78.85%), Query Frame = 1
Query:   58 KESKAMAPEPED-EIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIIS--PNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672
            KE      +P D E +++KNP PLDE DI LLK+Y  GPY+  +   +++ + + K++ND  GIKESDTGLA  S WD+ +D+Q M EEQPLQVARCTKII    ++E   YVIN+KQIAKFVV LG++VSPTDIEEGMRVG DRNKY IQ+PLPPKIDPSVTMM VEEKPDVTY DVGGCKEQIE++REVVELP+L PE+ VKLGID
Sbjct:    4 KEDWEKYQKPVDTEEENDKNPPPLDEGDIELLKSYATGPYARELAAIKEDTEAVLKRINDTVGIKESDTGLAPISFWDVAADRQRMSEEQPLQVARCTKIIENEQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGID 211          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.830e-68
Identity = 132/233 (56.65%), Postives = 163/233 (69.96%), Query Frame = 1
Query:   67 KAMAP-EPEDEIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPN------------------------------SEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672
            K  AP E +D+  D+    PL E DI +LK+YG  PY+  +K+ E ++KD+  ++ +  G+KESDTGLA    WD++ D+Q + EE PLQVARCTKII  N                               EDAKYVIN+KQIAKFVVGLG++VSPTDIEEGMRVGVDR+KY I++PLPP+IDPSVTMMTVEEKPDVTY+DVGGCK+QIEK+REVVELP+L PE+   LGID
Sbjct:    9 KYKAPLEDDDKKPDDDKIVPLTEGDIQVLKSYGAAPYAAKLKQTENDLKDIEARIKEKAGVKESDTGLAPSHLWDIMGDRQRLGEEHPLQVARCTKIIKGNGESDETTTDNNNSGNSNSNSNQQSTDADEDDEDAKYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGID 241          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: FB58_ARATH (F-box protein At1g53790 OS=Arabidopsis thaliana GN=At1g53790 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.088e-20
Identity = 52/72 (72.22%), Postives = 57/72 (79.17%), Query Frame = 1
Query:  121 PLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQV 336
            PLDEDDIAL+KTYGL PYS  IKK EKEIK++ +K+NDLCGIKESDTGLA  S       KQMMQE QPLQV
Sbjct:    9 PLDEDDIALVKTYGLVPYSAPIKKVEKEIKELTEKINDLCGIKESDTGLAPLS-------KQMMQEGQPLQV 73          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.625e-16
Identity = 56/174 (32.18%), Postives = 87/174 (50.00%), Query Frame = 1
Query:  148 LKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            LK Y    Y   I++ E  ++D  + +  L   +    G        L  + Q +QE     V    K++       K +I + Q  K++V +   +   D+  G+RV +  + Y +   LP KIDP V++M VE+ PD TY  VGG  EQI++++EV+ELP+ HPE    LGI
Sbjct:   27 LKNY----YIAKIQEKEIVLRDKIENLRRLQAQRNELNGRVR----SLKEELQQLQEPGS-HVGEVVKVMGKK----KVLIKISQEGKYIVDIDKSIELKDLTPGVRVALRNDSYALHKILPNKIDPLVSLMKVEKVPDATYEMVGGLDEQIKEIKEVIELPIKHPELFESLGI 187          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.054e-15
Identity = 54/166 (32.53%), Postives = 90/166 (54.22%), Query Frame = 1
Query:  172 YSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            Y+  I+ AE  I    +K  +L  ++    GL A  +  L+ ++  + +E    V    K +  N    K ++ V    K+VV +   +   +I+  +RV +  + YQ+   LP K+DP V++M VE+ PD TY  VGG ++QI++++EV+ELP+ HPE    LGI
Sbjct:   20 YTQKIQDAELAI---LQKTQNLRRLEAQRNGLNARVR--LLREEIQLLQEPGSYVGEVIKTMGKN----KVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGI 176          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.376e-15
Identity = 47/154 (30.52%), Postives = 83/154 (53.90%), Query Frame = 1
Query:  208 KDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            + + +K N+L  ++     L   S+  ++ ++  + +E    V    K++  N    K ++ V    K+VV +   +  T I    RV +  + Y + + LP K+DP V +M VE+ PD TY+ +GG  +QI++++EV+ELP+ HPE    LGI
Sbjct:   45 RQLRQKTNNLNRLEAQRNELN--SRVRMLREELQLLQEPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGI 192          
The following BLAST results are available for this feature:
BLAST of FC920233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
PRS7_BOVIN1.950e-7873.8526S protease regulatory subunit 7 OS=Bos taurus GN... [more]
PRS7_XENLA4.345e-7872.3126S protease regulatory subunit 7 OS=Xenopus laevi... [more]
PRS7_CAEEL2.231e-7467.6926S protease regulatory subunit 7 OS=Caenorhabditi... [more]
PRS7B_ARATH2.231e-7480.3626S protease regulatory subunit 7 homolog B OS=Ara... [more]
PRS7_SCHPO4.653e-7265.8726S protease regulatory subunit 7 homolog OS=Schiz... [more]
PRS7_YEAST1.830e-6856.6526S protease regulatory subunit 7 homolog OS=Sacch... [more]
FB58_ARATH1.088e-2072.22F-box protein At1g53790 OS=Arabidopsis thaliana GN... [more]
PRS8_NAEFO1.625e-1632.1826S protease regulatory subunit 8 homolog OS=Naegl... [more]
PRS8_SCHPO1.054e-1532.5326S protease regulatory subunit 8 homolog OS=Schiz... [more]
PRS8A_ARATH1.376e-1530.5226S protease regulatory subunit 8 homolog A OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC32005F09EF RVDevelop1 Citrus clementina cDNA clone C32005F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920233 ID=FC920233; Name=FC920233; organism=Citrus clementina; type=EST; length=673bp
GTTTGCACTTTTATTTCTCCGCTCGCAATCTTAAATCTTCAGTCTTCCAA
GCTAGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAGATCA
AGGACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCTTCTC
AAAACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGGAGAA
AGAAATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATCAAGG
AGTCTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTCGGAT
AAGCAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCACCAA
GATAATCAGTCCAAACTCTGAAGATGCCAAATATGTTATAAATGTTAAGC
AGATTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAACGGAT
ATAGAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGATTCA
AATTCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACCGTGG
AAGAGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGAGCAG
ATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGAA
ANTTGTAAAGCTTGGAATTGATC
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