FC920233

Overview
NameFC920233
Unique NameFC920233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14102 contig Ccv1_Contig14102:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS8_MANSE (26S protease regulatory subunit 8 OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.797e-15
Identity = 60/182 (32.97%), Postives = 94/182 (51.65%), Query Frame = 1
Query:  124 LDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            L + ++   K  G  PY   I K E+    +A+K  +L  ++     L A  +  L  + Q++QE    Q +   +++ P  +  K ++ V    KFVV L   V   D+    RV +    Y +   LP K+DP V++M VE+ PD TY  VGG  +QI++++EV+ELP+ HPE    LGI
Sbjct:    3 LTKMEVDSTKGEGFRPYY--ITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRM-LREELQLLQE----QGSYVGEVVKP-MDKKKVLVKVHPEGKFVVDLDKNVDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGI 176          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 82.4185 bits (202), Expect = 2.347e-15
Identity = 52/171 (30.41%), Postives = 89/171 (52.05%), Query Frame = 1
Query:  160 GLGPY-STSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            G+ PY    I++ E +I+   + V  L   +      A   +   + D+  + +E    V    KI+S    D K ++ V+   K++V +   ++  D++   RV +  + Y +   L  K DP V++M VE+ PD TY+ VGG  +QI++++EV+ELP+ HPE    LGI
Sbjct:   18 GIKPYFEQKIQETELKIRSKTENVRRLEAQRN-----ALNDKVRFIKDELRLLQEPGSYVGEVIKIVS----DKKVLVKVQPEGKYIVDVAKDINVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI 179          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS8_DROME (26S protease regulatory subunit 8 OS=Drosophila melanogaster GN=Pros45 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.065e-15
Identity = 57/170 (33.53%), Postives = 90/170 (52.94%), Query Frame = 1
Query:  160 GLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            G G  S  I+K E+    +A+K  +L  ++     L A  +  L  + Q++QE    Q +   +++ P  +  K ++ V    KFVV L   +   D+    RV +    Y +   LP K+DP V++M VE+ PD TY  VGG  +QI++++EV+ELP+ HPE    LGI
Sbjct:   16 GEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRM-LREELQLLQE----QGSYVGEVVKP-MDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGI 179          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.065e-15
Identity = 46/134 (34.33%), Postives = 74/134 (55.22%), Query Frame = 1
Query:  286 DLVSDKQMMQEEQPL------QVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            +L S  +M++EE  L       V    K++  N    K ++ V    K+VV +   +  T +    RV +  + Y + + LP K+DP V +M VE+ PD TY+ +GG  +QI++++EV+ELP+ HPE    LGI
Sbjct:   63 ELNSRVRMLREELQLLQEPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGI 192          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_METTH (Proteasome-activating nucleotidase OS=Methanobacterium thermoautotrophicum GN=pan PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.228e-15
Identity = 54/181 (29.83%), Postives = 89/181 (49.17%), Query Frame = 1
Query:  199 KEIKDMAKKVNDLCGIKESDTGLAAPSQWD---LVSDKQMMQEEQ--------------------PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672
            K+I+D+ K+V  L   KE ++       W    L  DK +++ E+                    PL +A  T+++    +D +  +       FV+     +    +E G RV +++  + I   LP + DP VT M VEEKPDV+Y  +GG +EQ+ +++E VELP+  PE   K+GI+
Sbjct:   10 KKIEDLKKEVRML---KEENSKTKRNLMWKIRKLEKDKLLIENERTRLDREVKSLRGEIERFRTPPLVIATVTEVL----DDHRVAVKSTTGPHFVINYSRFIDRKQLEPGARVALNQQTFSIVDVLPSEKDPVVTGMEVEEKPDVSYEQIGGLEEQVREVKETVELPLKKPELFEKIGIE 183          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.228e-15
Identity = 54/162 (33.33%), Postives = 84/162 (51.85%), Query Frame = 1
Query:  202 EIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPL------QVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            +I+++  KVN+    K  D       + +L +  +M++EE  L       VA   K++  N    K ++ V    KFVV +   V    +    R  +    Y +   LP KIDP V++M VE+ PD TY+ VGG  +QI++++EV+ELP+ HPE    LGI
Sbjct:   23 KIEELEIKVNE----KAQDLRRLEAQRNELNNRVRMLKEELQLLTNPGSHVAEVVKLMGKN----KVLVKVNPEGKFVVDIDPTVDIAKLTPSTRAALKHESYTLHRILPNKIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIKEVIELPIKHPELFESLGI 176          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.165e-14
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 1
Query:  352 IISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672
            ++S   ED + V+      KFVV     ++  +++ G RV +++    I   LP   DP V    VEEKP+V+Y D+GG   QIE++RE VELP+L PE   ++GI+
Sbjct:   67 VVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKPEVSYEDIGGLDVQIEEIREAVELPLLKPELFAEVGIE 173          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.521e-14
Identity = 49/163 (30.06%), Postives = 89/163 (54.60%), Query Frame = 1
Query:  181 SIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            S ++   E +D+ +K+ DL   +   T     S+ D+ S + + Q      V    K +S    + K+++      ++VVG    ++  ++++G RV +D     I   LP ++DP V  M+ E+  +++Y+DVGG  EQI ++REVVELP+++PE   ++GI
Sbjct:   28 SYRRKLAECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQI-----VGEVLKQLS----EEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGI 181          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.987e-14
Identity = 42/127 (33.07%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  289 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            L+ ++  + +EQ   V    + +    +  K ++ V    KFVV +   +   D+    RV +  + Y +   LP K+DP V++M VE+ PD TY  +GG  +QI++++EV+ELP+ HPE    LGI
Sbjct:   53 LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPEHFEALGI 175          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 42/127 (33.07%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  289 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            L+ ++  + +EQ   V    + +    +  K ++ V    KFVV +   +   D+    RV +  + Y +   LP K+DP V++M VE+ PD TY  +GG  +QI++++EV+ELP+ HPE    LGI
Sbjct:   58 LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180          
The following BLAST results are available for this feature:
BLAST of FC920233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
PRS8_MANSE1.797e-1532.9726S protease regulatory subunit 8 OS=Manduca sexta... [more]
PRS8_YEAST2.347e-1530.4126S protease regulatory subunit 8 homolog OS=Sacch... [more]
PRS8_DROME3.065e-1533.5326S protease regulatory subunit 8 OS=Drosophila me... [more]
PRS8B_ARATH3.065e-1534.3326S protease regulatory subunit 8 homolog B OS=Ara... [more]
PSMR_METTH5.228e-1529.83Proteasome-activating nucleotidase OS=Methanobacte... [more]
PRS8_DICDI5.228e-1533.3326S protease regulatory subunit 8 OS=Dictyostelium... [more]
PSMR_ARCFU1.165e-1438.32Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PRS10_CAEEL1.521e-1430.06Probable 26S protease regulatory subunit S10B OS=C... [more]
PRS8_XENLA1.987e-1433.0726S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PRS8_RAT2.595e-1433.0726S protease regulatory subunit 8 OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionC32005F09EF RVDevelop1 Citrus clementina cDNA clone C32005F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920233 ID=FC920233; Name=FC920233; organism=Citrus clementina; type=EST; length=673bp
GTTTGCACTTTTATTTCTCCGCTCGCAATCTTAAATCTTCAGTCTTCCAA
GCTAGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAGATCA
AGGACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCTTCTC
AAAACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGGAGAA
AGAAATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATCAAGG
AGTCTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTCGGAT
AAGCAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCACCAA
GATAATCAGTCCAAACTCTGAAGATGCCAAATATGTTATAAATGTTAAGC
AGATTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAACGGAT
ATAGAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGATTCA
AATTCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACCGTGG
AAGAGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGAGCAG
ATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGAA
ANTTGTAAAGCTTGGAATTGATC
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