FC920233
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS8_PIG (26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14 Identity = 42/127 (33.07%), Postives = 70/127 (55.12%), Query Frame = 1 Query: 289 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669 L+ ++ + +EQ V + + + K ++ V KFVV + + D+ RV + + Y + LP K+DP V++M VE+ PD TY +GG +QI++++EV+ELP+ HPE LGI Sbjct: 58 LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14 Identity = 42/127 (33.07%), Postives = 70/127 (55.12%), Query Frame = 1 Query: 289 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669 L+ ++ + +EQ V + + + K ++ V KFVV + + D+ RV + + Y + LP K+DP V++M VE+ PD TY +GG +QI++++EV+ELP+ HPE LGI Sbjct: 58 LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14 Identity = 42/127 (33.07%), Postives = 70/127 (55.12%), Query Frame = 1 Query: 289 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669 L+ ++ + +EQ V + + + K ++ V KFVV + + D+ RV + + Y + LP K+DP V++M VE+ PD TY +GG +QI++++EV+ELP+ HPE LGI Sbjct: 58 LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14 Identity = 42/127 (33.07%), Postives = 70/127 (55.12%), Query Frame = 1 Query: 289 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669 L+ ++ + +EQ V + + + K ++ V KFVV + + D+ RV + + Y + LP K+DP V++M VE+ PD TY +GG +QI++++EV+ELP+ HPE LGI Sbjct: 58 LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.389e-14 Identity = 42/137 (30.66%), Postives = 75/137 (54.74%), Query Frame = 1 Query: 289 LVSDKQMMQEEQPLQVARCTKIISPNS---------EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672 L +DK+ ++ E + +++ P + +D + ++ +FVV + + + + G RV +D+ I LP DP+V V E+P+VTYND+GG K+Q++++RE +ELP+ HPE ++GID Sbjct: 33 LEADKERLERELSRLRSEMSRLRQPPAFAGSVIEVLDDDRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGID 169
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.781e-14 Identity = 37/87 (42.53%), Postives = 58/87 (66.67%), Query Frame = 1 Query: 409 KFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669 K++V + V+ +++ G+RV + + Y + LP K+DP V++M VE+ PD TY +GG EQI+++REV+ELP+ HPE LGI Sbjct: 141 KYLVKVEPGVNYDELKAGVRVALRSDSYDVHRILPTKVDPLVSLMMVEKVPDSTYQMIGGLDEQIKEIREVIELPIKHPELFENLGI 227
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14 Identity = 42/137 (30.66%), Postives = 74/137 (54.01%), Query Frame = 1 Query: 289 LVSDKQMMQEEQPLQVARCTKIISPNS---------EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672 L +DK+ ++ E + +++ P + +D + ++ +FVV + + + G RV +D+ I LP DP+V V E+P+VTYND+GG K+Q++++RE +ELP+ HPE ++GID Sbjct: 36 LEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGID 172
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13 Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = 1 Query: 352 IISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672 +I ED V N +FVV + + + G RV +D+ + LP DP+V V E+P+VTYND+GG K+Q++++RE +ELP+ HPE ++GID Sbjct: 67 VIEVLDEDRAIVQNYNG-PRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGID 172
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13 Identity = 50/175 (28.57%), Postives = 85/175 (48.57%), Query Frame = 1 Query: 172 YSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISP---------NSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669 YST I+K + ++K+ +K + ++ L ++ D+ + +++E + K+ P + K V+ F+V L V P DI G RV +++ I LP + D M +EEKPD+++ D+GG QI ++EVVELP+ +PE K+GI Sbjct: 7 YSTDIEKNKMDLKEFKEKTQ-IAELESKVLRLELKNK-DVTRENVQIKKENEILKRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGI 179
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13 Identity = 44/128 (34.38%), Postives = 70/128 (54.69%), Query Frame = 1 Query: 289 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672 L SD Q M++ PL V +I+ +D + ++ KFV + V ++E G V +++ + LP + D V M V+E PDV+Y+D+GG EQI ++REVVE P+ PE K+G++ Sbjct: 89 LRSDLQRMKKP-PLIVGTVEEIL----DDGRVIVKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVDESPDVSYDDIGGLDEQIREIREVVEKPLKEPELFEKVGVE 211 The following BLAST results are available for this feature:
BLAST of FC920233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 71
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920233 ID=FC920233; Name=FC920233; organism=Citrus clementina; type=EST; length=673bpback to top |