FC920233

Overview
NameFC920233
Unique NameFC920233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14102 contig Ccv1_Contig14102:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS8_PIG (26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 42/127 (33.07%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  289 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            L+ ++  + +EQ   V    + +    +  K ++ V    KFVV +   +   D+    RV +  + Y +   LP K+DP V++M VE+ PD TY  +GG  +QI++++EV+ELP+ HPE    LGI
Sbjct:   58 LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 42/127 (33.07%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  289 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            L+ ++  + +EQ   V    + +    +  K ++ V    KFVV +   +   D+    RV +  + Y +   LP K+DP V++M VE+ PD TY  +GG  +QI++++EV+ELP+ HPE    LGI
Sbjct:   58 LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 42/127 (33.07%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  289 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            L+ ++  + +EQ   V    + +    +  K ++ V    KFVV +   +   D+    RV +  + Y +   LP K+DP V++M VE+ PD TY  +GG  +QI++++EV+ELP+ HPE    LGI
Sbjct:   58 LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 42/127 (33.07%), Postives = 70/127 (55.12%), Query Frame = 1
Query:  289 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            L+ ++  + +EQ   V    + +    +  K ++ V    KFVV +   +   D+    RV +  + Y +   LP K+DP V++M VE+ PD TY  +GG  +QI++++EV+ELP+ HPE    LGI
Sbjct:   58 LLREELQLLQEQGSYVGEVVRAM----DKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 180          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.389e-14
Identity = 42/137 (30.66%), Postives = 75/137 (54.74%), Query Frame = 1
Query:  289 LVSDKQMMQEEQPLQVARCTKIISPNS---------EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672
            L +DK+ ++ E     +  +++  P +         +D + ++      +FVV +   +  + +  G RV +D+    I   LP   DP+V    V E+P+VTYND+GG K+Q++++RE +ELP+ HPE   ++GID
Sbjct:   33 LEADKERLERELSRLRSEMSRLRQPPAFAGSVIEVLDDDRAIVQNYNGPRFVVRIAPWIDKSKLRPGTRVALDQRTMAIIEILPASKDPAVLGFEVVERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGID 169          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.781e-14
Identity = 37/87 (42.53%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  409 KFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            K++V +   V+  +++ G+RV +  + Y +   LP K+DP V++M VE+ PD TY  +GG  EQI+++REV+ELP+ HPE    LGI
Sbjct:  141 KYLVKVEPGVNYDELKAGVRVALRSDSYDVHRILPTKVDPLVSLMMVEKVPDSTYQMIGGLDEQIKEIREVIELPIKHPELFENLGI 227          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 42/137 (30.66%), Postives = 74/137 (54.01%), Query Frame = 1
Query:  289 LVSDKQMMQEEQPLQVARCTKIISPNS---------EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672
            L +DK+ ++ E     +  +++  P +         +D + ++      +FVV +   +    +  G RV +D+    I   LP   DP+V    V E+P+VTYND+GG K+Q++++RE +ELP+ HPE   ++GID
Sbjct:   36 LEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWIERDKLRPGARVALDQRTMAIIELLPSSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGID 172          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 40/107 (37.38%), Postives = 61/107 (57.01%), Query Frame = 1
Query:  352 IISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672
            +I    ED   V N     +FVV +   +    +  G RV +D+    +   LP   DP+V    V E+P+VTYND+GG K+Q++++RE +ELP+ HPE   ++GID
Sbjct:   67 VIEVLDEDRAIVQNYNG-PRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPTVLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGID 172          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 50/175 (28.57%), Postives = 85/175 (48.57%), Query Frame = 1
Query:  172 YSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISP---------NSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            YST I+K + ++K+  +K   +  ++     L   ++ D+  +   +++E  +      K+  P            + K V+       F+V L   V P DI  G RV +++    I   LP + D     M +EEKPD+++ D+GG   QI  ++EVVELP+ +PE   K+GI
Sbjct:    7 YSTDIEKNKMDLKEFKEKTQ-IAELESKVLRLELKNK-DVTRENVQIKKENEILKRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGI 179          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 44/128 (34.38%), Postives = 70/128 (54.69%), Query Frame = 1
Query:  289 LVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672
            L SD Q M++  PL V    +I+    +D + ++      KFV  +   V   ++E G  V +++    +   LP + D  V  M V+E PDV+Y+D+GG  EQI ++REVVE P+  PE   K+G++
Sbjct:   89 LRSDLQRMKKP-PLIVGTVEEIL----DDGRVIVKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVDESPDVSYDDIGGLDEQIREIREVVEKPLKEPELFEKVGVE 211          
The following BLAST results are available for this feature:
BLAST of FC920233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
PRS8_PIG2.595e-1433.0726S protease regulatory subunit 8 OS=Sus scrofa GN... [more]
PRS8_MOUSE2.595e-1433.0726S protease regulatory subunit 8 OS=Mus musculus ... [more]
PRS8_HUMAN2.595e-1433.0726S protease regulatory subunit 8 OS=Homo sapiens ... [more]
PRS8_BOVIN2.595e-1433.0726S protease regulatory subunit 8 OS=Bos taurus GN... [more]
PSMR_PYRFU3.389e-1430.66Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PRS8_ENCCU5.781e-1442.5326S protease regulatory subunit 8 homolog OS=Encep... [more]
PSMR_PYRAB9.860e-1430.66Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PSMR_PYRHO2.197e-1337.38Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_METM72.197e-1328.57Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METKA2.197e-1334.38Proteasome-activating nucleotidase OS=Methanopyrus... [more]

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Properties
Property NameValue
Genbank descriptionC32005F09EF RVDevelop1 Citrus clementina cDNA clone C32005F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920233 ID=FC920233; Name=FC920233; organism=Citrus clementina; type=EST; length=673bp
GTTTGCACTTTTATTTCTCCGCTCGCAATCTTAAATCTTCAGTCTTCCAA
GCTAGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAGATCA
AGGACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCTTCTC
AAAACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGGAGAA
AGAAATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATCAAGG
AGTCTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTCGGAT
AAGCAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCACCAA
GATAATCAGTCCAAACTCTGAAGATGCCAAATATGTTATAAATGTTAAGC
AGATTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAACGGAT
ATAGAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGATTCA
AATTCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACCGTGG
AAGAGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGAGCAG
ATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGAA
ANTTGTAAAGCTTGGAATTGATC
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