FC920233

Overview
NameFC920233
Unique NameFC920233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14102 contig Ccv1_Contig14102:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 38/116 (32.76%), Postives = 68/116 (58.62%), Query Frame = 1
Query:  325 PLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672
            PL + +  ++I  N+     ++     + + V +   ++   ++    VG+DR+   +   LPP+ D S+++++  EKPDVTYND+GGC  Q +++RE VELP+ H E   ++GID
Sbjct:   81 PLVIGQFMEMIDQNNA----IVGSTTGSNYYVRILSTINRELLKPSASVGLDRHSNALVDVLPPEADSSISLLSQSEKPDVTYNDIGGCDIQKQEIREAVELPLTHHELYKQIGID 192          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 50/175 (28.57%), Postives = 84/175 (48.00%), Query Frame = 1
Query:  172 YSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISP---------NSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            YST ++K E ++K+  +K   L  ++     L   ++ D+  +   +++E  +      K+  P            + K V+       F+V L   V P DI  G RV +++    +   LP + D     M +EEKPD+ + D+GG   QI  ++EVVELP+ +PE   K+GI
Sbjct:    7 YSTDVQKNEMDLKEFKEKAY-LAELESKVLRLELKNK-DITRENVQIKKENEILKRELDKLRIPPLILGTVLDRVNERKAVVKSSTGPNFLVNLSQFVEPDDIVPGARVCLNQQTLAVVEVLPKEKDYRAMAMELEEKPDILFGDIGGLNNQIRDIKEVVELPLKNPELFEKVGI 179          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 50/175 (28.57%), Postives = 85/175 (48.57%), Query Frame = 1
Query:  172 YSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISP---------NSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            YST I+K + ++K+  +K   +  ++     L   ++ D+  +   +++E  +      K+  P            + K V+       F+V L   V P DI  G RV +++    I   LP + D     M +EEKPD+++ D+GG   QI  ++EVVELP+ +PE   K+GI
Sbjct:    7 YSTDIEKNKMDLKEFKEKTQ-IAELESKVLRLELKNK-DISRENVQIKKENEILKRELDKLRIPPLILGTILDRVNERKAVVKSSTGPNFLVNLSQFVDPDDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGI 179          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 62/214 (28.97%), Postives = 103/214 (48.13%), Query Frame = 1
Query:   43 SSKLAKESKAMAPE--PEDEIKDEKNPRP--LDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672
            S++L KE KA   E   E EI D  N +   L E+   L +   +    + I K E E K++ ++   L  +KE++          ++  +       PL V      +     + K V+       F+V +   V+P D+  G RV +++    +   LP   D     M V+E+P+V Y D+GG ++Q++++REVVELP+ HPE   K+GI+
Sbjct:    8 STELKKEKKAFTEEFKEEKEINDNSNLKNDLLKEE---LQEKARIAELESRILKLELEKKELERENLQL--MKENE----------ILRRELDRMRVPPLIVGTVVDKVG----ERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPENKDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIE 202          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.747e-13
Identity = 36/101 (35.64%), Postives = 61/101 (60.40%), Query Frame = 1
Query:  370 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672
            +D + ++      +FVV +   +    ++ G RV +D+    I   LP + DPSV    V E+P VTYND+GG ++Q++++RE +ELP+ HPE   ++GI+
Sbjct:   70 DDERAIVQNYNGPRFVVRIAPWIERDKLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPKVTYNDIGGLEKQLQELREAIELPLKHPELFEQVGIE 170          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.747e-13
Identity = 50/175 (28.57%), Postives = 85/175 (48.57%), Query Frame = 1
Query:  172 YSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISP---------NSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            YST I+K + ++K+  +K   +  ++     L   ++ D+  +   +++E  +      K+  P            + K V+       F+V L   V P DI  G RV +++    I   LP + D     M +EEKPD+++ D+GG   QI  ++EVVELP+ +PE   K+GI
Sbjct:    7 YSTDIEKNKMDLKEFKEKTQ-IAELESKVLRLELKNK-DINRENVQIKKENEILKRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGI 179          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.747e-13
Identity = 49/175 (28.00%), Postives = 85/175 (48.57%), Query Frame = 1
Query:  172 YSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISP---------NSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            YST ++K + ++K+  +K   +  ++     L   ++ D+  +   +++E  +      K+  P            + K V+       F+V L   V P DI  G RV +++    I   LP + D     M +EEKPD+++ D+GG   QI  ++EVVELP+ +PE   K+GI
Sbjct:    7 YSTDVEKNKMDLKEFKEKTQ-IAELESKVLRLELKNK-DISRENVQIKKENEILKRELDKLRIPPLILGTILDRVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPELFEKVGI 179          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 33/100 (33.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  370 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            +  ++++      ++VVG  + V  + + +G+RV +D     I   LP ++DP V  M++E+  D+++  VGG  EQI ++REV+ELP+ +PE  +++GI
Sbjct:   64 DSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGI 163          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.347e-13
Identity = 35/88 (39.77%), Postives = 56/88 (63.64%), Query Frame = 1
Query:  409 KFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672
            +FVV +   +   +++ G RV +D+    I   LP + DPSV    V E+P V+YND+GG  +Q++++RE +ELP+ HPE   K+GI+
Sbjct:   84 RFVVRIAPWIERENLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPTVSYNDIGGLDKQLQELREAIELPLKHPELFEKVGIE 171          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.347e-13
Identity = 43/137 (31.39%), Postives = 71/137 (51.82%), Query Frame = 1
Query:  289 LVSDKQMMQEEQPLQVARCTKIISPNS---------EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672
            L +DK+ ++ E        +++  P +         +D + ++      +FVV +   +    ++ G RV +D+    I   LP + DPSV    V EKP VTY D+GG + Q+ ++RE VELP+ HPE   K+GI+
Sbjct:   34 LEADKERLERELSRLRTEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWIERDKLKPGSRVALDQRTMAIVELLPTEKDPSVLGFEVIEKPRVTYQDIGGLERQLAELREAVELPLKHPELFEKVGIE 170          
The following BLAST results are available for this feature:
BLAST of FC920233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
PRS6B_SOLTU2.197e-1332.7626S protease regulatory subunit 6B homolog OS=Sola... [more]
PSMR_METVS2.869e-1328.57Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM52.869e-1328.57Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METJA2.869e-1328.97Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PSMR_PYRKO3.747e-1335.64Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PSMR_METMP3.747e-1328.57Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM63.747e-1328.00Proteasome-activating nucleotidase OS=Methanococcu... [more]
PRS10_SCHPO4.894e-1333.00Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PSMR_THEON8.347e-1339.77Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_THEGJ8.347e-1331.39Proteasome-activating nucleotidase OS=Thermococcus... [more]

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Properties
Property NameValue
Genbank descriptionC32005F09EF RVDevelop1 Citrus clementina cDNA clone C32005F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920233 ID=FC920233; Name=FC920233; organism=Citrus clementina; type=EST; length=673bp
GTTTGCACTTTTATTTCTCCGCTCGCAATCTTAAATCTTCAGTCTTCCAA
GCTAGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAGATCA
AGGACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCTTCTC
AAAACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGGAGAA
AGAAATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATCAAGG
AGTCTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTCGGAT
AAGCAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCACCAA
GATAATCAGTCCAAACTCTGAAGATGCCAAATATGTTATAAATGTTAAGC
AGATTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAACGGAT
ATAGAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGATTCA
AATTCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACCGTGG
AAGAGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGAGCAG
ATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGAA
ANTTGTAAAGCTTGGAATTGATC
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