FC920233
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4) HSP 1 Score: 72.4034 bits (176), Expect = 2.429e-12 Identity = 34/99 (34.34%), Postives = 62/99 (62.63%), Query Frame = 1 Query: 373 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669 + KY++ +++VG+ + V + +++G+RV +D I LP + DP V MT E+ ++T++ +GG EQI ++REV+ELP+ +PE ++GI Sbjct: 114 EEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI 212
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.429e-12 Identity = 47/162 (29.01%), Postives = 83/162 (51.23%), Query Frame = 1 Query: 196 EKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQ----VARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669 +K ++D KK L KE D L + KQ + E L+ V + + + K+++ ++VVG ++ + ++ G RV +D I LP ++DP V M+ E+ +V+Y+++GG EQI ++REV+ELP+ +PE ++GI Sbjct: 6 DKALQDYRKK---LLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGI 164
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.429e-12 Identity = 47/162 (29.01%), Postives = 83/162 (51.23%), Query Frame = 1 Query: 196 EKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQ----VARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669 +K ++D KK L KE D L + KQ + E L+ V + + + K+++ ++VVG ++ + ++ G RV +D I LP ++DP V M+ E+ +V+Y+++GG EQI ++REV+ELP+ +PE ++GI Sbjct: 6 DKALQDYRKK---LLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGI 164
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.429e-12 Identity = 47/162 (29.01%), Postives = 83/162 (51.23%), Query Frame = 1 Query: 196 EKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQ----VARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669 +K ++D KK L KE D L + KQ + E L+ V + + + K+++ ++VVG ++ + ++ G RV +D I LP ++DP V M+ E+ +V+Y+++GG EQI ++REV+ELP+ +PE ++GI Sbjct: 6 DKALQDYRKK---LLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGI 164
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.429e-12 Identity = 47/162 (29.01%), Postives = 83/162 (51.23%), Query Frame = 1 Query: 196 EKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQ----VARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669 +K ++D KK L KE D L + KQ + E L+ V + + + K+++ ++VVG ++ + ++ G RV +D I LP ++DP V M+ E+ +V+Y+++GG EQI ++REV+ELP+ +PE ++GI Sbjct: 6 DKALQDYRKK---LLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGI 164
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12 Identity = 58/206 (28.16%), Postives = 95/206 (46.12%), Query Frame = 1 Query: 127 DEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCG-----IKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSED----------------AKYVI----NVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669 +ED +A + T + + ++ + +K+ A++ N C IKE+ +K + ++ P V +I+ N ED K V+ + I VVGL V P ++ G VGV+++ Y I LP + D V M V+EKP YND+GG ++QI+++ E + LPM H E+ KLG+ Sbjct: 13 EEDQLASMSTEDIVRATRLLENEIRILKEDAQRTNLECDSYKEKIKENQ-------------EKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGL---VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGV 202
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12 Identity = 58/206 (28.16%), Postives = 94/206 (45.63%), Query Frame = 1 Query: 127 DEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCG-----IKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSED----------------AKYVI----NVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669 +ED +A + T + + + + +K+ A++ N C IKE+ +K + ++ P V +I+ N ED K V+ + I VVGL V P ++ G VGV+++ Y I LP + D V M V+EKP YND+GG ++QI+++ E + LPM H E+ KLG+ Sbjct: 13 EEDQLASMSTEDITRATRLLDNEIRILKEDAQRTNLECDSYKEKIKENQ-------------EKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGL---VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGV 202
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3) HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12 Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1 Query: 415 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669 VVGL V P ++ G VGV+++ Y I LP + D V M V+EKP YND+GG ++QI+++ E + LPM H E+ KLGI Sbjct: 120 VVGL---VDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGI 201
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11 Identity = 35/100 (35.00%), Postives = 59/100 (59.00%), Query Frame = 1 Query: 373 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672 D + ++ VV + + I+ G+ V +++ I LP K DP V M + EKP+VTY+++GG +EQI+++REVVELP+ PE ++G++ Sbjct: 67 DGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVE 166
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11 Identity = 35/100 (35.00%), Postives = 59/100 (59.00%), Query Frame = 1 Query: 373 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672 D + ++ VV + + I+ G+ V +++ I LP K DP V M + EKP+VTY+++GG +EQI+++REVVELP+ PE ++G++ Sbjct: 67 DGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVE 166 The following BLAST results are available for this feature:
BLAST of FC920233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 71
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920233 ID=FC920233; Name=FC920233; organism=Citrus clementina; type=EST; length=673bpback to top |