FC920233

Overview
NameFC920233
Unique NameFC920233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14102 contig Ccv1_Contig14102:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 72.4034 bits (176), Expect = 2.429e-12
Identity = 34/99 (34.34%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  373 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            + KY++      +++VG+ + V  + +++G+RV +D     I   LP + DP V  MT  E+ ++T++ +GG  EQI ++REV+ELP+ +PE   ++GI
Sbjct:  114 EEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI 212          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.429e-12
Identity = 47/162 (29.01%), Postives = 83/162 (51.23%), Query Frame = 1
Query:  196 EKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQ----VARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            +K ++D  KK   L   KE D  L    +      KQ  + E  L+    V +    +     + K+++      ++VVG   ++  + ++ G RV +D     I   LP ++DP V  M+ E+  +V+Y+++GG  EQI ++REV+ELP+ +PE   ++GI
Sbjct:    6 DKALQDYRKK---LLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGI 164          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.429e-12
Identity = 47/162 (29.01%), Postives = 83/162 (51.23%), Query Frame = 1
Query:  196 EKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQ----VARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            +K ++D  KK   L   KE D  L    +      KQ  + E  L+    V +    +     + K+++      ++VVG   ++  + ++ G RV +D     I   LP ++DP V  M+ E+  +V+Y+++GG  EQI ++REV+ELP+ +PE   ++GI
Sbjct:    6 DKALQDYRKK---LLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGI 164          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.429e-12
Identity = 47/162 (29.01%), Postives = 83/162 (51.23%), Query Frame = 1
Query:  196 EKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQ----VARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            +K ++D  KK   L   KE D  L    +      KQ  + E  L+    V +    +     + K+++      ++VVG   ++  + ++ G RV +D     I   LP ++DP V  M+ E+  +V+Y+++GG  EQI ++REV+ELP+ +PE   ++GI
Sbjct:    6 DKALQDYRKK---LLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGI 164          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.429e-12
Identity = 47/162 (29.01%), Postives = 83/162 (51.23%), Query Frame = 1
Query:  196 EKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQ----VARCTKIISPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            +K ++D  KK   L   KE D  L    +      KQ  + E  L+    V +    +     + K+++      ++VVG   ++  + ++ G RV +D     I   LP ++DP V  M+ E+  +V+Y+++GG  EQI ++REV+ELP+ +PE   ++GI
Sbjct:    6 DKALQDYRKK---LLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGI 164          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.172e-12
Identity = 58/206 (28.16%), Postives = 95/206 (46.12%), Query Frame = 1
Query:  127 DEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCG-----IKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSED----------------AKYVI----NVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            +ED +A + T  +   +  ++   + +K+ A++ N  C      IKE+              +K  + ++ P  V    +I+  N ED                 K V+      + I   VVGL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG ++QI+++ E + LPM H E+  KLG+
Sbjct:   13 EEDQLASMSTEDIVRATRLLENEIRILKEDAQRTNLECDSYKEKIKENQ-------------EKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGL---VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGV 202          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PS6AA_ARATH (26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.143e-12
Identity = 58/206 (28.16%), Postives = 94/206 (45.63%), Query Frame = 1
Query:  127 DEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCG-----IKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSED----------------AKYVI----NVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            +ED +A + T  +   +  +    + +K+ A++ N  C      IKE+              +K  + ++ P  V    +I+  N ED                 K V+      + I   VVGL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG ++QI+++ E + LPM H E+  KLG+
Sbjct:   13 EEDQLASMSTEDITRATRLLDNEIRILKEDAQRTNLECDSYKEKIKENQ-------------EKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGL---VDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGV 202          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PS6AB_ARATH (26S protease regulatory subunit 6A homolog B OS=Arabidopsis thaliana GN=RPT5B PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 38/85 (44.71%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  415 VVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            VVGL   V P  ++ G  VGV+++ Y I   LP + D  V  M V+EKP   YND+GG ++QI+++ E + LPM H E+  KLGI
Sbjct:  120 VVGL---VDPDTLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGI 201          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 35/100 (35.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:  373 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672
            D + ++        VV +   +    I+ G+ V +++    I   LP K DP V  M + EKP+VTY+++GG +EQI+++REVVELP+  PE   ++G++
Sbjct:   67 DGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVE 166          
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 35/100 (35.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:  373 DAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGID 672
            D + ++        VV +   +    I+ G+ V +++    I   LP K DP V  M + EKP+VTY+++GG +EQI+++REVVELP+  PE   ++G++
Sbjct:   67 DGRVLVRSSSGPNLVVNVASHIDQKLIKPGVSVALNQRGSTILEVLPQKEDPIVKTMEIVEKPNVTYSEIGGLEEQIKELREVVELPLKKPEIFREIGVE 166          
The following BLAST results are available for this feature:
BLAST of FC920233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
PRS10_YEAST2.429e-1234.3426S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
PRS10_SPETR2.429e-1229.0126S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE2.429e-1229.0126S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN2.429e-1229.0126S protease regulatory subunit S10B OS=Homo sapie... [more]
PRS10_BOVIN2.429e-1229.0126S protease regulatory subunit S10B OS=Bos taurus... [more]
PRS6A_BRACM3.172e-1228.1626S protease regulatory subunit 6A homolog OS=Bras... [more]
PS6AA_ARATH4.143e-1228.1626S protease regulatory subunit 6A homolog A OS=Ar... [more]
PS6AB_ARATH7.066e-1244.7126S protease regulatory subunit 6A homolog B OS=Ar... [more]
PSMR_SULIY1.205e-1135.00Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIN1.205e-1135.00Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32005F09EF RVDevelop1 Citrus clementina cDNA clone C32005F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920233 ID=FC920233; Name=FC920233; organism=Citrus clementina; type=EST; length=673bp
GTTTGCACTTTTATTTCTCCGCTCGCAATCTTAAATCTTCAGTCTTCCAA
GCTAGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAGATCA
AGGACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCTTCTC
AAAACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGGAGAA
AGAAATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATCAAGG
AGTCTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTCGGAT
AAGCAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCACCAA
GATAATCAGTCCAAACTCTGAAGATGCCAAATATGTTATAAATGTTAAGC
AGATTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAACGGAT
ATAGAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGATTCA
AATTCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACCGTGG
AAGAGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGAGCAG
ATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGAA
ANTTGTAAAGCTTGGAATTGATC
back to top