FC920233

Overview
NameFC920233
Unique NameFC920233
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14102 contig Ccv1_Contig14102:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920233 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 32/100 (32.00%), Postives = 58/100 (58.00%), Query Frame = 1 
Query:  370 EDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKXVKLGI 669
            ++ + ++      ++VVG   KV    +  G RV +D     I   LP ++DP V  M  E+  +++Y+ VGG  +QI ++RE +ELP+++PE  +++GI
Sbjct:   71 DNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGI 170
The following BLAST results are available for this feature:
BLAST of FC920233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
PS10A_ARATH7.813e-1132.0026S protease regulatory subunit 10B homolog A OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32005F09EF RVDevelop1 Citrus clementina cDNA clone C32005F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920233 ID=FC920233; Name=FC920233; organism=Citrus clementina; type=EST; length=673bp
GTTTGCACTTTTATTTCTCCGCTCGCAATCTTAAATCTTCAGTCTTCCAA
GCTAGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAGATCA
AGGACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCTTCTC
AAAACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGGAGAA
AGAAATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATCAAGG
AGTCTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTCGGAT
AAGCAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCACCAA
GATAATCAGTCCAAACTCTGAAGATGCCAAATATGTTATAAATGTTAAGC
AGATTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAACGGAT
ATAGAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGATTCA
AATTCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACCGTGG
AAGAGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGAGCAG
ATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTGAGAA
ANTTGTAAAGCTTGGAATTGATC
back to top