FC920234

Overview
NameFC920234
Unique NameFC920234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14103 contig Ccv1_Contig14103:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_STRAW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptomyces avermitilis GN=gatA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.526e-33
Identity = 65/158 (41.14%), Postives = 106/158 (67.09%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNN-VLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            E+TA Q+ E +L+R+   + ++ +F+HV     L +A+++D+K +R E +GPLAGV + +KD   T  +P+T GS++LE + PP+DAT  KK+K  D +++GKTN+DEF MGS+TE+S++  T NPWD+SR+P              +  +++G+DTG
Sbjct:   24 ELTAVQVTEAHLARIDAVDEKVHAFLHVDREGALAQARAVDEKRERGEKLGPLAGVPLALKDIFTTEGIPTTVGSKILEGWIPPYDATLTKKLKAADVVILGKTNMDEFAMGSSTENSAYGPTGNPWDLSRIPGGSGGGSSAALASFEAPLAIGTDTG 181          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_STRCO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Streptomyces coelicolor GN=gatA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.008e-32
Identity = 63/158 (39.87%), Postives = 107/158 (67.72%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNN-VLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            E+TA Q+ E +L+R++  + ++ +F+HV     L +A+++D+K +R E +GPLAGV + +KD   T  +P+T GS++LE + PP+DAT  K++K  D +++GKTN+DEF MGS+TE+S++  T NPWD++++P              Q  +++G+DTG
Sbjct:   20 ELTAVQVTEAHLARIEAVDEKVHAFLHVDREGALAQARAVDEKRERGEKLGPLAGVPLALKDIFTTEGIPTTVGSKILEGWIPPYDATVTKRLKAADVVILGKTNMDEFAMGSSTENSAYGPTGNPWDLTKIPGGSGGGSSAALAAFQAPLAIGTDTG 177          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_DESRM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfotomaculum reducens (strain MI-1) GN=gatA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.008e-32
Identity = 64/159 (40.25%), Postives = 105/159 (66.04%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLK-EAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E++A  + E   +R++  E ++KS++ ++    + +A+ +D KI   E++GPLAG+ + +KDN+CT  + +T  S++L N+ PP+ AT+V+KV   D ++VGKTN+DEF MGS+TE+S F +T NPWD+ RVP              + ++SLGSDTG
Sbjct:   18 KEISALDITEAVYNRIEQVEDKVKSYLTLTREQAEIKARQVDQKIAAGESIGPLAGIPIAIKDNMCTQGIRTTCASKILYNFVPPYSATSVEKVYTADMVMVGKTNMDEFAMGSSTENSGFHLTHNPWDLDRVPGGSSGGSAAAVAAGEAIISLGSDTG 176          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CLOBH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=gatA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.934e-32
Identity = 64/159 (40.25%), Postives = 105/159 (66.04%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNN-VLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +EV A ++ + +L R+ L + +L ++++VS    +K+A+ ID KI++NE +  L+G+ VG+KDNI    M +T  S++LE Y  P+DA   +K+K+ +GI++GK N+DEF MGS+TE+S+F++  NPWD+ RVP              +  +SLG+DTG
Sbjct:   18 KEVKAEEITKAFLDRINLVDNKLGAYLYVSEEEAIKKAKEIDGKIEKNEELKALSGIPVGIKDNINVKGMQNTCASKILEGYTSPYDAHVTEKIKQEEGIILGKLNMDEFAMGSSTENSAFKLAKNPWDLERVPGGSSGGSAVAVAGSEATLSLGTDTG 176          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CLOB1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=gatA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.934e-32
Identity = 64/159 (40.25%), Postives = 105/159 (66.04%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNN-VLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +EV A ++ + +L R+ L + +L ++++VS    +K+A+ ID KI++NE +  L+G+ VG+KDNI    M +T  S++LE Y  P+DA   +K+K+ +GI++GK N+DEF MGS+TE+S+F++  NPWD+ RVP              +  +SLG+DTG
Sbjct:   18 KEVKAEEITKAFLDRINLVDNKLGAYLYVSEEEAIKKAKEIDGKIEKNEELKALSGIPVGIKDNINVKGMQNTCASKILEGYTSPYDAHVTEKIKQEEGIILGKLNMDEFAMGSSTENSAFKLAKNPWDLERVPGGSSGGSAVAVAGSEATLSLGTDTG 176          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CLOBL (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=gatA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.004e-32
Identity = 64/159 (40.25%), Postives = 105/159 (66.04%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNN-VLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +EV A ++ + +L R+ L + +L ++++VS    +K+A+ ID KI++NE +  L+G+ VG+KDNI    M +T  S++LE Y  P+DA   +K+K+ +GI++GK N+DEF MGS+TE+S+F++  NPWD+ RVP              +  +SLG+DTG
Sbjct:   18 KEVKAEEITKAFLDRINLVDNKLGAYLYVSEEEAIKKAKEIDVKIEKNEELKALSGIPVGIKDNINVKGMQNTCASKILEGYTSPYDAHVTEKIKQEEGIILGKLNMDEFAMGSSTENSAFKLAKNPWDLERVPGGSSGGSAVAVAGSEATLSLGTDTG 176          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CLOBK (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Okra / Type B1) GN=gatA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.535e-32
Identity = 63/159 (39.62%), Postives = 105/159 (66.04%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNN-VLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +EV A ++ + +L R+ L + +L ++++VS    +K+A+ ID KI++NE +  L+G+ +G+KDNI    M +T  S++LE Y  P+DA   +K+K+ +GI++GK N+DEF MGS+TE+S+F++  NPWD+ RVP              +  +SLG+DTG
Sbjct:   18 KEVKAEEITKAFLDRINLVDNKLGAYLYVSEEEAIKKAKEIDVKIEKNEELKALSGIPIGIKDNINVKGMQNTCASKILEGYTSPYDAHVTEKIKQEEGIILGKLNMDEFAMGSSTENSAFKLAKNPWDLERVPGGSSGGSAVAVAGSEATLSLGTDTG 176          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CHLSY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=gatA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.535e-32
Identity = 62/158 (39.24%), Postives = 105/158 (66.46%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++TA +L E  L+R+   EP +++F+H++ +  L  A++ D++ ++  ++GPL G+ + +KD ICT  +P+TAGSR+L  +RPP++AT ++++     ++VGK N DEF MGS+TE+S++Q+T NPWD +RVP              Q   +LG+DTG
Sbjct:   20 DITAVELTEACLARINATEPTIRAFLHLTPDAALAAARAADERRQQGRSLGPLDGIPIAIKDVICTDGVPTTAGSRILAGFRPPYNATVIERLVAAGAVLVGKLNCDEFAMGSSTENSAYQITTNPWDPTRVPGGSSGGSAAAVAAGQVPATLGTDTG 177          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CHLMU (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlamydia muridarum GN=gatA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.535e-32
Identity = 68/159 (42.77%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            RE++ T + E +  R++  + Q+ SF+ +     L  A  IDDK+ + + +G LAG+ +GVKDNI    + +T  S++LEN+  PFDAT V++++  DGI++GK N+DEF MGSTT  S+FQ T NPWD+ RVP             R C ++LGSDTG
Sbjct:   16 REISVTAITEYFYHRIESYDEQIGSFLSLCKERALLRASRIDDKLAKGDPIGILAGIPIGVKDNIHITGVKTTCASKMLENFVAPFDATVVRRIEMEDGILLGKLNMDEFAMGSTTRYSAFQHTNNPWDLERVPGGSSGGSAAAVSARFCPIALGSDTG 174          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CHLAA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=gatA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.535e-32
Identity = 62/158 (39.24%), Postives = 105/158 (66.46%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++TA +L E  L+R+   EP +++F+H++ +  L  A++ D++ ++  ++GPL G+ + +KD ICT  +P+TAGSR+L  +RPP++AT ++++     ++VGK N DEF MGS+TE+S++Q+T NPWD +RVP              Q   +LG+DTG
Sbjct:   20 DITAVELTEACLARINATEPTIRAFLHLTPDAALAAARAADERRQQGRSLGPLDGIPIAIKDVICTDGVPTTAGSRILAGFRPPYNATVIERLVAAGAVLVGKLNCDEFAMGSSTENSAYQITTNPWDPTRVPGGSSGGSAAAVAAGQVPATLGTDTG 177          
The following BLAST results are available for this feature:
BLAST of FC920234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_STRAW4.526e-3341.14Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_STRCO1.008e-3239.87Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_DESRM1.008e-3240.25Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_CLOBH2.934e-3240.25Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CLOB12.934e-3240.25Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CLOBL5.004e-3240.25Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CLOBK6.535e-3239.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLSY6.535e-3239.24Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLMU6.535e-3242.77Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLAA6.535e-3239.24Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionC32005F10EF RVDevelop1 Citrus clementina cDNA clone C32005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920234 ID=FC920234; Name=FC920234; organism=Citrus clementina; type=EST; length=697bp
GGAGACTCTCTGGAAGCGGGGATCGAGATACAAAAGCAATGCTGTCGACT
CTCCACCATCCTCCGCGGAGGCTCTCTCGGTTCTTCCCAGCCAATAATAA
ACCCCGCCATTTTCACGCAAAACCCGTTCTCTCTTCCTCACAGCCCGTCA
CCGACCAATCGCCTTCCTCTACGTCACCGCCCGAATCCCAAATCCTCTCC
ATCCATCACTCCCTCCTCTCCCGCGAGGTCACCGCCACCCAGCTCGCCGA
AACCTACCTATCCCGTCTTAAGCTCGCCGAACCGCAACTCAAGTCCTTCA
TCCACGTCTCCAACAATGTGCTAAAAGAAGCACAATCCATCGATGATAAG
ATCAAGAGAAACGAAAACGTGGGGCCCCTTGCTGGGGTTTTGGTTGGGGT
TAAAGATAATATATGTACGGTGGATATGCCGTCTACGGCTGGCTCTAGAG
TCTTGGAGAATTATCGTCCGCCTTTCGATGCCACTGCGGTTAAGAAAGTG
AAGGAATTTGATGGGATTGTGGTGGGTAAGACCAATTTGGATGAGTTTGG
GATGGGCAGCACCACTGAATCTTCTTCTTTTCAGGTGACTGCAAATCCTT
GGGATATTTCTCGGGTGCCAGGAGGATCATCGGGAGGCTCAGCTGCAGCT
GTTTCTGCTAGGCAGTGCGTAGTGTCTCTGGGGAGTGATACTGGTGG
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