FC920234

Overview
NameFC920234
Unique NameFC920234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14103 contig Ccv1_Contig14103:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CYAP4 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=gatA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30
Identity = 58/159 (36.48%), Postives = 104/159 (65.41%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E +A ++ +  L +++  EP++ +F+ ++    L +A+ +D +I     +G LAG+ + +KDN+CT  +P+T GS++L+ + PP+++T   ++     ++VGKTNLDEF MGS+TE+S++Q+TANPWD+ RVP              + +++LGSDTG
Sbjct:   14 KERSAKEITQDALEKIQQLEPKVHAFLTLTAEQALAQAERVDQQIATGTEIGLLAGIPIAIKDNLCTKGIPTTCGSKILQGFIPPYESTVTSRLAAAGAVMVGKTNLDEFAMGSSTENSAYQLTANPWDLQRVPGGSSGGSAAAVAAGETLIALGSDTG 172          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CHLTR (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlamydia trachomatis GN=gatA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30
Identity = 65/159 (40.88%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            RE++ T + E +  R++  + Q+ +F+ +     L  A  IDDK+ + + +G LAG+ +GVKDNI    + +T  S++LEN+  PFD+T V++++  DGI++GK N+DEF MGSTT  S+F  T NPWD+ RVP             R C ++LGSDTG
Sbjct:   16 RELSVTAITEYFYHRIESHDEQIGAFLSLCKERALLRASRIDDKLAKGDPIGLLAGIPIGVKDNIHITGVKTTCASKMLENFVAPFDSTVVRRIEMEDGILLGKLNMDEFAMGSTTRYSAFHPTNNPWDLERVPGGSSGGSAAAVSARFCPIALGSDTG 174          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CHLTB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=gatA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30
Identity = 65/159 (40.88%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            RE++ T + E +  R++  + Q+ +F+ +     L  A  IDDK+ + + +G LAG+ +GVKDNI    + +T  S++LEN+  PFD+T V++++  DGI++GK N+DEF MGSTT  S+F  T NPWD+ RVP             R C ++LGSDTG
Sbjct:   16 RELSVTAITEYFYHRIESHDEQIGAFLSLCKERALLRASRIDDKLAKGDPIGLLAGIPIGVKDNIHITGVKTTCASKMLENFVAPFDSTVVRRIEMEDGILLGKLNMDEFAMGSTTRYSAFHPTNNPWDLERVPGGSSGGSAAAVSARFCPIALGSDTG 174          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CHLTA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=gatA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30
Identity = 65/159 (40.88%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            RE++ T + E +  R++  + Q+ +F+ +     L  A  IDDK+ + + +G LAG+ +GVKDNI    + +T  S++LEN+  PFD+T V++++  DGI++GK N+DEF MGSTT  S+F  T NPWD+ RVP             R C ++LGSDTG
Sbjct:   16 RELSVTAITEYFYHRIESHDEQIGAFLSLCKERALLRASRIDDKLAKGDPIGLLAGIPIGVKDNIHITGVKTTCASKMLENFVAPFDSTVVRRIEMEDGILLGKLNMDEFAMGSTTRYSAFHPTNNPWDLERVPGGSSGGSAAAVSARFCPIALGSDTG 174          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CHLT2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=gatA PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30
Identity = 65/159 (40.88%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            RE++ T + E +  R++  + Q+ +F+ +     L  A  IDDK+ + + +G LAG+ +GVKDNI    + +T  S++LEN+  PFD+T V++++  DGI++GK N+DEF MGSTT  S+F  T NPWD+ RVP             R C ++LGSDTG
Sbjct:   16 RELSVTAITEYFYHRIESHDEQIGAFLSLCKERALLRASRIDDKLAKGDPIGLLAGIPIGVKDNIHITGVKTTCASKMLENFVAPFDSTVVRRIEMEDGILLGKLNMDEFAMGSTTRYSAFHPTNNPWDLERVPGGSSGGSAAAVSARFCPIALGSDTG 174          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_DESAP (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulforudis audaxviator (strain MP104C) GN=gatA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.102e-30
Identity = 62/159 (38.99%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNN-VLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            REV+A +L  + L+R+   E ++K+++ +     L++A ++D +++    + PLAG+   +KDNIC   +P+T  S++L N+ PP+DAT V+K+K+   +++GKTN+DEF MGS+TE S+F  T NPWD  RVP                + +LGSDTG
Sbjct:   18 REVSAAELCRSVLNRIDEVEGRVKAYVTLDREGALRQAAAVDRELQNGRELPPLAGIPFAIKDNICLRGLPATCSSKILHNWVPPYDATVVEKLKDQQTVILGKTNMDEFAMGSSTEHSAFFTTRNPWDPKRVPGGSSGGSAAAVAAGSAICALGSDTG 176          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_THET8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=gatA PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 69/157 (43.95%), Postives = 103/157 (65.61%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            EV+  ++A+ YL R++  +P L +F+ ++  +L+EA+++D  +       PLAG++V VKDNI T  + +TAGSR+LEN+ PP++ATAV ++K    +V+GKTNLDEFGMGS+TE S+F  T NP+D  RVP                 ++LGSDTG
Sbjct:   14 EVSPLEVAQAYLKRVQELDPGLGAFLSLNERLLEEAEAVDPGL-------PLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTG 163          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_THET2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=gatA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 69/157 (43.95%), Postives = 103/157 (65.61%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            EV+  ++A+ YL R++  +P L +F+ ++  +L+EA+++D  +       PLAG++V VKDNI T  + +TAGSR+LEN+ PP++ATAV ++K    +V+GKTNLDEFGMGS+TE S+F  T NP+D  RVP                 ++LGSDTG
Sbjct:   14 EVSPLEVAQAYLKRVQELDPGLGAFLSLNERLLEEAEAVDPGL-------PLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTG 163          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_PROM2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9215) GN=gatA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 62/153 (40.52%), Postives = 100/153 (65.36%), Query Frame = 3
Query:  240 QLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +L   +  ++K  +P++ S+I  + +N +++A++ID  I+  E + PLAG+ + +KDNICT  + +T  S++L+++ PP+++TA  K+    GI +GKTNLDEF MGS+TE+S F VT+NPWDI+RVP               C  ++GSDTG
Sbjct:   19 ELVNDFFDKIKHKDPEINSYICTTKDNAIEQAENIDKLIQNKEKLPPLAGIPIAIKDNICTKGVATTCASKMLKSFVPPYESTASSKLWSSGGICLGKTNLDEFAMGSSTETSLFGVTSNPWDINRVPGGSSGGSAASVAAGFCAAAIGSDTG 171          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CLOTE (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium tetani GN=gatA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.746e-30
Identity = 59/159 (37.11%), Postives = 104/159 (65.41%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +EV   ++ ++YL+R++  + ++ +F++  S   +K+A+ +D+KI + E++  L G+ V +KDNI    M +T  S++LE Y+ P+DA  ++K+K  DGI++GK N+DEF MGS+TE+S+++ T NPWD+ RVP              +  ++LG+DTG
Sbjct:   18 KEVKVEEVVQSYLNRIEKVDSKVGAFLYTGSEEAIKKAKELDNKISKGESLKALGGIPVSIKDNISVKGMQNTCASKMLEGYKSPYDAHVIEKIKNEDGIILGKVNMDEFAMGSSTENSAYKKTRNPWDLDRVPGGSSGGSAAAVAAMETPLALGTDTG 176          
The following BLAST results are available for this feature:
BLAST of FC920234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_CYAP41.610e-3036.48Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLTR1.610e-3040.88Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLTB1.610e-3040.88Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLTA1.610e-3040.88Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_CHLT21.610e-3040.88Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_DESAP2.102e-3038.99Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_THET82.746e-3043.95Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_THET22.746e-3043.95Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_PROM22.746e-3040.52Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_CLOTE2.746e-3037.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]

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Properties
Property NameValue
Genbank descriptionC32005F10EF RVDevelop1 Citrus clementina cDNA clone C32005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920234 ID=FC920234; Name=FC920234; organism=Citrus clementina; type=EST; length=697bp
GGAGACTCTCTGGAAGCGGGGATCGAGATACAAAAGCAATGCTGTCGACT
CTCCACCATCCTCCGCGGAGGCTCTCTCGGTTCTTCCCAGCCAATAATAA
ACCCCGCCATTTTCACGCAAAACCCGTTCTCTCTTCCTCACAGCCCGTCA
CCGACCAATCGCCTTCCTCTACGTCACCGCCCGAATCCCAAATCCTCTCC
ATCCATCACTCCCTCCTCTCCCGCGAGGTCACCGCCACCCAGCTCGCCGA
AACCTACCTATCCCGTCTTAAGCTCGCCGAACCGCAACTCAAGTCCTTCA
TCCACGTCTCCAACAATGTGCTAAAAGAAGCACAATCCATCGATGATAAG
ATCAAGAGAAACGAAAACGTGGGGCCCCTTGCTGGGGTTTTGGTTGGGGT
TAAAGATAATATATGTACGGTGGATATGCCGTCTACGGCTGGCTCTAGAG
TCTTGGAGAATTATCGTCCGCCTTTCGATGCCACTGCGGTTAAGAAAGTG
AAGGAATTTGATGGGATTGTGGTGGGTAAGACCAATTTGGATGAGTTTGG
GATGGGCAGCACCACTGAATCTTCTTCTTTTCAGGTGACTGCAAATCCTT
GGGATATTTCTCGGGTGCCAGGAGGATCATCGGGAGGCTCAGCTGCAGCT
GTTTCTGCTAGGCAGTGCGTAGTGTCTCTGGGGAGTGATACTGGTGG
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