FC920234

Overview
NameFC920234
Unique NameFC920234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14103 contig Ccv1_Contig14103:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CHLAB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Chlamydophila abortus GN=gatA PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.684e-30
Identity = 66/158 (41.77%), Postives = 100/158 (63.29%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            E +AT +A+ + +R+K  + Q+ +F+ +      ++A  ID K+ R E +G LAGV +G+KDNI    + +T  S++LENY  PFDAT V++++  DG+++GK N+DEF MGSTT+ S+F  T NPW +S VP             R C ++LGSDTG
Sbjct:   17 ESSATAIAKYFYNRIKTEDNQIGAFLSLCEERAYEKAAIIDAKVARGEPLGKLAGVPIGIKDNIHIRGLRTTCASKMLENYIAPFDATVVERIEAEDGVILGKLNMDEFAMGSTTQYSAFHPTKNPWGLSCVPGGSSGGSAAAVSARFCPIALGSDTG 174          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_SALTO (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=gatA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 62/158 (39.24%), Postives = 102/158 (64.56%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            E +A ++ + +L R+   + ++ +F+HV +   L  A+ +D +    E +GPLAGV V VKD + T  +P+TAGS++L ++RPP+D+T V++++    +++GKTN+DEF MGS+TE S+F  T NPWD+SR+P              +  +S+GSDTG
Sbjct:   20 ESSAVEVTQAHLDRISAVDDRVHAFLHVDTEGALDAARDVDSRRAAGEPLGPLAGVPVAVKDVLTTKGVPTTAGSKILADWRPPYDSTIVRRLRAAGTVMLGKTNMDEFAMGSSTEYSAFGPTHNPWDLSRIPGGSGGGSSAALAAYETPLSIGSDTG 177          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_SALAI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Salinispora arenicola (strain CNS-205) GN=gatA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 63/158 (39.87%), Postives = 102/158 (64.56%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            E +A ++ + +L R+   + ++ +F+HV +   L  A+++D +    E +GPLAGV V VKD + T  +P+TAGSR+L  +RPP+D+T V++++    +++GKTN+DEF MGS+TE S+F  T NPWD+SR+P              +  +S+GSDTG
Sbjct:   20 ESSAAEVTQAHLDRITAVDDRVHAFLHVDTEGALDAARAVDARRAAGEPLGPLAGVPVAVKDVLTTKGIPTTAGSRILAGWRPPYDSTIVRRLRAAGTVMLGKTNMDEFAMGSSTEYSAFGPTHNPWDLSRIPGGSGGGSAAALAAYETPLSIGSDTG 177          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_PERMH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=gatA PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.989e-30
Identity = 63/159 (39.62%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFI-HVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +EV  +++ E++  R K  E ++KS++  ++   ++ A+ +D+KI     +  L G+ + +KDNI T  + +T  S++LENY PPFDAT +K++K+ + ++ GKTNLDEF MGS+TE+S+F VT NPWD+ RVP                  +LGSDTG
Sbjct:   18 KEVKPSEVIESFAQRTKDVEVKIKSYVTDLTEQAVERAKQLDEKISDLSEIPELFGIPIAIKDNISTEGIRTTCSSKILENYVPPFDATVIKRLKDKEYVITGKTNLDEFAMGSSTENSAFFVTRNPWDLDRVPGGSSGGSAAAVSAGLAPAALGSDTG 176          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_DESAA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfatibacillum alkenivorans (strain AK-01) GN=gatA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.043e-29
Identity = 60/158 (37.97%), Postives = 95/158 (60.13%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E+++  L +  L R++  EPQ+ +++ VS     EA    DK        PL G+ + +KD +CT  + +T  S++L N+ PP+DAT++ K+KE   ++VGKTN+DEF MGS+TE+S+F+ T NPWD++R P               C+ + GSDTG
Sbjct:   18 KEISSQDLTKAVLDRIEAVEPQVDAYLTVSKEEAMEAAQKADKALAQGETAPLCGIPLAIKDVMCTKGVLTTCASKILGNFVPPYDATSITKLKEAGAVLVGKTNMDEFAMGSSTENSAFKTTKNPWDLTRTPGGSSGGSAAAVAADMCLGAFGSDTG 175          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_SYNP2 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=gatA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.363e-29
Identity = 60/159 (37.74%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNN-VLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E +A ++     + ++  EP++K+F+ ++    L +A  +D KI   E +G L G+ + +KDN+CT  + +T  SR+LE + P +++T  ++++E   I+VGKTNLDEF MGS+TE+S +QVT NPWD++RVP              +  ++LGSDTG
Sbjct:   14 KERSAVEILTETFAHIEAVEPKVKAFLTLTKEQALAQAAQVDAKIAAGETIGLLEGIPIAIKDNLCTKGIQTTCASRILEGFVPTYESTVTQELQEAGAIMVGKTNLDEFAMGSSTENSGYQVTGNPWDVTRVPGGSSGGSAAAVAAGEAPIALGSDTG 172          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_PROMT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain NATL2A) GN=gatA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.363e-29
Identity = 61/158 (38.61%), Postives = 102/158 (64.56%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            EV++ +L +  ++R+   +P L SF+ V+  + L +A+ ID +I   +++ PL+G+ + +KDN+CT  + +T  S++L+N+ PP+++T  KK+     I++GKTN+DEF MGS+TE+S+F  T NPW+I++VP               C  SLGSDTG
Sbjct:   14 EVSSKELVQEKINRINELDPTLNSFLIVNTELALSKAEHIDKQIASGDHLPPLSGIPIAIKDNLCTKGIKTTCASKILDNFVPPYESTVTKKLLNAGAIMIGKTNMDEFAMGSSTETSAFGPTLNPWNITKVPGGSSGGSAASVAAGLCYGSLGSDTG 171          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_PROM1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain NATL1A) GN=gatA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.363e-29
Identity = 61/158 (38.61%), Postives = 102/158 (64.56%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            EV++ +L +  ++R+   +P L SF+ V+  + L +A+ ID +I   +++ PL+G+ + +KDN+CT  + +T  S++L+N+ PP+++T  KK+     I++GKTN+DEF MGS+TE+S+F  T NPW+I++VP               C  SLGSDTG
Sbjct:   14 EVSSKELVQEKINRINELDPTLNSFLIVNTELALSKAEHIDKQIASGDHLPPLSGIPIAIKDNLCTKGIKTTCASKILDNFVPPYESTVTKKLLNAGAIMIGKTNMDEFAMGSSTETSAFGPTLNPWNITKVPGGSSGGSAASVAAGLCYGSLGSDTG 171          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CLOBA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=gatA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.363e-29
Identity = 56/159 (35.22%), Postives = 104/159 (65.41%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNN-VLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +EV+  ++ + +L  +K  + ++ +F++++    L +A+++D+K+ + E++G L G  +G+KDNI   +M +T  S++LE Y  P+DAT  + VK   G+++GK N+DEF MGS+TE+S++++T NPWD+ RVP             ++  ++LG+DTG
Sbjct:   18 KEVSVEEVTKAHLENVKNIDAKVNAFLYIAEEEALNDAKALDEKLSKGEDIGLLGGAPLGIKDNISVKNMQNTCASKILEGYISPYDATVSESVKSQGGVILGKLNMDEFAMGSSTENSAYKITRNPWDLDRVPGGSSGGSAAAVASKEVPLALGTDTG 176          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_ALKMQ (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Alkaliphilus metalliredigens (strain QYMF) GN=gatA PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.363e-29
Identity = 60/159 (37.74%), Postives = 101/159 (63.52%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++ T   + + Y+ R+K  + ++ +FI +   + L EA  +D+K+ R E +G L G+ V +KDN+CT  + ++  S +L ++ PP+DAT VKK++    I++GKTN+DEF MGS+TE+S+F+VT NPWD+++VP                 +++GSDTG
Sbjct:   18 KQFTVKDVVQGYIDRIKELDGKINAFITLCEESALMEAAVLDEKLSRGEEIGLLGGIPVAIKDNMCTQGIKTSCASEMLADFIPPYDATIVKKLRAAGAIIIGKTNMDEFAMGSSTENSAFKVTKNPWDLTKVPGGSSGGSAAALAAGFAPLTIGSDTG 176          
The following BLAST results are available for this feature:
BLAST of FC920234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_CHLAB4.684e-3041.77Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_SALTO7.989e-3039.24Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SALAI7.989e-3039.87Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PERMH7.989e-3039.62Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_DESAA1.043e-2937.97Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_SYNP21.363e-2937.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PROMT1.363e-2938.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PROM11.363e-2938.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_CLOBA1.363e-2935.22Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_ALKMQ1.363e-2937.74Glutamyl-tRNA(Gln) amidotransferase subunit A OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC32005F10EF RVDevelop1 Citrus clementina cDNA clone C32005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920234 ID=FC920234; Name=FC920234; organism=Citrus clementina; type=EST; length=697bp
GGAGACTCTCTGGAAGCGGGGATCGAGATACAAAAGCAATGCTGTCGACT
CTCCACCATCCTCCGCGGAGGCTCTCTCGGTTCTTCCCAGCCAATAATAA
ACCCCGCCATTTTCACGCAAAACCCGTTCTCTCTTCCTCACAGCCCGTCA
CCGACCAATCGCCTTCCTCTACGTCACCGCCCGAATCCCAAATCCTCTCC
ATCCATCACTCCCTCCTCTCCCGCGAGGTCACCGCCACCCAGCTCGCCGA
AACCTACCTATCCCGTCTTAAGCTCGCCGAACCGCAACTCAAGTCCTTCA
TCCACGTCTCCAACAATGTGCTAAAAGAAGCACAATCCATCGATGATAAG
ATCAAGAGAAACGAAAACGTGGGGCCCCTTGCTGGGGTTTTGGTTGGGGT
TAAAGATAATATATGTACGGTGGATATGCCGTCTACGGCTGGCTCTAGAG
TCTTGGAGAATTATCGTCCGCCTTTCGATGCCACTGCGGTTAAGAAAGTG
AAGGAATTTGATGGGATTGTGGTGGGTAAGACCAATTTGGATGAGTTTGG
GATGGGCAGCACCACTGAATCTTCTTCTTTTCAGGTGACTGCAAATCCTT
GGGATATTTCTCGGGTGCCAGGAGGATCATCGGGAGGCTCAGCTGCAGCT
GTTTCTGCTAGGCAGTGCGTAGTGTCTCTGGGGAGTGATACTGGTGG
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