FC920234

Overview
NameFC920234
Unique NameFC920234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14103 contig Ccv1_Contig14103:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_BDEBA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bdellovibrio bacteriovorus GN=gatA PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.780e-29
Identity = 63/158 (39.87%), Postives = 99/158 (62.66%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            R ++A ++   +L R++   P+L +F  ++   ++EA+++D +I   E+VG LAGV  G+K+  CT  + +TAGS++LEN+ PP+DATAV ++K+   +V+GK N DEF MGS+ E+S   V  NPWD+ RVP             R    +LG+DTG
Sbjct:   18 RSISAKEVTLHFLKRIENLNPKLNAFTSLNPQAVQEAEAVDARIANGEDVGLLAGVPFGIKEMFCTKGLTTTAGSKILENFVPPYDATAVARLKKSGIVVMGKLNQDEFAMGSSNETSFHGVVKNPWDLERVPGGSSGGSAAAQASRLVAGTLGTDTG 175          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_THETN (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermoanaerobacter tengcongensis GN=gatA PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.036e-29
Identity = 61/158 (38.61%), Postives = 99/158 (62.66%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            REV+A ++ ++YL R+K  EP++ + + ++     E   + D++ +N     L G+ V +KDNI T  + +T  S++LENY PP++AT V+++     +++GK+NLDEF MGS+TE+S+F+ T NPWD+SRVP              +   +LGSDTG
Sbjct:   18 REVSAQEVTKSYLERIKEVEPKIDALVTITEEFALERAKVADEMIKNGEAKDLTGIPVIIKDNISTEGIRTTCSSKMLENYIPPYNATVVERLLNEGVVILGKSNLDEFAMGSSTENSAFKTTKNPWDLSRVPGGSSGGSAAAVAADEAAFALGSDTG 175          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_SYNS9 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain CC9902) GN=gatA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.965e-29
Identity = 60/158 (37.97%), Postives = 99/158 (62.66%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++++ +L + ++ RL+ AEP L  +  ++      +A  ID      E++GPLAG+ + +KDN+CT  + +T  SR+LE++ PP+++TA +++ +  G++VGKTNLDEF MG +TE+S+F  T NPW++  VP               C+ SLGSDTG
Sbjct:   19 DISSRELVDQHIERLETAEPSLSVYNEITVERARADADRIDAARAAGESLGPLAGLPLAIKDNLCTRGVRTTCSSRMLEHFVPPYESTATERLWQAGGVLVGKTNLDEFAMGGSTETSAFGATHNPWNLDHVPGGSSGGSAAAVASGSCIASLGSDTG 176          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_FRASC (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Frankia sp. (strain CcI3) GN=gatA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.965e-29
Identity = 61/157 (38.85%), Postives = 98/157 (62.42%), Query Frame = 3
Query:  228 VTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++A +     L R+   +  + +F+HV ++  L  A+S+DD+    E +GPLAGV + +KD   T  MP+T GSR+LE + PP+DAT V +++  D +++GK N+DEF MGS+TE+S+F  T NPWD++R+P              +  ++LG+DTG
Sbjct:   34 LSAVEATRAALDRIAKVDETVHAFLHVDADGALAAARSVDDRRAAGERLGPLAGVPLALKDVFTTRGMPTTCGSRILEGWHPPYDATVVSRLRAADVVLLGKANMDEFAMGSSTENSAFGPTRNPWDVTRIPGGSSGGSAAAVAAFEAPLALGTDTG 190          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_CLOBB (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=gatA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.965e-29
Identity = 55/159 (34.59%), Postives = 103/159 (64.78%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNN-VLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E +  ++ + +L  +K  + ++ +F++++    L +A+++D+K+ + E++G L G  +G+KDNI   +M +T  S++LE Y  P+DAT  + VK   G+++GK N+DEF MGS+TE+S++++T NPWD+ RVP             ++  ++LG+DTG
Sbjct:   18 KEASVEEVTKAHLENVKNIDEKVNAFLYIAEEEALNDAKALDEKLSKGEDIGLLGGAPLGIKDNISVKNMQNTCASKILEGYISPYDATVSESVKSQGGVILGKLNMDEFAMGSSTENSAYKITRNPWDLDRVPGGSSGGSAAAVASKEVPLALGTDTG 176          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_TROWT (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Tropheryma whipplei (strain Twist) GN=gatA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.763e-29
Identity = 59/159 (37.11%), Postives = 105/159 (66.04%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKE-AQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +EV+A ++AE+++  ++ ++ ++ +F++   +  ++ A+ +D+++K    + PLAGV + VKD I T DMP+TAGS++LE + PP++AT ++++      ++GKTN DEFGMGS+TE S+++ T NPWD+SR                Q  ++LG+DTG
Sbjct:   48 KEVSALEVAESFIDNIEASDSRICAFLYTDFSYTRDVARRVDEELKSATKLSPLAGVPIAVKDMILTRDMPTTAGSKILEGWIPPYNATVIERISRARMPILGKTNQDEFGMGSSTEYSAYKTTRNPWDLSRTAGGSGGGSSAAVSASQAPLALGTDTG 206          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_TROW8 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Tropheryma whipplei (strain TW08/27) GN=gatA PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 6.763e-29
Identity = 59/159 (37.11%), Postives = 105/159 (66.04%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKE-AQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +EV+A ++AE+++  ++ ++ ++ +F++   +  ++ A+ +D+++K    + PLAGV + VKD I T DMP+TAGS++LE + PP++AT ++++      ++GKTN DEFGMGS+TE S+++ T NPWD+SR                Q  ++LG+DTG
Sbjct:   48 KEVSALEVAESFIDNIEASDSRICAFLYTDFSYTRDVARRVDEELKSATKLSPLAGVPIAVKDMILTRDMPTTAGSKILEGWIPPYNATVIERISRARMPILGKTNQDEFGMGSSTEYSAYKTTRNPWDLSRTAGGSGGGSSAAVSASQAPLALGTDTG 206          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_THEFY (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Thermobifida fusca (strain YX) GN=gatA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.763e-29
Identity = 61/158 (38.61%), Postives = 100/158 (63.29%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            E +A +  + YL R+   + Q+ +F+HV+ +  L++A+++D +    E +GPLAGV V  KD   T DMP+TA S++LE ++ P+DAT  +++++   +++GKTNLDEF MGS+TE+S++  T NPWD  RVP              +  ++ G+DTG
Sbjct:   20 ETSAVEATQAYLDRIAEVDGQIHAFLHVAADKALEQARAVDARRAAGEKLGPLAGVPVAHKDVFTTKDMPTTAASKILEGWQSPYDATVTERLRDAGLVILGKTNLDEFAMGSSTENSAYGPTRNPWDTDRVPGGSSGGSSAAVAAFEAPLATGTDTG 177          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_MOOTA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Moorella thermoacetica (strain ATCC 39073) GN=gatA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.154e-28
Identity = 59/159 (37.11%), Postives = 101/159 (63.52%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFI-HVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E+++ +     + R++  + ++++++   +   L+EA+++D    R E +GPLAGV + +KDN+CT  + +T  SR+L ++ PP+DAT V+++KE   +++GK N+DEF MGS+TE+SSF  T NPWD+ RVP              +   +LGSDTG
Sbjct:   18 KEISSEEATAAIIDRIEAVDGRVQAYLTRTAEQALEEARAVDAARARGETLGPLAGVPMALKDNLCTEGVRTTCSSRMLADWVPPYDATVVRRLKEAGAVMLGKLNMDEFAMGSSTENSSFFPTRNPWDLERVPGGSSGGAVAAVAAGEAYFALGSDTG 176          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_DESAH (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=gatA PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.154e-28
Identity = 64/158 (40.51%), Postives = 98/158 (62.03%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            E+++  L    L R+K  +  L +FI V +   L+ A + D++I R E+  PL G+ + +KD +CT  + +T  S++LEN+ P +DATAV  +K+   ++VGKTNLDEFGMGS+TE+S+F +T NPW++  VP             R C  +LG+DTG
Sbjct:   19 EISSKDLTTCLLDRIKTHDADLGAFITVDAAGALEAATAADERIARGEDA-PLLGIPLALKDLLCTSGVRTTCASKILENFVPTYDATAVTLLKQAGAVIVGKTNLDEFGMGSSTENSAFHLTRNPWNLDHVPGGSSGGSAAAVAARMCTAALGTDTG 175          
The following BLAST results are available for this feature:
BLAST of FC920234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_BDEBA1.780e-2939.87Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_THETN3.036e-2938.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_SYNS93.965e-2937.97Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_FRASC3.965e-2938.85Glutamyl-tRNA(Gln) amidotransferase subunit A OS=F... [more]
GATA_CLOBB3.965e-2934.59Glutamyl-tRNA(Gln) amidotransferase subunit A OS=C... [more]
GATA_TROWT6.763e-2937.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_TROW86.763e-2937.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_THEFY6.763e-2938.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=T... [more]
GATA_MOOTA1.154e-2837.11Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_DESAH1.154e-2840.51Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]

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Properties
Property NameValue
Genbank descriptionC32005F10EF RVDevelop1 Citrus clementina cDNA clone C32005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920234 ID=FC920234; Name=FC920234; organism=Citrus clementina; type=EST; length=697bp
GGAGACTCTCTGGAAGCGGGGATCGAGATACAAAAGCAATGCTGTCGACT
CTCCACCATCCTCCGCGGAGGCTCTCTCGGTTCTTCCCAGCCAATAATAA
ACCCCGCCATTTTCACGCAAAACCCGTTCTCTCTTCCTCACAGCCCGTCA
CCGACCAATCGCCTTCCTCTACGTCACCGCCCGAATCCCAAATCCTCTCC
ATCCATCACTCCCTCCTCTCCCGCGAGGTCACCGCCACCCAGCTCGCCGA
AACCTACCTATCCCGTCTTAAGCTCGCCGAACCGCAACTCAAGTCCTTCA
TCCACGTCTCCAACAATGTGCTAAAAGAAGCACAATCCATCGATGATAAG
ATCAAGAGAAACGAAAACGTGGGGCCCCTTGCTGGGGTTTTGGTTGGGGT
TAAAGATAATATATGTACGGTGGATATGCCGTCTACGGCTGGCTCTAGAG
TCTTGGAGAATTATCGTCCGCCTTTCGATGCCACTGCGGTTAAGAAAGTG
AAGGAATTTGATGGGATTGTGGTGGGTAAGACCAATTTGGATGAGTTTGG
GATGGGCAGCACCACTGAATCTTCTTCTTTTCAGGTGACTGCAAATCCTT
GGGATATTTCTCGGGTGCCAGGAGGATCATCGGGAGGCTCAGCTGCAGCT
GTTTCTGCTAGGCAGTGCGTAGTGTCTCTGGGGAGTGATACTGGTGG
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