FC920234

Overview
NameFC920234
Unique NameFC920234
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14103 contig Ccv1_Contig14103:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_BIFLI (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=gatA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.725e-28
Identity = 65/159 (40.88%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGP-LAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +VT+ +L E +L  ++ AEP +K+F+ VS +V L++A + D K   ++   P LAGV + +KD I T  + +TA S++LE + PP+DAT ++K+K     ++GKTNLDEF  GS+TE S++Q T NPWD  RVP              +  ++LG+DTG
Sbjct:   24 DVTSRELVEAHLKVIEAAEPSIKAFLKVSGDVALEQADAFDAKSAEDKAALPELAGVPIAIKDMIVTKGIETTAASKILEGWVPPYDATVIEKLKAAGMPILGKTNLDEFAQGSSTEHSAYQTTHNPWDTERVPGGSGGGSASAVAAFEAPIALGTDTG 182          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_BIFLD (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Bifidobacterium longum (strain DJO10A) GN=gatA PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.725e-28
Identity = 65/159 (40.88%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVSNNV-LKEAQSIDDKIKRNENVGP-LAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +VT+ +L E +L  ++ AEP +K+F+ VS +V L++A + D K   ++   P LAGV + +KD I T  + +TA S++LE + PP+DAT ++K+K     ++GKTNLDEF  GS+TE S++Q T NPWD  RVP              +  ++LG+DTG
Sbjct:   24 DVTSRELVEAHLKVIEAAEPSIKAFLKVSGDVALEQADAFDAKSAEDKAALPELAGVPIAIKDMIVTKGIETTAASKILEGWVPPYDATVIEKLKAAGMPILGKTNLDEFAQGSSTEHSAYQTTHNPWDTERVPGGSGGGSASAVAAFEAPIALGTDTG 182          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_PROMS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain AS9601) GN=gatA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.477e-28
Identity = 61/153 (39.87%), Postives = 95/153 (62.09%), Query Frame = 3
Query:  240 QLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +L   +  ++   + ++ S+I  + +N + +A+ ID  I+ NE + PLAG+ + +KDNICT  + +T  S +L+N+  P+++TA  K+    GI +GKTNLDEF MGS+TE+S F VT+NPWDI+RVP               C  ++GSDTG
Sbjct:   19 ELVNDFFVKIDHKDSKINSYICTTKDNAIAQAEDIDKLIQNNEKLPPLAGMPIAIKDNICTKGVATTCASNMLKNFVAPYESTASSKLWSSGGICLGKTNLDEFAMGSSTETSVFGVTSNPWDINRVPGGSSGGSAASVAAGFCAAAIGSDTG 171          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_PROM0 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9301) GN=gatA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.477e-28
Identity = 61/153 (39.87%), Postives = 96/153 (62.75%), Query Frame = 3
Query:  240 QLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +L     + +   +P++ S+I  + +N + +A++ID  I+  E + PLAG+ + +KDNICT  + +T  S++L+N+  P+++TA  K+    GI +GKTNLDEF MGS+TE+S F VT+NPWDI+RVP               C  ++GSDTG
Sbjct:   19 ELVNDIFTNIDHKDPEINSYICTTKDNAIAQAENIDKLIQFKEKLPPLAGMPIAIKDNICTKGVATTCASKMLKNFVAPYESTASSKLWSSGGICLGKTNLDEFAMGSSTETSLFGVTSNPWDINRVPGGSSGGSAASVAAGFCAAAIGSDTG 171          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_METMA (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Methanosarcina mazei GN=gatA PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.477e-28
Identity = 61/158 (38.61%), Postives = 98/158 (62.03%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVSNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E +A ++   YL  +K  + ++  ++ +S+  L++A+ ID    +  + GPLAGV + +KDNI  V +P++ GS++LE Y PPF+A  ++K+     +++GKTN+DEF MGS+TE+S F  TANPWD+ RVP              +   +LGSDTG
Sbjct:   16 KESSAEEVTSRYLEVIK--KSKINGYLTISDKALEQAKKID----KEGHEGPLAGVPIAIKDNISVVGLPNSCGSKILEGYVPPFNAHVIEKLLSAGAVILGKTNMDEFAMGSSTETSHFGPTANPWDLERVPGGSSGGSAAVVAAGEAPFALGSDTG 167          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_SYNFM (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=gatA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 62/159 (38.99%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHV-SNNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            +E++ T+   ++L+R++  +P+L S++ V + + L EA   D + +R+ +  PLAG+ + +KD +C     +T GSR+LEN+ PP+D T + +++E   I +GKTN+DEF MGS+TE+S++ VT NPWD  RVP               C  SLG+DTG
Sbjct:   18 KELSVTETLTSFLTRIETLDPRLNSYLSVLAESSLAEAGRFD-RGERDLHASPLAGIPLAIKDVLCMQGTVTTCGSRILENFVPPYDGTVIARLREAGAIFLGKTNMDEFAMGSSTENSAYGVTRNPWDRERVPGGSSGGSAAAVAADLCSGSLGTDTG 175          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_DEHE1 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Dehalococcoides ethenogenes (strain 195) GN=gatA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.766e-28
Identity = 61/159 (38.36%), Postives = 103/159 (64.78%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            R++++ +L   +L R++  EP++K+F+ V   + L +A++ D+ IK+  ++ PL G+ + +KD +CT  + +T  SR+LEN+ PP++A  V K+ E   +++GKTN+DEF MGS+TE+S+F  T NPW+ ++VP              + V SLGSDTG
Sbjct:   19 RKLSSAELTRAHLDRIEKLEPEIKAFMTVCPESALAQAKAADEAIKQG-HIRPLTGIPMALKDVLCTKGIRTTCSSRMLENFVPPYNAHVVDKLAEEGAVLLGKTNMDEFAMGSSTENSAFFTTHNPWNTAKVPGGSSGGSAACVAASEAVFSLGSDTG 176          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_SYNPW (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Synechococcus sp. (strain WH7803) GN=gatA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.275e-27
Identity = 58/158 (36.71%), Postives = 98/158 (62.03%), Query Frame = 3
Query:  225 EVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            EV+A +L + +L+R++  EP + +F+ V+      +A  +D+     E++ PLAG+ + +KDN+CT  + +T  SR+LE + PP+++T  +++     +++GKTNLDEF MG +TE+S+F  TANPW+   VP              +C+ S+GSDTG
Sbjct:   14 EVSARELTDHHLARIEAVEPGIHAFLEVTAERARADADRVDEARASGEDLPPLAGIPLAIKDNLCTRGVRTTCSSRMLEQFVPPYESTVTERLWAAGAVLLGKTNLDEFAMGGSTETSAFGPTANPWNPEHVPGGSSGGSAAAVASGECLASIGSDTG 171          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_SYNAS (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Syntrophus aciditrophicus (strain SB) GN=gatA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.275e-27
Identity = 61/157 (38.85%), Postives = 94/157 (59.87%), Query Frame = 3
Query:  228 VTATQLAETYLSRLKLAEPQLKSFIHVSN-NVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            VT+T +  +   R+   E  + S+I +   + L+EAQ  D++I+  E +  L G+ V +KD  CT  + +T GS +L+N+ PP+DAT V K++E   +  GKTN+DEF MGS+TE+S +  T NPWD+ R+P              +C+ +LGSDTG
Sbjct:   20 VTSTAIVNSVFGRIDAVEENVHSYITLMRESALEEAQKADEQIRTGE-INALTGIPVALKDIYCTRGVRTTCGSLILDNFIPPYDATVVVKLREAGAVFTGKTNMDEFAMGSSTETSYYGFTRNPWDLERIPGGSSGGSAAAVAADECIAALGSDTG 175          
BLAST of FC920234 vs. ExPASy Swiss-Prot
Match: GATA_PROM9 (Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Prochlorococcus marinus (strain MIT 9312) GN=gatA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.275e-27
Identity = 61/159 (38.36%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  222 REVTATQLAETYLSRLKLAEPQLKSFIHVS-NNVLKEAQSIDDKIKRNENVGPLAGVLVGVKDNICTVDMPSTAGSRVLENYRPPFDATAVKKVKEFDGIVVGKTNLDEFGMGSTTESSSFQVTANPWDISRVPXXXXXXXXXXXXXRQCVVSLGSDTG 695
            ++ +  +L      ++   +P++ S+I  + +N +++A++ID  I+  E + PLAG+ + +KDNICT  + +T  S++L+ +  P+++TA  K+    GI +GKTNLDEF MGS+TE+S F VT+NPWDISRVP               C  ++GSDTG
Sbjct:   13 KKASVKELVNDIFLKIDSDDPEINSYICTTKDNAIQQAENIDKLIQNEEILPPLAGMPIAIKDNICTKGVHTTCASKMLKGFIAPYESTASDKLWSSGGICLGKTNLDEFAMGSSTETSVFGVTSNPWDISRVPGGSSGGSAASVAAGLCSAAIGSDTG 171          
The following BLAST results are available for this feature:
BLAST of FC920234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GATA_BIFLI5.725e-2840.88Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_BIFLD5.725e-2840.88Glutamyl-tRNA(Gln) amidotransferase subunit A OS=B... [more]
GATA_PROMS7.477e-2839.87Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_PROM07.477e-2839.87Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]
GATA_METMA7.477e-2838.61Glutamyl-tRNA(Gln) amidotransferase subunit A OS=M... [more]
GATA_SYNFM9.766e-2838.99Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_DEHE19.766e-2838.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=D... [more]
GATA_SYNPW1.275e-2736.71Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_SYNAS1.275e-2738.85Glutamyl-tRNA(Gln) amidotransferase subunit A OS=S... [more]
GATA_PROM91.275e-2738.36Glutamyl-tRNA(Gln) amidotransferase subunit A OS=P... [more]

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Properties
Property NameValue
Genbank descriptionC32005F10EF RVDevelop1 Citrus clementina cDNA clone C32005F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920234 ID=FC920234; Name=FC920234; organism=Citrus clementina; type=EST; length=697bp
GGAGACTCTCTGGAAGCGGGGATCGAGATACAAAAGCAATGCTGTCGACT
CTCCACCATCCTCCGCGGAGGCTCTCTCGGTTCTTCCCAGCCAATAATAA
ACCCCGCCATTTTCACGCAAAACCCGTTCTCTCTTCCTCACAGCCCGTCA
CCGACCAATCGCCTTCCTCTACGTCACCGCCCGAATCCCAAATCCTCTCC
ATCCATCACTCCCTCCTCTCCCGCGAGGTCACCGCCACCCAGCTCGCCGA
AACCTACCTATCCCGTCTTAAGCTCGCCGAACCGCAACTCAAGTCCTTCA
TCCACGTCTCCAACAATGTGCTAAAAGAAGCACAATCCATCGATGATAAG
ATCAAGAGAAACGAAAACGTGGGGCCCCTTGCTGGGGTTTTGGTTGGGGT
TAAAGATAATATATGTACGGTGGATATGCCGTCTACGGCTGGCTCTAGAG
TCTTGGAGAATTATCGTCCGCCTTTCGATGCCACTGCGGTTAAGAAAGTG
AAGGAATTTGATGGGATTGTGGTGGGTAAGACCAATTTGGATGAGTTTGG
GATGGGCAGCACCACTGAATCTTCTTCTTTTCAGGTGACTGCAAATCCTT
GGGATATTTCTCGGGTGCCAGGAGGATCATCGGGAGGCTCAGCTGCAGCT
GTTTCTGCTAGGCAGTGCGTAGTGTCTCTGGGGAGTGATACTGGTGG
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