FC920235

Overview
NameFC920235
Unique NameFC920235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:26..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.398e-19
Identity = 65/201 (32.34%), Postives = 90/201 (44.78%), Query Frame = 1
Query:   52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654
            K   PR GSL F PRKRA     K K++P+   +    L  F GYK GMTH++   +   S    KE    VTIIE           Y K   G  +L  +WA+ L  ++ RR                   Y++   KK     L       + +  LA+TQ   M G+ +K   LMEI+V GG IA++ +YA+G   K+
Sbjct:    3 KINRPRRGSLAFSPRKRAQSPIPKYKSWPEHSGAPA--LLGFAGYKVGMTHVLMVDDHKDSPTEGKEIMVPVTIIEIPTMKVAALRVYTKDTYGKHALTEIWAEPLDSQLSRR-------------VTSPKNYDSTAAKKKYSDAL--AAGLVAEIYALAYTQPATMSGVPKKVPDLMEIKVAGGDIAKQYEYAFGLLGKE 186          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METVS (50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 66/194 (34.02%), Postives = 97/194 (50.00%), Query Frame = 1
Query:   52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ET          Y KT +GL++L  VWA+   +E+ R+                  + E  +  +S+ A LEK       +RV+ HT   K  G+ +KK  ++EI+V G ++AEK+ YA
Sbjct:    4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL--------------TVTKKEEIKTVESLDAVLEKTVD----LRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYA 175          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.357e-19
Identity = 66/194 (34.02%), Postives = 97/194 (50.00%), Query Frame = 1
Query:   52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633
            K   PR GSL F PRKRA +   K++++P D   K   L AF  YKAG TH +     P S  + +E    VT++ET          Y KT +GL++L  VWA+   +E+ R+                  + E  +  +S+ A LEK       +RV+ HT   K  G+ +KK  ++EI+V G ++AEK+ YA
Sbjct:    4 KKNRPRRGSLAFSPRKRAKKLVPKIRSWPAD---KKVGLQAFPVYKAGTTHALLVENNPKSPNNGQEVFSPVTVLETPEITVAGIRAYGKTTKGLKALTEVWAKQQDKELGRKL--------------TVTKKEEIKTVESLDAVLEKTVD----LRVIVHTN-PKTTGIPKKKPEVVEIRVGGSSVAEKLAYA 175          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.147e-18
Identity = 63/195 (32.31%), Postives = 94/195 (48.21%), Query Frame = 1
Query:   52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPK-DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633
            +   PR GS+ F PRKRAAR   +VK++P+ D+P     L A  GYKAGMTH++    +  S     E    VTI+E           Y KT RGL++L  V A    +++RR+                   Y+ +   + I++ +E    Y + VRV+ HT  R +  + +KK  + E  + G T  EK +YA
Sbjct:    3 RHHQPRKGSVAFSPRKRAARETPRVKSWPQVDEPG----LLALAGYKAGMTHVMMVDNQKNSPTEGMEVSTPVTILEVPPLTVMAVRTYEKTSRGLKTLGEVLATETKDDLRRKL------------TPPADDYDQEAAIEKIRSNME----YVADVRVIVHTNPR-LASVPKKKPEVFECGLGGKTPEEKFEYA 176          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.239e-18
Identity = 58/190 (30.53%), Postives = 95/190 (50.00%), Query Frame = 1
Query:   64 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633
            PR GS+GF PR RAA    +  ++P DD  +P  L  F GYKAGM+H+V   ++P S    +E    VT++ET          Y  TP G R L  VW   + E++ R                   + ++ + +  I+  L+  +   + VRV+ HT    +  + +K+  +ME +V GG+++++VD+A
Sbjct:    7 PRKGSMGFSPRSRAASEVPRFNSWP-DDEGQP-GLQGFAGYKAGMSHVVAINDEPNSPREGQEETVPVTVVETPPMRAVAVRAYEDTPYGKRPLTEVWTDEVHEDLERSL--------------SVPEEQSGDIEGDIRTALD--EGALADVRVITHTVPGALSSVPKKEPDVMETRVGGGSLSDRVDFA 178          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 64/198 (32.32%), Postives = 97/198 (48.99%), Query Frame = 1
Query:   64 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG-LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654
            PR GSL F PRKRA R   +++++P++D     RL AF  YKAGM+H     + P S    +E    +TI+E           Y +  R  L +L  VWA +L +E+ R+                  +    E +K+++  LE +K     VRVL HT   K+  L +KK  ++EI++ G  I E+++YA     KQ
Sbjct:    8 PRRGSLAFSPRKRAKRPVPRIRSWPEED---TVRLQAFPVYKAGMSHAFIKEDNPKSPNAGQEVFTPITILEAPPINVCAIRVYGRNERNYLTTLTEVWADNLDKELERKI-----------------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTN-PKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILGKQ 183          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 60/195 (30.77%), Postives = 87/195 (44.62%), Query Frame = 1
Query:   64 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFE 648
            PR GS+GF PRKRA     +  ++P DD      L  F GYKAGMTH+V   +K  +     ET   VT++ET          Y  TP G + L  VWA    E + R                       DEG  + +       +  + +RV+ HT      G+ +K   +ME +V GGT+A+++++A    E
Sbjct:    7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFAADLIE 181          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 60/195 (30.77%), Postives = 87/195 (44.62%), Query Frame = 1
Query:   64 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFE 648
            PR GS+GF PRKRA     +  ++P DD      L  F GYKAGMTH+V   +K  +     ET   VT++ET          Y  TP G + L  VWA    E + R                       DEG  + +       +  + +RV+ HT      G+ +K   +ME +V GGT+A+++++A    E
Sbjct:    7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTEGMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDRTL------------------SVPDEGGDTDELIEALDTEEIADIRVITHTVPGDTAGVPKKNPDVMETRVGGGTLADRLEFAADLIE 181          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.058e-17
Identity = 60/201 (29.85%), Postives = 96/201 (47.76%), Query Frame = 1
Query:   52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654
            K+  PR GSL F PRKRA     +++A+P+ D     R+  F GYKAGMTH+V   ++  S  + +E    VT+IET          Y KT  G++    VW+ +L + + RR                       + +  ++     ++  AS VRV+ +TQ   + G+ +K   +ME ++ GG + E +DYA     K+
Sbjct:    2 KYHRPRRGSLAFSPRKRAKSIVPRIRAWPECDR---VRMQGFAGYKAGMTHVVMIDDRKNSPTYGEEVVVPVTVIETPPMKVAAVRVYKKTQYGMQIAAEVWSNNLDDFLDRRL-------------------NLPKKEPDVEKLKAAVENGASEVRVVTYTQPYLITGVPKKVPDVMEHRI-GGNVEEALDYAISKLGKE 179          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5)

HSP 1 Score: 87.4261 bits (215), Expect = 7.822e-17
Identity = 57/197 (28.93%), Postives = 87/197 (44.16%), Query Frame = 1
Query:   64 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFE 648
            PR GSLGF PRKR+     +  ++P DD     +   F GYKAGMTH+V   ++P S     E    VT+IET          Y  TP G R L  VW      E+ R                       D    + + Q+    +   +  +R++ HT    +  + +KK  +ME +V GG++++++D+A    E
Sbjct:    7 PRKGSLGFGPRKRSTSETPRFNSWPSDDGQPGVQ--GFAGYKAGMTHVVLVNDEPNSPREGMEETVPVTVIETPPMRAVALRAYEDTPYGQRPLTEVWTDEFHSELDRTL-----------------DVPEDHDPDAAEEQIRDAHEAGDLGDLRLITHTVPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVE 184          
The following BLAST results are available for this feature:
BLAST of FC920235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL3_METB66.398e-1932.3450S ribosomal protein L3P OS=Methanoregula boonei ... [more]
RL3_METVS8.357e-1934.0250S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METVA8.357e-1934.0250S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METTH4.147e-1832.3150S ribosomal protein L3P OS=Methanobacterium ther... [more]
RL3_NATPD9.239e-1830.5350S ribosomal protein L3P OS=Natronomonas pharaoni... [more]
RL3_METJA2.058e-1732.3250S ribosomal protein L3P OS=Methanocaldococcus ja... [more]
RL3_HALSA2.058e-1730.7750S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_HALS32.058e-1730.7750S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_ARCFU2.058e-1729.8550S ribosomal protein L3P OS=Archaeoglobus fulgidu... [more]
RL3_HALMA7.822e-1728.9350S ribosomal protein L3P OS=Haloarcula marismortu... [more]

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Properties
Property NameValue
Genbank descriptionC32005F11EF RVDevelop1 Citrus clementina cDNA clone C32005F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920235 ID=FC920235; Name=FC920235; organism=Citrus clementina; type=EST; length=697bp
GAAAACGAGTCAGTCGCCGCAGCAGCTCAGAGGAGGAGAATGTCTCACAG
GAAGTTTGAGCACCCAAGGCATGGTTCCCTTGGATTTCTTCCAAGGAAGC
GAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTTTTCCCAAGGATGACCCA
AGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGTTACAAGGCTGGGATGAC
CCACATTGTTAGGGATGTCGAGAAACCTGGATCTAAGCTTCACAAGAAGG
AGACCTGTGAGGCTGTTACCATTATTGAAACCCCTCCAATGATGGTGGTT
GGAGTTGTGGGATATGTGAAGACACCTCGTGGTCTTCGCTCTTTGAACAC
TGTATGGGCTCAGCATCTTAGTGAGGAGGTGAGAAGAAGGTTCTACAAGA
ACTGGTGCAAATCCAAGAAGAAGGCTTTCACAAAATACTCAAAGCAGTAT
GAAACAGATGAAGGGAAGAAAAGTATCCAAGCTCAGCTGGAGAAGATCAA
GAAGTATGCATCTGTTGTTCGTGTTCTTGCTCACACTCAGATTAGGAAAA
TGAAGGGTTTGAAGCAGAAGAAGGCACACCTGATGGAAATCCAGGTCAAT
GGTGGCACCATTGCTGAAAAAGTTGACTATGCATATGGCTTCTTTGAAAA
GCAATTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGACAT
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