FC920235

Overview
NameFC920235
Unique NameFC920235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig596 contig Ccv1_Contig596:26..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_SULTO (50S ribosomal protein L3P OS=Sulfolobus tokodaii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16
Identity = 61/207 (29.47%), Postives = 101/207 (48.79%), Query Frame = 1
Query:   40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYAS---VVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEK 651
            M HRK   PR GS G  PRKRA+      +++P    ++P +L  F+GYK GM+HI    +KP S  + KE    V++IET          YV  P+G  +  T +   +SE++ +   +               + + D  K+ ++ +L++I    +    +RVL  TQ + +  L +KK  ++E+QV GG I  +++Y      K
Sbjct:    1 MGHRKLASPRRGSAGVRPRKRASEILPTPRSWPTIQSNEP-KLLGFVGYKVGMSHIFMIDDKPTSPNYGKEIYVPVSVIETPPVIPLAIRAYVMGPKGEPTTLTEYWGDISEDLLKLIQQR-----------KVTRLKID--KEKMKGKLDEINNKLNDILYLRVLIATQPKLVPSLGKKKPEIVEVQVGGGDIKSQLNYVLNILGK 193          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16
Identity = 54/197 (27.41%), Postives = 94/197 (47.72%), Query Frame = 1
Query:   64 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654
            PR GSL F PRKRA     +++++  D+ +    +  F GYKAGMTH++   ++P S     E    VT++E           Y     G+R    +WA++LS+++ R                   +       + I+++++++ +    +RVLAHT  R + G+ +K   +MEI V G ++ E++  A G    Q
Sbjct:    7 PRRGSLAFSPRKRAKSEVPRIRSWVADERAG---MAGFAGYKAGMTHVIMIDDRPRSLTEGMEISVPVTVVEVPPMSVAALRVYEPYNGGIRPAGELWAENLSQDLERAI--------------TIPKARRGASLEDIESRVDELCE----IRVLAHTNPRLLTGVPKKVPDIMEIPVTGRSVEEQLKAAEGLLGSQ 182          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METS3 (50S ribosomal protein L3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15
Identity = 60/195 (30.77%), Postives = 92/195 (47.18%), Query Frame = 1
Query:   52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTH-IVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633
            +   PR GS+ F PRKRAA+   ++K++P++D  K   L    GYK GMTH +V D +K  S  +  +    VT++E           Y KT RGL+ +  V A +L EE+ R+                  +Y   E    IQ  L+K +     ++VL HT   K+  + +KK  + E  + G    EK++ A
Sbjct:    3 RHHQPRKGSVAFSPRKRAAKETPRIKSWPQNDEPK---LLGLAGYKVGMTHALVTDSDK-NSPTNGMDVFTPVTVLEVPPVVVMGIRAYEKTSRGLKVITEVLADNLDEELSRKI-------------SLPKEYNKSEAIAKIQGVLDKTED----IKVLVHTN-PKVTSVPKKKPDIFECGIGGANPEEKLNTA 175          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.475e-15
Identity = 66/199 (33.17%), Postives = 90/199 (45.23%), Query Frame = 1
Query:   52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFY---KNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633
            K   PR GSL F PRKRA     ++K +PKD      R+  F GYKAGMTHI+   + PG     KE    VTI+E           Y +   GL +   VW   L++ V+RR     KN+                 +E  K+   QLE +     +  VR+L HTQ   +K   +KK  +ME  + G  +  K +YA
Sbjct:    3 KVHRPRRGSLAFSPRKRARSVVPRIKKWPKD---SEVRMLGFAGYKAGMTHILMIDDSPG-LTKGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHELNDNVKRRIKTLPKNY----------------GEEDFKAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAKFEYA 179          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_SULAC (50S ribosomal protein L3P OS=Sulfolobus acidocaldarius GN=rpl3p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15
Identity = 64/207 (30.92%), Postives = 94/207 (45.41%), Query Frame = 1
Query:   40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG-LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQL-EKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654
            M HRK   PR GS G  PRKRA       K +P  +  +P +L  F+GYKAGMTH+    +KP S  + KE    VTI+E+          Y    +G L  L   WA    EE   ++ K                 + D  K   +  L +K     + +R+L  TQ   +  L +K+  ++EIQ+ GG+I ++++Y      KQ
Sbjct:    1 MGHRKLSSPRRGSAGLRPRKRADEILPTPKNWPLVNLKEP-KLLGFIGYKAGMTHVYMIDDKPTSPNYGKEVYTPVTIVESPPILGLALRAYHIDSKGELSVLVDYWANF--EEGSLKYLKR-----------KITSLKVDSSKMKEKLDLIQKNLNNITYMRLLVSTQPWLVPSLGKKRPEIVEIQIGGGSIQDQLNYGLSLLGKQ 193          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METST (50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15
Identity = 59/203 (29.06%), Postives = 98/203 (48.28%), Query Frame = 1
Query:   52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWA-QHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGK-KSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654
            +   PR GS+ F PRKR AR   +V  +P+ D +    L AF GYK GMTH+     + GS     E    VTI+E           Y KT  GL++L  V A  +L +E+ R+                  +++  E K + ++ +++ I +    +RVL HT+  K+  + +KK  ++E  + G ++ +K++YA     K+
Sbjct:    3 RHHQPRKGSVAFSPRKRVARETPRVSTWPELDEAG---LLAFAGYKVGMTHVTALDSRKGSPTENMELSVPVTILEAPPLVVLGIRAYTKTTYGLKTLTDVIANDNLDDELSRKI--------------SVPKFDDIEAKIEELRNKIDDIDE----IRVLIHTK-PKLTSVPKKKPEVLEFGLGGKSVEDKLEYAISILGKE 183          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_THEON (50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15
Identity = 61/199 (30.65%), Postives = 91/199 (45.73%), Query Frame = 1
Query:   52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYAS-----VVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633
            K   PR GSL + PRKRA     +++ +PKD      R+  F GYKAGMTHI+   ++PG     KE    VT++E           Y +   GL +   VW   L++ V+RR                      D  +++ QA+L +++   +      VR+L HTQ   +K   +KK  +ME  + G  +  K DYA
Sbjct:    3 KIHRPRRGSLAYSPRKRAKSIVPRIRKWPKD---SEVRMLGFAGYKAGMTHILMIDDRPG-LTKGKEIFMPVTVVEVPPLFVYGIRAYRQGYLGLETATEVWFHELNDYVKRRI----------------KTLPKDYNEEAFQAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAKFDYA 179          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_PYRKO (50S ribosomal protein L3P OS=Pyrococcus kodakaraensis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.321e-15
Identity = 66/199 (33.17%), Postives = 90/199 (45.23%), Query Frame = 1
Query:   52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFY---KNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633
            K   PR GSL + PRKRA     +++++PKD      R+  F GYKAGMTHI+   + PG     KE    VTI+E           Y +   GL +   VW   L + V RR     KN+                 +E  ++   QLE +     +  VR+L HTQ   + GLK KK  +ME  + G  +  K DYA
Sbjct:    3 KIHRPRRGSLAYSPRKRAKSIVPRIRSWPKD---SEVRMLGFAGYKAGMTHILMIDDSPG-LTKGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHDLHKNVARRIKTLPKNY----------------NEEAFQAKLGQLEDLVNDGEIADVRLLVHTQ-PWLIGLK-KKPEVMEYAIGGDDVKAKFDYA 179          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METPE (50S ribosomal protein L3P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 57/190 (30.00%), Postives = 86/190 (45.26%), Query Frame = 1
Query:   64 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633
            PR GSL + PRKRA     K  ++P  D  +P  L +F GYK GMTH++   +   S    K+    VTIIE           Y     G R+L  VW + LS  + RR                  +Y  + G K++   +       + +  L +TQ   + G+ +K   LME+ + GGT+ +KV++A
Sbjct:    7 PRRGSLAYSPRKRAKSQVPKYHSWPARD-GEPI-LQSFAGYKVGMTHVIMVDDHKNSPTEGKDIMVPVTIIEIPPMKVAAIRAYTADTYGKRALTEVWTEQLSTLLGRRI-------------TLPKKYSEEAGFKALSEAV--AAGTVTELHALMYTQPDTLTGVPKKVPELMEVCIGGGTLEQKVEFA 179          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_CALMQ (50S ribosomal protein L3P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 62/204 (30.39%), Postives = 97/204 (47.55%), Query Frame = 1
Query:   52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP--RGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQ 654
            K   PR GS+ + PRKRA+    +++ +P  D  KP  L  F+GYKAGM H+    ++  S    KE  +AVT++ET          Y   P    L S+   W  ++  EVR+   +               +++TD+    +Q  L+ +    S ++V+A TQ  K  G+ +K   ++EI V G  TI E+  YA G   K+
Sbjct:    4 KIHRPRRGSMAYYPRKRASDIVPRIRNWPVIDLGKPT-LLGFVGYKAGMVHVTVVDDRKTSPFFGKELVKAVTVVETPPLYVVGLRAYAINPLKAELVSVGEAWV-NIPNEVRKYIARR--------IPTLPEKFDTDKALADLQGLLDSV----SYIKVIAMTQPYK-AGVGKKTPEVLEIPVGGVPTIDEQFKYASGLLGKE 192          
The following BLAST results are available for this feature:
BLAST of FC920235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL3_SULTO1.742e-1629.4750S ribosomal protein L3P OS=Sulfolobus tokodaii G... [more]
RL3_METTP8.648e-1627.4150S ribosomal protein L3P OS=Methanosaeta thermoph... [more]
RL3_METS31.129e-1530.7750S ribosomal protein L3P OS=Methanobrevibacter sm... [more]
RL3_THEGJ1.475e-1533.1750S ribosomal protein L3P OS=Thermococcus gammatol... [more]
RL3_SULAC1.927e-1530.9250S ribosomal protein L3P OS=Sulfolobus acidocalda... [more]
RL3_METST2.516e-1529.0650S ribosomal protein L3P OS=Methanosphaera stadtm... [more]
RL3_THEON4.292e-1530.6550S ribosomal protein L3P OS=Thermococcus onnurine... [more]
RL3_PYRKO7.321e-1533.1750S ribosomal protein L3P OS=Pyrococcus kodakaraen... [more]
RL3_METPE9.561e-1530.0050S ribosomal protein L3P OS=Methanosphaerula palu... [more]
RL3_CALMQ1.249e-1430.3950S ribosomal protein L3P OS=Caldivirga maquilinge... [more]

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Properties
Property NameValue
Genbank descriptionC32005F11EF RVDevelop1 Citrus clementina cDNA clone C32005F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920235 ID=FC920235; Name=FC920235; organism=Citrus clementina; type=EST; length=697bp
GAAAACGAGTCAGTCGCCGCAGCAGCTCAGAGGAGGAGAATGTCTCACAG
GAAGTTTGAGCACCCAAGGCATGGTTCCCTTGGATTTCTTCCAAGGAAGC
GAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTTTTCCCAAGGATGACCCA
AGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGTTACAAGGCTGGGATGAC
CCACATTGTTAGGGATGTCGAGAAACCTGGATCTAAGCTTCACAAGAAGG
AGACCTGTGAGGCTGTTACCATTATTGAAACCCCTCCAATGATGGTGGTT
GGAGTTGTGGGATATGTGAAGACACCTCGTGGTCTTCGCTCTTTGAACAC
TGTATGGGCTCAGCATCTTAGTGAGGAGGTGAGAAGAAGGTTCTACAAGA
ACTGGTGCAAATCCAAGAAGAAGGCTTTCACAAAATACTCAAAGCAGTAT
GAAACAGATGAAGGGAAGAAAAGTATCCAAGCTCAGCTGGAGAAGATCAA
GAAGTATGCATCTGTTGTTCGTGTTCTTGCTCACACTCAGATTAGGAAAA
TGAAGGGTTTGAAGCAGAAGAAGGCACACCTGATGGAAATCCAGGTCAAT
GGTGGCACCATTGCTGAAAAAGTTGACTATGCATATGGCTTCTTTGAAAA
GCAATTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGACAT
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