FC920235
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_SULTO (50S ribosomal protein L3P OS=Sulfolobus tokodaii GN=rpl3p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.742e-16 Identity = 61/207 (29.47%), Postives = 101/207 (48.79%), Query Frame = 1 Query: 40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYAS---VVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEK 651 M HRK PR GS G PRKRA+ +++P ++P +L F+GYK GM+HI +KP S + KE V++IET YV P+G + T + +SE++ + + + + D K+ ++ +L++I + +RVL TQ + + L +KK ++E+QV GG I +++Y K Sbjct: 1 MGHRKLASPRRGSAGVRPRKRASEILPTPRSWPTIQSNEP-KLLGFVGYKVGMSHIFMIDDKPTSPNYGKEIYVPVSVIETPPVIPLAIRAYVMGPKGEPTTLTEYWGDISEDLLKLIQQR-----------KVTRLKID--KEKMKGKLDEINNKLNDILYLRVLIATQPKLVPSLGKKKPEIVEVQVGGGDIKSQLNYVLNILGK 193
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.648e-16 Identity = 54/197 (27.41%), Postives = 94/197 (47.72%), Query Frame = 1 Query: 64 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654 PR GSL F PRKRA +++++ D+ + + F GYKAGMTH++ ++P S E VT++E Y G+R +WA++LS+++ R + + I+++++++ + +RVLAHT R + G+ +K +MEI V G ++ E++ A G Q Sbjct: 7 PRRGSLAFSPRKRAKSEVPRIRSWVADERAG---MAGFAGYKAGMTHVIMIDDRPRSLTEGMEISVPVTVVEVPPMSVAALRVYEPYNGGIRPAGELWAENLSQDLERAI--------------TIPKARRGASLEDIESRVDELCE----IRVLAHTNPRLLTGVPKKVPDIMEIPVTGRSVEEQLKAAEGLLGSQ 182
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METS3 (50S ribosomal protein L3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl3p PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.129e-15 Identity = 60/195 (30.77%), Postives = 92/195 (47.18%), Query Frame = 1 Query: 52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTH-IVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633 + PR GS+ F PRKRAA+ ++K++P++D K L GYK GMTH +V D +K S + + VT++E Y KT RGL+ + V A +L EE+ R+ +Y E IQ L+K + ++VL HT K+ + +KK + E + G EK++ A Sbjct: 3 RHHQPRKGSVAFSPRKRAAKETPRIKSWPQNDEPK---LLGLAGYKVGMTHALVTDSDK-NSPTNGMDVFTPVTVLEVPPVVVMGIRAYEKTSRGLKVITEVLADNLDEELSRKI-------------SLPKEYNKSEAIAKIQGVLDKTED----IKVLVHTN-PKVTSVPKKKPDIFECGIGGANPEEKLNTA 175
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.475e-15 Identity = 66/199 (33.17%), Postives = 90/199 (45.23%), Query Frame = 1 Query: 52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFY---KNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633 K PR GSL F PRKRA ++K +PKD R+ F GYKAGMTHI+ + PG KE VTI+E Y + GL + VW L++ V+RR KN+ +E K+ QLE + + VR+L HTQ +K +KK +ME + G + K +YA Sbjct: 3 KVHRPRRGSLAFSPRKRARSVVPRIKKWPKD---SEVRMLGFAGYKAGMTHILMIDDSPG-LTKGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHELNDNVKRRIKTLPKNY----------------GEEDFKAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAKFEYA 179
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_SULAC (50S ribosomal protein L3P OS=Sulfolobus acidocaldarius GN=rpl3p PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.927e-15 Identity = 64/207 (30.92%), Postives = 94/207 (45.41%), Query Frame = 1 Query: 40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG-LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQL-EKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654 M HRK PR GS G PRKRA K +P + +P +L F+GYKAGMTH+ +KP S + KE VTI+E+ Y +G L L WA EE ++ K + D K + L +K + +R+L TQ + L +K+ ++EIQ+ GG+I ++++Y KQ Sbjct: 1 MGHRKLSSPRRGSAGLRPRKRADEILPTPKNWPLVNLKEP-KLLGFIGYKAGMTHVYMIDDKPTSPNYGKEVYTPVTIVESPPILGLALRAYHIDSKGELSVLVDYWANF--EEGSLKYLKR-----------KITSLKVDSSKMKEKLDLIQKNLNNITYMRLLVSTQPWLVPSLGKKRPEIVEIQIGGGSIQDQLNYGLSLLGKQ 193
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METST (50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl3p PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.516e-15 Identity = 59/203 (29.06%), Postives = 98/203 (48.28%), Query Frame = 1 Query: 52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWA-QHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGK-KSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654 + PR GS+ F PRKR AR +V +P+ D + L AF GYK GMTH+ + GS E VTI+E Y KT GL++L V A +L +E+ R+ +++ E K + ++ +++ I + +RVL HT+ K+ + +KK ++E + G ++ +K++YA K+ Sbjct: 3 RHHQPRKGSVAFSPRKRVARETPRVSTWPELDEAG---LLAFAGYKVGMTHVTALDSRKGSPTENMELSVPVTILEAPPLVVLGIRAYTKTTYGLKTLTDVIANDNLDDELSRKI--------------SVPKFDDIEAKIEELRNKIDDIDE----IRVLIHTK-PKLTSVPKKKPEVLEFGLGGKSVEDKLEYAISILGKE 183
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_THEON (50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.292e-15 Identity = 61/199 (30.65%), Postives = 91/199 (45.73%), Query Frame = 1 Query: 52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYAS-----VVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633 K PR GSL + PRKRA +++ +PKD R+ F GYKAGMTHI+ ++PG KE VT++E Y + GL + VW L++ V+RR D +++ QA+L +++ + VR+L HTQ +K +KK +ME + G + K DYA Sbjct: 3 KIHRPRRGSLAYSPRKRAKSIVPRIRKWPKD---SEVRMLGFAGYKAGMTHILMIDDRPG-LTKGKEIFMPVTVVEVPPLFVYGIRAYRQGYLGLETATEVWFHELNDYVKRRI----------------KTLPKDYNEEAFQAKLGQLEDLVNDGEIVDVRLLVHTQPWLIK--LKKKPEVMEYAIGGDDVKAKFDYA 179
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_PYRKO (50S ribosomal protein L3P OS=Pyrococcus kodakaraensis GN=rpl3p PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.321e-15 Identity = 66/199 (33.17%), Postives = 90/199 (45.23%), Query Frame = 1 Query: 52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFY---KNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633 K PR GSL + PRKRA +++++PKD R+ F GYKAGMTHI+ + PG KE VTI+E Y + GL + VW L + V RR KN+ +E ++ QLE + + VR+L HTQ + GLK KK +ME + G + K DYA Sbjct: 3 KIHRPRRGSLAYSPRKRAKSIVPRIRSWPKD---SEVRMLGFAGYKAGMTHILMIDDSPG-LTKGKEIFVPVTIVEVPPLFVYGIRAYKQGYLGLETATEVWFHDLHKNVARRIKTLPKNY----------------NEEAFQAKLGQLEDLVNDGEIADVRLLVHTQ-PWLIGLK-KKPEVMEYAIGGDDVKAKFDYA 179
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METPE (50S ribosomal protein L3P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl3p PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15 Identity = 57/190 (30.00%), Postives = 86/190 (45.26%), Query Frame = 1 Query: 64 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633 PR GSL + PRKRA K ++P D +P L +F GYK GMTH++ + S K+ VTIIE Y G R+L VW + LS + RR +Y + G K++ + + + L +TQ + G+ +K LME+ + GGT+ +KV++A Sbjct: 7 PRRGSLAYSPRKRAKSQVPKYHSWPARD-GEPI-LQSFAGYKVGMTHVIMVDDHKNSPTEGKDIMVPVTIIEIPPMKVAAIRAYTADTYGKRALTEVWTEQLSTLLGRRI-------------TLPKKYSEEAGFKALSEAV--AAGTVTELHALMYTQPDTLTGVPKKVPELMEVCIGGGTLEQKVEFA 179
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_CALMQ (50S ribosomal protein L3P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl3p PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14 Identity = 62/204 (30.39%), Postives = 97/204 (47.55%), Query Frame = 1 Query: 52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTP--RGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEKQ 654 K PR GS+ + PRKRA+ +++ +P D KP L F+GYKAGM H+ ++ S KE +AVT++ET Y P L S+ W ++ EVR+ + +++TD+ +Q L+ + S ++V+A TQ K G+ +K ++EI V G TI E+ YA G K+ Sbjct: 4 KIHRPRRGSMAYYPRKRASDIVPRIRNWPVIDLGKPT-LLGFVGYKAGMVHVTVVDDRKTSPFFGKELVKAVTVVETPPLYVVGLRAYAINPLKAELVSVGEAWV-NIPNEVRKYIARR--------IPTLPEKFDTDKALADLQGLLDSV----SYIKVIAMTQPYK-AGVGKKTPEVLEIPVGGVPTIDEQFKYASGLLGKE 192 The following BLAST results are available for this feature:
BLAST of FC920235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920235 ID=FC920235; Name=FC920235; organism=Citrus clementina; type=EST; length=697bpback to top |