FC920235
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_SULSO (50S ribosomal protein L3P OS=Sulfolobus solfataricus GN=rpl3p PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.631e-14 Identity = 62/215 (28.84%), Postives = 95/215 (44.19%), Query Frame = 1 Query: 40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654 M HRK PR GS G PRKR++ + +P+ + P +L F+GYK GMTH+ + P S + KE VT++E Y +G ++ T W+ + ++ RR + + DE KK +L+ IK + R+L TQ RK+ L +K L+EIQ+ GG ++DYA K+ Sbjct: 1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRRIHS------------ISSFLKDDESKKKFDERFNTKLDLIKSNLDRIVYFRLLVSTQPRKIPSLGKKAPDLVEIQIGGGEKKSQLDYALNILGKE 202
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_PYRIL (50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl3p PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.631e-14 Identity = 62/206 (30.10%), Postives = 94/206 (45.63%), Query Frame = 1 Query: 52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEK 651 K PR GS+G PRKRAA +V+ +P+ + KP L F YKAGM H V ++P S L+ KE +AVT+++ Y P RS+ VWA L +RR T K + Q++K++++ V VR L TQ + G+ +K L+EI + G ++ E++ +A K Sbjct: 8 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPT-LLGFAAYKAGMLHAVVVEDRPTSPLYGKEVVKAVTVLDAPPLFIWGFRLYTLDPTNGYKRSIAEVWAPELPAYLRRVL--------------------TLPEKVDVDKQMKKVEEFKDVAVDVRALVATQ-PHLSGIGKKTPELLEIPIGGVPSVDERIKFAVSLLGK 191
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_THENV (50S ribosomal protein L3P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl3p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14 Identity = 61/206 (29.61%), Postives = 92/206 (44.66%), Query Frame = 1 Query: 52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEK 651 K PR GS+G PRKRAA +V+ +P+ + KP L F YKAGM H V ++P S L+ KE VT+++ Y P RS+ VWA L +RR T K + Q++K++++ V VR L TQ + G+ +K L+EI + G ++ E++ +A K Sbjct: 4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVEDRPTSPLYGKEVVRPVTVLDAPPLFIWGFRLYTLDPTNGYRRSIAEVWAPELPAYIRRVL--------------------TLPEKADVDKQMKKVEEFKDVAVDVRALVATQ-PHLSGIGKKTPELLEIPIGGVPSVDERIKFAVSLLGK 187
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_PYRAR (50S ribosomal protein L3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl3p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14 Identity = 63/206 (30.58%), Postives = 92/206 (44.66%), Query Frame = 1 Query: 52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEK 651 K PR GS+G PRKRAA +V+ +P + KP L F YKAGM H V ++P S L+ KE +AVT+++ Y P LRS VWA L + + R T K + Q++++++Y V VR L TQ + G+ +K L+EI + G I E++ +A K Sbjct: 4 KINRPRRGSMGVYPRKRAADIVPRVRTWPDVNLGKPA-LLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAPPLFVWGFRLYTLDPTNGYLRSAAEVWAGELPKHLSRVL--------------------TLPEKVDVDKQMKQVEEYRDVAVEVRALVATQ-PHLSGIGKKTPELLEIPIGGVPNIDERIKFAISLLGK 187
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_PICTO (50S ribosomal protein L3P OS=Picrophilus torridus GN=rpl3p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14 Identity = 51/191 (26.70%), Postives = 86/191 (45.03%), Query Frame = 1 Query: 61 HPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633 H R GS+ + PR RA R +G ++++P+ + ++ AF GYK GMTHI + S + VT++E Y + GL ++ WA+++ ++V RR K + KK I+ K VR++ HT + + G+ K + EI++ G TI ++ YA Sbjct: 6 HSRRGSMAYYPRVRAKRIQGDIRSWPEIEGQ--TKVQAFAGYKVGMTHIQMVDYRKNSVTAGQVIMAPVTVVEVPPLTVMSIRYYARGDNGLEVISEEWAENIDKDVLRRINK------------------INRHKKGIEV------KDVDDVRLMVHTNPQLVSGVPSKTPEIFEIRIGGSTIENRIKYA 170
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14 Identity = 57/201 (28.36%), Postives = 90/201 (44.78%), Query Frame = 1 Query: 52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654 K PR GSL F PRKRA R K++++P+ + K L AF YKAG TH + P S ++ VT++E Y K +GL++L VWA +E+ R+ + K+ +L+++ VR + HT K L +KK ++EI++ G I++ + YA K+ Sbjct: 4 KRNRPRRGSLAFSPRKRAKRPVPKIRSWPERETVK---LLAFPVYKAGTTHALYKENNPKSPNADQDVFTPVTVMEAPDITIAGIRAYGKDTKGLKALTEVWADSFDKELGRKI-------------------NLPKEPKANTEKLDEVADKIVEVRAIVHTN-PKDTNLPKKKPEIIEIKIGGKNISDIIAYAKDIIGKK 181
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_PYRAE (50S ribosomal protein L3P OS=Pyrobaculum aerophilum GN=rpl3p PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14 Identity = 61/206 (29.61%), Postives = 95/206 (46.12%), Query Frame = 1 Query: 52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRG--LRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV---VRVLAHTQIRKMKGLKQKKAHLMEIQVNG-GTIAEKVDYAYGFFEK 651 K PR GS+G PRKRAA +V+ +P+ + KP L F YKAGM H V ++P S L+ KE +AVT+++ Y P R++ VWA L + + R T K + QL+K++++ V VR L TQ + G+ +K L+EI + G ++ E++++A K Sbjct: 4 KINRPRRGSMGVYPRKRAADIVPRVRTWPEVNLGKPA-LLGFAAYKAGMLHAVVVDDRPTSPLYGKEVVKAVTVLDAPPLYVWGFRLYTLDPTNGYKRAVAEVWASELPKFLHRVL--------------------TLPEKLDVDKQLKKVEEFRDVAVDVRALVATQ-PHLSGIGKKTPELLEIPIGGVPSVDERINFAISLLGK 187
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METKA (50S ribosomal protein L3P OS=Methanopyrus kandleri GN=rpl3p PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14 Identity = 57/201 (28.36%), Postives = 91/201 (45.27%), Query Frame = 1 Query: 37 RMSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASV--VRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633 R R PR GSL F PRKRA+R +++++P ++ R+ F GYKAGMTH + + P S +E VTI++ Y TP G R + WA+ E R + +G+ ++E++ V +RV+ TQ +K G+ +KK +ME ++ G + E+ +YA Sbjct: 3 RGGRRNPGRPRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTEGEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAEIPEELEMDRVFT-----------------VPKDGEAGDLDKIEELVDEGIVEEIRVIVATQPKK-AGVPKKKPDVMEYRIGGKDVRERFEYA 182
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_SULIA (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.27) GN=rpl3p PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14 Identity = 63/217 (29.03%), Postives = 98/217 (45.16%), Query Frame = 1 Query: 40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWA----QHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654 M HRK PR GS G PRKR++ + +P+ + P +L F+GYK GM+H+ + P S + KE VT++E Y +G ++ T W+ Q L R R + ++ + DE KK + ++L+ IK + R+L TQ RK+ L +K L+EIQ+ GG ++DYA K+ Sbjct: 1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIRSFSSFL--------------KNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKE 202
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_SULIY (50S ribosomal protein L3P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14 Identity = 61/215 (28.37%), Postives = 97/215 (45.12%), Query Frame = 1 Query: 40 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNT-VWAQHLSE--EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQ----AQLEKIKKYASVV---RVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654 M HRK PR GS G PRKR++ + +P+ + P +L F+GYK GM+H+ + P S + KE VT++E Y +G ++ T W+ + ++ RR + + DE KK + ++L+ IK + R+L TQ RK+ L +K L+EIQ+ GG ++DYA K+ Sbjct: 1 MGHRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSPNP-KLLGFVGYKVGMSHVFMIDDWPNSPTNGKEIYMPVTVLEVPPIIPLALRAYAVDGKGEPNVITEYWSPSSLQFLDITRRIHS------------LSSFLKNDESKKKFEEKFGSKLDLIKSNLDRIVYFRLLVATQPRKIPSLGKKVPDLVEIQIGGGEKKAQLDYALNVLGKE 202 The following BLAST results are available for this feature:
BLAST of FC920235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 77
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920235 ID=FC920235; Name=FC920235; organism=Citrus clementina; type=EST; length=697bpback to top |