FC920235

Overview
NameFC920235
Unique NameFC920235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length697
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 59/199 (29.65%), Postives = 92/199 (46.23%), Query Frame = 1
Query:   64 PRHGSLGFLPRKRAARHRGKVKAFPK--DDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSE-EVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEK 651
            PR GSLG+ PR RA   + K++ + +  D P    ++  F+G+KAGM+HIV   ++P S     E    VTI+E           Y  +P G + +   W   L   E      KN               Y+TDE    I A+L K K   + +RV+  T   ++ G+ +K   LME ++ GG +A++ ++A     K
Sbjct:    7 PRRGSLGYSPRVRARSQKPKMRNWAELGDQP----KIQGFVGFKAGMSHIVMVDDRPHSATEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAWISDLKMLESLTHLPKN--------------GYKTDEQLAKI-AELVK-KGVVADLRVMTVTLTSEVSGIPKKVPELMENRIAGGDMAKRFEFAKSLMGK 185          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METMA (50S ribosomal protein L3P OS=Methanosarcina mazei GN=rpl3p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 51/190 (26.84%), Postives = 86/190 (45.26%), Query Frame = 1
Query:   64 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633
            P+ GSL F PRKRA  H  + +A+P  + +   +L +F GYK GMTH++   +   S     E    VT+IET          Y +   G +++   WA  L  E++RR                       EG ++I   +E+ +   S +R + +T  + + G+ +K   +ME  ++   +  K +YA
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDIKNSLTQGMEISVPVTVIETPAIRVAAVRAYTEDSTGEKAIAEAWAADLDSELKRRI-------------PIPAAGNQAEGLENIGKLIEEGR--VSDIRAVTYTLPKSLTGVPKKVPDIMESGISAKDLGAKFEYA 179          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 54/190 (28.42%), Postives = 84/190 (44.21%), Query Frame = 1
Query:   64 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633
            P+ GSL F PRKRA  H  + +A+P  + +   RL  F GYK GMTH++   +   S     E    VTIIET          Y +   G +++  VWA  L  E++RR                       E   +I   +E+ K   S +R + +T  + + G+ +K   +ME  ++   +  K +YA
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPRLQGFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTIIETPAIRVAAIRAYAEDTAGEKAIAEVWATDLDPELKRRI-------------PVPKGDNMAETLGNIGKMIEEGK--VSDIRAVTYTLPKSLTGVPKKTPDIMESGISARDLNTKFEYA 179          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METBU (50S ribosomal protein L3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 53/199 (26.63%), Postives = 84/199 (42.21%), Query Frame = 1
Query:   52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKY-----ASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633
            K   PR GSL + PRKR+  H  + +++P+ D     +L  F GYK GMTH++   +   S     E    VTIIET          Y K   G  ++   W   L +++ RR                            + A LEK++       A+ +R++ +T    + G+ +K   +ME  V+G  +  K +YA
Sbjct:    3 KGHRPRRGSLAYSPRKRSQSHIPRFRSWPESDAEP--KLQGFAGYKVGMTHVIMIDDVKHSLTEGTEISVPVTIIETPAIRVAAIRAYGKDTYGEIAIAEAWTDVLDKDLSRRL--------------------KTAKNPDVNASLEKLETLVESGRANDIRLITYTLPSTLTGVPKKVPDVMETGVSGSDVKAKFEYA 179          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.401e-12
Identity = 51/190 (26.84%), Postives = 86/190 (45.26%), Query Frame = 1
Query:   64 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYA 633
            P+ GSL F PRKRA  H  + +A+P  + +   +L +F GYK GMTH++   +   S     E    VT+IET          Y +   G +++  VWA  L  E++RR                       E  ++I   +E+ +   S VR + +T  + + G+ +K   +ME  ++   +  K +Y+
Sbjct:    7 PKRGSLAFSPRKRAKSHIPRFRAWP--EATGEPKLQSFAGYKVGMTHVIMVDDTKNSLTQGMEISVPVTVIETPAIRVAAIRAYAEDSTGEKAIAEVWAADLDPELKRRI-------------PIPAAGNQAEALENIGKLIEEGR--VSDVRAVIYTLPKSLTGVPKKVPDIMESGISARDLGTKFEYS 179          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_NANEQ (50S ribosomal protein L3P OS=Nanoarchaeum equitans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 51/197 (25.89%), Postives = 90/197 (45.69%), Query Frame = 1
Query:   64 PRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDYAYGFFEKQ 654
            PR GS+GF PRKRA+R   ++K +PK +  KP    AF  YK GMTH + ++       + +     VT++E           Y K    L+ +++++   L + V R+  K                Y  +E K+   ++ +     A  V+++  TQ  K+K   +K   + +I + G  + +K++YA     K+
Sbjct:    9 PRRGSMGFWPRKRASRIYPRIKTWPKIEEIKP---LAFAAYKVGMTHTILNI-------NGERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK-------------LKNYNFEEKKEQFLSKADN----ADEVKIIVSTQPWKIK--LKKTPEIFDIPIGGSDVNKKLEYALSLLGKE 176          
BLAST of FC920235 vs. ExPASy Swiss-Prot
Match: RL3_PYRAB (50S ribosomal protein L3P OS=Pyrococcus abyssi GN=rpl3p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 57/199 (28.64%), Postives = 90/199 (45.23%), Query Frame = 1
Query:   52 KFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVRDVEKPGSKLHKKETCEAVTIIETXXXXXXXXXXYVKTPRGLRSLNTVWA------QHLSEEVRRRFYKNWCXXXXXXXXXXXXQYETDEGKKSIQAQLEKIKKYASVVRVLAHTQIRKMKGLKQKKAHLMEIQVNGGTIAEKVDY 630
            K   PR GSL F PRKRA     +++++PK+      R+  F GYKAGMTHI+   ++PG   + KE    VTIIET          Y +   GL +   V         ++S++ + R +  +              Y  D+ ++ +   LE + K   +V V A    +      +KK  +ME  + G ++ EK +Y
Sbjct:    3 KVHRPRRGSLAFSPRKRAKSIVPRIRSWPKE---TEVRMLGFAGYKAGMTHILMIDDEPG-LTNGKEIFMPVTIIETPPLRVFGIRAYRQGYLGLETATEVIVPDFELDNYVSKKAKGRKF-TFYQLLKRRIATLPKNYTKDDFEQKL-GNLEDMIKEGEIVEVRALVATQPWVIKLKKKPEVMEYAIGGTSVEEKFNY 195          
The following BLAST results are available for this feature:
BLAST of FC920235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
RL3_UNCMA1.169e-1229.6550S ribosomal protein L3P OS=Uncultured methanogen... [more]
RL3_METMA1.169e-1226.8450S ribosomal protein L3P OS=Methanosarcina mazei ... [more]
RL3_METBF1.169e-1228.4250S ribosomal protein L3P OS=Methanosarcina barker... [more]
RL3_METBU1.994e-1226.6350S ribosomal protein L3P OS=Methanococcoides burt... [more]
RL3_METAC3.401e-1226.8450S ribosomal protein L3P OS=Methanosarcina acetiv... [more]
RL3_NANEQ9.894e-1225.8950S ribosomal protein L3P OS=Nanoarchaeum equitans... [more]
RL3_PYRAB3.760e-1128.6450S ribosomal protein L3P OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32005F11EF RVDevelop1 Citrus clementina cDNA clone C32005F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920235 ID=FC920235; Name=FC920235; organism=Citrus clementina; type=EST; length=697bp
GAAAACGAGTCAGTCGCCGCAGCAGCTCAGAGGAGGAGAATGTCTCACAG
GAAGTTTGAGCACCCAAGGCATGGTTCCCTTGGATTTCTTCCAAGGAAGC
GAGCTGCTCGTCACAGAGGAAAGGTGAAGGCTTTTCCCAAGGATGACCCA
AGCAAGCCTTGCAGGCTCACTGCCTTTTTGGGTTACAAGGCTGGGATGAC
CCACATTGTTAGGGATGTCGAGAAACCTGGATCTAAGCTTCACAAGAAGG
AGACCTGTGAGGCTGTTACCATTATTGAAACCCCTCCAATGATGGTGGTT
GGAGTTGTGGGATATGTGAAGACACCTCGTGGTCTTCGCTCTTTGAACAC
TGTATGGGCTCAGCATCTTAGTGAGGAGGTGAGAAGAAGGTTCTACAAGA
ACTGGTGCAAATCCAAGAAGAAGGCTTTCACAAAATACTCAAAGCAGTAT
GAAACAGATGAAGGGAAGAAAAGTATCCAAGCTCAGCTGGAGAAGATCAA
GAAGTATGCATCTGTTGTTCGTGTTCTTGCTCACACTCAGATTAGGAAAA
TGAAGGGTTTGAAGCAGAAGAAGGCACACCTGATGGAAATCCAGGTCAAT
GGTGGCACCATTGCTGAAAAAGTTGACTATGCATATGGCTTCTTTGAAAA
GCAATTCCTGTTGATGCTGTTTTCCAGAAGGATGAGATGATTGACAT
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