FC920236

Overview
NameFC920236
Unique NameFC920236
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14293 contig Ccv1_Contig14293:154..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_PYRFU (Translation initiation factor 6 OS=Pyrococcus furiosus GN=eif6 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.852e-16
Identity = 57/150 (38.00%), Postives = 80/150 (53.33%), Query Frame = 2
Query:  206 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVV---VQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 646
            +L FENS  +GVF   T+   L+  G  E         L    PVV+ S+  +RIIG L AGN N +++P    D EL+ ++N+  +  +   V   + + +ALGN I  ND  AL  +   RE  + I D+LGVEV R  IAG + VGS
Sbjct:    5 KLDFENSPYLGVFGIATDKVVLIREGLQEKKLEVIREVLK--VPVVEASLMKSRIIGVLGAGNSNAIIVPWYVWDSELEKIKNAFREYGIDTEVVPFQTKYTALGNLILTNDKGALVSSKFSREEAKKIGDILGVEVERGVIAGIVAVGS 152          
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_THEON (Translation initiation factor 6 OS=Thermococcus onnurineus (strain NA1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16
Identity = 55/150 (36.67%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  206 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIE---ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 646
            +L FENS  +GV+   T+   L+  G  E         L    P+++TSI  +RI+G   AGN N +++P    D EL+H++N L +  +  RIE     L+A GN I  ND  AL      RE  + + D+LGVEV R  I     VGS
Sbjct:    5 KLDFENSPYLGVYGTATDRVALIREGLGEKKLEVLREVLK--VPLIETSIMKSRIVGVFAAGNSNAIVVPWYIWDAELEHIQNELNELDIDMRIEPFQSTLTAFGNLILANDKAALISVKFTREEAKKLEDILGVEVERGMIGDYHAVGS 152          
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_PYRHO (Translation initiation factor 6 OS=Pyrococcus horikoshii GN=eif6 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.200e-15
Identity = 53/150 (35.33%), Postives = 76/150 (50.67%), Query Frame = 2
Query:  206 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI---EERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 646
            RL FENS  +GVF   T+   L+  G  E         L    PV++ S+  +RIIG L  GN N ++LP    D E++ ++ +L +  +   +     + +ALGN I  ND  AL      R+  + I ++LGVEV R  IAG   VGS
Sbjct:    5 RLDFENSPYLGVFGVATDRVVLIREGLQEKKLEVIRETLK--VPVIEVSVMKSRIIGTLATGNSNAIILPWYVWDAEIERIKKALSEYGIDMEVVPFRSKYTALGNLILTNDKAALVSAKFSRKEAQEIGEILGVEVERGVIAGLHAVGS 152          
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_PYRAB (Translation initiation factor 6 OS=Pyrococcus abyssi GN=eif6 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.200e-15
Identity = 56/150 (37.33%), Postives = 76/150 (50.67%), Query Frame = 2
Query:  206 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI---EERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 646
            RL FENS  +GVF   T+   LV  G  E         L    PV++ SI  +RIIG L  GN N +L+P    D E++ ++++  +  +   I     + +ALGN I  ND  AL      R+  + I D+LGVEV R  IAG   VGS
Sbjct:    5 RLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLK--VPVIEASIMKSRIIGTLATGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAKFSRDEAKEIGDILGVEVERGLIAGLHAVGS 152          
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_THEGJ (Translation initiation factor 6 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=eif6 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 54/150 (36.00%), Postives = 75/150 (50.00%), Query Frame = 2
Query:  206 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI---EERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 646
            RL FENS  +GV+   T+   ++  G  E   +T    L    P+++TS+  +RI+G   AGN N L++P    D EL  +   L +  +   +   + RL+A GN I  ND  AL   D  RE    I D+LGV V R  IA    VGS
Sbjct:    5 RLDFENSPYLGVYGFATDRVAVIREGLGEKKLATLREVLK--VPLIETSVMKSRIVGIFVAGNSNALIVPWYIWDAELDFINAQLREYGIDMEVVPFQSRLTAFGNLILANDKGALVSKDFTREEARKIEDILGVPVERGVIADYTAVGS 152          
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_PYRKO (Translation initiation factor 6 OS=Pyrococcus kodakaraensis GN=eif6 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.733e-14
Identity = 55/151 (36.42%), Postives = 79/151 (52.32%), Query Frame = 2
Query:  206 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGV-EVFRQTIAGNILVGS 646
            RL FENS  +GV+ + T+   L+  G  E         L    P+++TSI  +RI+G   AGN N +++P    D EL+ ++ +L +    + V   + RL+ALGN I  ND  AL   +  RE    I ++LGV EV R  IA    VGS
Sbjct:    5 RLDFENSPYLGVYGRATDRVLLLREGLGEKKLEVLREVLK--VPIIETSIMKSRIVGIFAAGNSNAIIVPWYIWDAELERIKTALNEFGIDMDVVPFKSRLTALGNLILTNDKAALVSKEFTREEANAIGEILGVDEVERGMIASYRSVGS 153          
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_NATPD (Translation initiation factor 6 OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=eif6 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13
Identity = 55/147 (37.41%), Postives = 71/147 (48.30%), Query Frame = 2
Query:  206 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 646
            R     S  VGVF+  T+ Y LV     ES  S FE EL DV   V T+I G+  +G L  GN+NGLL+    TD+E   L       VV   +   ++A GN +  N+  A  H DL R+    I + L V V R  IA    VG+
Sbjct:    3 RAALSGSSYVGVFATATDEYLLVRPDIEESLQSEFETEL-DV-TAVPTTIAGSGTVGSLAVGNENGLLVTERVTDRERDRLETETGLPVV--ELPGNINAAGNVVLANNEGAFVHPDLSRDALSAIEEALSVPVERGRIADVQTVGT 145          
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_METMA (Translation initiation factor 6 OS=Methanosarcina mazei GN=eif6 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13
Identity = 53/137 (38.69%), Postives = 75/137 (54.74%), Query Frame = 2
Query:  233 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVG 643
            +GVF+  T    LV         +  E E  DV  VV+T I G+ ++G L  GN NG LLP+ ++ +E+Q  R  +P  +    + +RL+A+GN +  ND  AL H +L     E+IA  L VEV+R TIAG   VG
Sbjct:   13 IGVFATCTEDLALVPPLTKPEVCTILE-EALDV-RVVETLINGSTVVGALSRGNSNGFLLPYGSSVEEMQK-RTGVPAGI----LPDRLNAVGNIVLANDSAALVHPELSDRALEIIARTLKVEVYRGTIAGIKNVG 142          
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_HALWD (Translation initiation factor 6 OS=Haloquadratum walsbyi (strain DSM 16790) GN=eif6 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13
Identity = 50/147 (34.01%), Postives = 71/147 (48.30%), Query Frame = 2
Query:  206 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 646
            R  F  S  VGVF++ T+   L+     +       AEL    P V T+IGG+  +G L  GN+NG+L+    T +E + +  +    V V  +  R++A GN I  ND+ A  H DL  E  E I   L V V R  +A    VG+
Sbjct:    3 RASFAGSPYVGVFARATDDVLLLRSDVDDDTADAMAAELD--IPAVATTIGGSGTVGALATGNENGILVTSNVTMREKEAIETTA--SVSVTELPGRINAAGNVILANDYGAYVHPDLSTEAVESIESALNVPVARGKLADVRTVGT 145          
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_NITMS (Translation initiation factor 6 OS=Nitrosopumilus maritimus (strain SCM1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 50/134 (37.31%), Postives = 72/134 (53.73%), Query Frame = 2
Query:  233 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPV--VKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAG 628
            +GV+  + +   L+ +G    F  T   +LA    V  + TSI  TR+IG LC  N  G+LLP T    E   L+  L  +V V  ++ +L+ALGN I  ND  A+    L +E  + I+DVLGVE  ++ IAG
Sbjct:   14 IGVYISVNDNTILLPMG----FAKTKAEKLAKYLGVNYLFTSIANTRLIGALCIMNNKGILLPKTAYQNEFDFLKKELDLEVGV--LDSKLTALGNVICANDKGAVVSPWLSKEDCQTISDVLGVETIQKKIAG 141          
The following BLAST results are available for this feature:
BLAST of FC920236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
IF6_PYRFU1.852e-1638.00Translation initiation factor 6 OS=Pyrococcus furi... [more]
IF6_THEON4.125e-1636.67Translation initiation factor 6 OS=Thermococcus on... [more]
IF6_PYRHO1.200e-1535.33Translation initiation factor 6 OS=Pyrococcus hori... [more]
IF6_PYRAB1.200e-1537.33Translation initiation factor 6 OS=Pyrococcus abys... [more]
IF6_THEGJ7.780e-1536.00Translation initiation factor 6 OS=Thermococcus ga... [more]
IF6_PYRKO1.733e-1436.42Translation initiation factor 6 OS=Pyrococcus koda... [more]
IF6_NATPD1.123e-1337.41Translation initiation factor 6 OS=Natronomonas ph... [more]
IF6_METMA1.123e-1338.69Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_HALWD9.511e-1334.01Translation initiation factor 6 OS=Haloquadratum w... [more]
IF6_NITMS1.242e-1237.31Translation initiation factor 6 OS=Nitrosopumilus ... [more]

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Properties
Property NameValue
Genbank descriptionC32005G01EF RVDevelop1 Citrus clementina cDNA clone C32005G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920236 ID=FC920236; Name=FC920236; organism=Citrus clementina; type=EST; length=724bp
GATAGAAAGTAGGAAGCAGAAACCCTCTTCTCATCTCATATTGGGTGGGG
TACTGGGGTTTGTTTCCGGCCGAAAGGGTAGCAAGTGAAGGGCCGCCTCA
TCATCATTATCATCAGCGCTTTGGCATTTCGAGTTTTCGACATCGTTTTC
CGTCATTTTGCTTTTTAATCAATTCAATTTCTGTCAATCTGTAATCATGG
CAACCAGGCTTATGTTTGAGAATTCATGTGAGGTTGGTGTGTTTTCCAAG
CTCACTAATGCTTATTGCTTGGTTGCAATAGGAGGTTCTGAAAGCTTCTA
CAGCACATTTGAGGCTGAGTTAGCAGATGTTTTTCCTGTTGTTAAAACAT
CTATTGGTGGCACTAGGATTATCGGCCGGCTTTGTGCTGGAAACAAAAAT
GGGCTTCTCTTGCCGCACACTACCACAGACCAAGAACTTCAACACTTGAG
GAACAGCCTACCTGATCAAGTTGTCGTTCAGCGTATTGAAGAGAGGCTAT
CTGCCCTGGGCAACTGTATAGCATGCAACGACCATGTTGCTCTTACACAC
ACAGATCTTGACAGGGAAACAGAGGAAATGATTGCAGATGTTCTTGGAGT
AGAAGTTTTTAGGCAGACAATTGCTGGTAATATCCTTGTTGGCAGTTACT
GTTCCTTCTCCACAGAGGAGGCTTGGTTCACCTCACACATCCATTGAGGA
CTTGGATGAAACTTCACTCTCTTG
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