FC920236
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_PYRFU (Translation initiation factor 6 OS=Pyrococcus furiosus GN=eif6 PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.852e-16 Identity = 57/150 (38.00%), Postives = 80/150 (53.33%), Query Frame = 2 Query: 206 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVV---VQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 646 +L FENS +GVF T+ L+ G E L PVV+ S+ +RIIG L AGN N +++P D EL+ ++N+ + + V + + +ALGN I ND AL + RE + I D+LGVEV R IAG + VGS Sbjct: 5 KLDFENSPYLGVFGIATDKVVLIREGLQEKKLEVIREVLK--VPVVEASLMKSRIIGVLGAGNSNAIIVPWYVWDSELEKIKNAFREYGIDTEVVPFQTKYTALGNLILTNDKGALVSSKFSREEAKKIGDILGVEVERGVIAGIVAVGS 152
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_THEON (Translation initiation factor 6 OS=Thermococcus onnurineus (strain NA1) GN=eif6 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16 Identity = 55/150 (36.67%), Postives = 77/150 (51.33%), Query Frame = 2 Query: 206 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIE---ERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 646 +L FENS +GV+ T+ L+ G E L P+++TSI +RI+G AGN N +++P D EL+H++N L + + RIE L+A GN I ND AL RE + + D+LGVEV R I VGS Sbjct: 5 KLDFENSPYLGVYGTATDRVALIREGLGEKKLEVLREVLK--VPLIETSIMKSRIVGVFAAGNSNAIVVPWYIWDAELEHIQNELNELDIDMRIEPFQSTLTAFGNLILANDKAALISVKFTREEAKKLEDILGVEVERGMIGDYHAVGS 152
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_PYRHO (Translation initiation factor 6 OS=Pyrococcus horikoshii GN=eif6 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.200e-15 Identity = 53/150 (35.33%), Postives = 76/150 (50.67%), Query Frame = 2 Query: 206 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI---EERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 646 RL FENS +GVF T+ L+ G E L PV++ S+ +RIIG L GN N ++LP D E++ ++ +L + + + + +ALGN I ND AL R+ + I ++LGVEV R IAG VGS Sbjct: 5 RLDFENSPYLGVFGVATDRVVLIREGLQEKKLEVIRETLK--VPVIEVSVMKSRIIGTLATGNSNAIILPWYVWDAEIERIKKALSEYGIDMEVVPFRSKYTALGNLILTNDKAALVSAKFSRKEAQEIGEILGVEVERGVIAGLHAVGS 152
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_PYRAB (Translation initiation factor 6 OS=Pyrococcus abyssi GN=eif6 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.200e-15 Identity = 56/150 (37.33%), Postives = 76/150 (50.67%), Query Frame = 2 Query: 206 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI---EERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 646 RL FENS +GVF T+ LV G E L PV++ SI +RIIG L GN N +L+P D E++ ++++ + + I + +ALGN I ND AL R+ + I D+LGVEV R IAG VGS Sbjct: 5 RLDFENSPYLGVFGVATDRVVLVREGLQEKKLEVIREVLK--VPVIEASIMKSRIIGTLATGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAKFSRDEAKEIGDILGVEVERGLIAGLHAVGS 152
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_THEGJ (Translation initiation factor 6 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=eif6 PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15 Identity = 54/150 (36.00%), Postives = 75/150 (50.00%), Query Frame = 2 Query: 206 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI---EERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 646 RL FENS +GV+ T+ ++ G E +T L P+++TS+ +RI+G AGN N L++P D EL + L + + + + RL+A GN I ND AL D RE I D+LGV V R IA VGS Sbjct: 5 RLDFENSPYLGVYGFATDRVAVIREGLGEKKLATLREVLK--VPLIETSVMKSRIVGIFVAGNSNALIVPWYIWDAELDFINAQLREYGIDMEVVPFQSRLTAFGNLILANDKGALVSKDFTREEARKIEDILGVPVERGVIADYTAVGS 152
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_PYRKO (Translation initiation factor 6 OS=Pyrococcus kodakaraensis GN=eif6 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.733e-14 Identity = 55/151 (36.42%), Postives = 79/151 (52.32%), Query Frame = 2 Query: 206 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGV-EVFRQTIAGNILVGS 646 RL FENS +GV+ + T+ L+ G E L P+++TSI +RI+G AGN N +++P D EL+ ++ +L + + V + RL+ALGN I ND AL + RE I ++LGV EV R IA VGS Sbjct: 5 RLDFENSPYLGVYGRATDRVLLLREGLGEKKLEVLREVLK--VPIIETSIMKSRIVGIFAAGNSNAIIVPWYIWDAELERIKTALNEFGIDMDVVPFKSRLTALGNLILTNDKAALVSKEFTREEANAIGEILGVDEVERGMIASYRSVGS 153
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_NATPD (Translation initiation factor 6 OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=eif6 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13 Identity = 55/147 (37.41%), Postives = 71/147 (48.30%), Query Frame = 2 Query: 206 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 646 R S VGVF+ T+ Y LV ES S FE EL DV V T+I G+ +G L GN+NGLL+ TD+E L VV + ++A GN + N+ A H DL R+ I + L V V R IA VG+ Sbjct: 3 RAALSGSSYVGVFATATDEYLLVRPDIEESLQSEFETEL-DV-TAVPTTIAGSGTVGSLAVGNENGLLVTERVTDRERDRLETETGLPVV--ELPGNINAAGNVVLANNEGAFVHPDLSRDALSAIEEALSVPVERGRIADVQTVGT 145
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_METMA (Translation initiation factor 6 OS=Methanosarcina mazei GN=eif6 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13 Identity = 53/137 (38.69%), Postives = 75/137 (54.74%), Query Frame = 2 Query: 233 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVG 643 +GVF+ T LV + E E DV VV+T I G+ ++G L GN NG LLP+ ++ +E+Q R +P + + +RL+A+GN + ND AL H +L E+IA L VEV+R TIAG VG Sbjct: 13 IGVFATCTEDLALVPPLTKPEVCTILE-EALDV-RVVETLINGSTVVGALSRGNSNGFLLPYGSSVEEMQK-RTGVPAGI----LPDRLNAVGNIVLANDSAALVHPELSDRALEIIARTLKVEVYRGTIAGIKNVG 142
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_HALWD (Translation initiation factor 6 OS=Haloquadratum walsbyi (strain DSM 16790) GN=eif6 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13 Identity = 50/147 (34.01%), Postives = 71/147 (48.30%), Query Frame = 2 Query: 206 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 646 R F S VGVF++ T+ L+ + AEL P V T+IGG+ +G L GN+NG+L+ T +E + + + V V + R++A GN I ND+ A H DL E E I L V V R +A VG+ Sbjct: 3 RASFAGSPYVGVFARATDDVLLLRSDVDDDTADAMAAELD--IPAVATTIGGSGTVGALATGNENGILVTSNVTMREKEAIETTA--SVSVTELPGRINAAGNVILANDYGAYVHPDLSTEAVESIESALNVPVARGKLADVRTVGT 145
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_NITMS (Translation initiation factor 6 OS=Nitrosopumilus maritimus (strain SCM1) GN=eif6 PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12 Identity = 50/134 (37.31%), Postives = 72/134 (53.73%), Query Frame = 2 Query: 233 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPV--VKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAG 628 +GV+ + + L+ +G F T +LA V + TSI TR+IG LC N G+LLP T E L+ L +V V ++ +L+ALGN I ND A+ L +E + I+DVLGVE ++ IAG Sbjct: 14 IGVYISVNDNTILLPMG----FAKTKAEKLAKYLGVNYLFTSIANTRLIGALCIMNNKGILLPKTAYQNEFDFLKKELDLEVGV--LDSKLTALGNVICANDKGAVVSPWLSKEDCQTISDVLGVETIQKKIAG 141 The following BLAST results are available for this feature:
BLAST of FC920236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 33
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920236 ID=FC920236; Name=FC920236; organism=Citrus clementina; type=EST; length=724bpback to top |