FC920236

Overview
NameFC920236
Unique NameFC920236
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14293 contig Ccv1_Contig14293:154..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_METB6 (Translation initiation factor 6 OS=Methanoregula boonei (strain 6A8) GN=eif6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 46/138 (33.33%), Postives = 65/138 (47.10%), Query Frame = 2
Query:  215 FENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAG 628
            F     +GVF+++     ++     E F +     L     ++ T+I G+ IIG L AGN  GL++    TD+EL  L+        V  + E ++A GN I  ND  A  H DL  E  E I   LGVEV   T+ G
Sbjct:    7 FAGDPNIGVFARVAGNIAVIPPEAPEEFRNAIREGLG--VELLVTTIQGSAIIGSLVAGNSRGLVVSGLATDEELAVLKKHRK----VMLLCETMNAAGNVIMANDTFAAVHPDLPAEVAEEIGAFLGVEVIHLTLGG 138          
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_METAC (Translation initiation factor 6 OS=Methanosarcina acetivorans GN=eif6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 49/137 (35.77%), Postives = 72/137 (52.55%), Query Frame = 2
Query:  233 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVG 643
            +GVF+  T    LV         +  E E+ DV  V++T + G+ ++G L  GN NG +LP+     E+Q   +     + V  + +RL+A+GN +  ND  AL H DL  +  E IA  L V+V+R TIAG   VG
Sbjct:   13 IGVFATCTEDVVLVPPLTKPEVCALLE-EVLDV-RVIETLVNGSIVVGALSRGNSNGFMLPYGAR-AEMQRFTD-----IPVGILPDRLNAVGNIVFANDSAALVHPDLSDKALEAIARTLKVDVYRGTIAGIKNVG 141          
BLAST of FC920236 vs. ExPASy Swiss-Prot
Match: IF6_PICTO (Translation initiation factor 6 OS=Picrophilus torridus GN=eif6 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 47/150 (31.33%), Postives = 74/150 (49.33%), Query Frame = 2
Query:  197 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVFPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGS 646
            M  ++   NS  +GV+++  N    + +  S+     FE  L     V K SIG + +IG + + N NG+++     D  + +L++   +   +  I  +L+A GN I  NDH AL H        + I DVLGVE  + +IAG   VGS
Sbjct:    1 MIKKVSILNSNFIGVYARTWNDVTFLPVNISDEEKRIFEETLKT--EVYKISIGNSFLIGSMLSMNSNGIVV----ADHGIDNLKSLNINGRNILSINNKLNAAGNNIIANDHAALIHKSFPDSIRKKIEDVLGVETVKGSIAGIKTVGS 144          
The following BLAST results are available for this feature:
BLAST of FC920236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
IF6_METB63.059e-1133.33Translation initiation factor 6 OS=Methanoregula b... [more]
IF6_METAC3.059e-1135.77Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_PICTO8.902e-1131.33Translation initiation factor 6 OS=Picrophilus tor... [more]

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Properties
Property NameValue
Genbank descriptionC32005G01EF RVDevelop1 Citrus clementina cDNA clone C32005G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920236 ID=FC920236; Name=FC920236; organism=Citrus clementina; type=EST; length=724bp
GATAGAAAGTAGGAAGCAGAAACCCTCTTCTCATCTCATATTGGGTGGGG
TACTGGGGTTTGTTTCCGGCCGAAAGGGTAGCAAGTGAAGGGCCGCCTCA
TCATCATTATCATCAGCGCTTTGGCATTTCGAGTTTTCGACATCGTTTTC
CGTCATTTTGCTTTTTAATCAATTCAATTTCTGTCAATCTGTAATCATGG
CAACCAGGCTTATGTTTGAGAATTCATGTGAGGTTGGTGTGTTTTCCAAG
CTCACTAATGCTTATTGCTTGGTTGCAATAGGAGGTTCTGAAAGCTTCTA
CAGCACATTTGAGGCTGAGTTAGCAGATGTTTTTCCTGTTGTTAAAACAT
CTATTGGTGGCACTAGGATTATCGGCCGGCTTTGTGCTGGAAACAAAAAT
GGGCTTCTCTTGCCGCACACTACCACAGACCAAGAACTTCAACACTTGAG
GAACAGCCTACCTGATCAAGTTGTCGTTCAGCGTATTGAAGAGAGGCTAT
CTGCCCTGGGCAACTGTATAGCATGCAACGACCATGTTGCTCTTACACAC
ACAGATCTTGACAGGGAAACAGAGGAAATGATTGCAGATGTTCTTGGAGT
AGAAGTTTTTAGGCAGACAATTGCTGGTAATATCCTTGTTGGCAGTTACT
GTTCCTTCTCCACAGAGGAGGCTTGGTTCACCTCACACATCCATTGAGGA
CTTGGATGAAACTTCACTCTCTTG
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