FC920240

Overview
NameFC920240
Unique NameFC920240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920240_ssr3 microsatellite FC920240_ssr3:3..44. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14105 contig Ccv1_Contig14105:1..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920240 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSJ (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. japonica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 4.000e-113
Identity = 194/218 (88.99%), Postives = 198/218 (90.83%), Query Frame = 1 
Query:  103 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 756
            MALP+Q TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE+ AL PPEV ID               +QPLPDDDDD
Sbjct:    1 MALPNQGTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVEAVALKPPEVPIDLAMQQQHEAELAAAAAQPLPDDDDD 218
[Close]
BLAST of FC920240 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSI (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. indica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 407.527 bits (1046), Expect = 4.000e-113
Identity = 194/218 (88.99%), Postives = 198/218 (90.83%), Query Frame = 1 
Query:  103 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 756
            MALP+Q TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT+RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE+ AL PPEV ID               +QPLPDDDDD
Sbjct:    1 MALPNQGTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVEAVALKPPEVPIDLAMQQQHEAELAAAAAQPLPDDDDD 218
[Close]
BLAST of FC920240 vs. ExPASy Swiss-Prot
Match: RAN1B_LOTJA (GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus GN=RAN1B PE=2 SV=1)

HSP 1 Score: 404.06 bits (1037), Expect = 4.423e-112
Identity = 192/208 (92.31%), Postives = 193/208 (92.79%), Query Frame = 1 
Query:  139 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAF 762
            +FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID               SQPLPDDDDDAF
Sbjct:    1 NFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAF 208
[Close]
BLAST of FC920240 vs. ExPASy Swiss-Prot
Match: RAN1A_LOTJA (GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus GN=RAN1A PE=2 SV=1)

HSP 1 Score: 404.06 bits (1037), Expect = 4.423e-112
Identity = 192/208 (92.31%), Postives = 193/208 (92.79%), Query Frame = 1 
Query:  139 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAF 762
            +FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID               SQPLPDDDDDAF
Sbjct:    1 NFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAQAASQPLPDDDDDAF 208
[Close]
BLAST of FC920240 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSJ (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. japonica GN=RAN3 PE=2 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 8.098e-98
Identity = 167/221 (75.57%), Postives = 184/221 (83.26%), Query Frame = 1 
Query:   94 TQLMALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 756
            ++  ALP    V YPSFKL++VGDGGTGKTTFVKRH+TGEFEK+YEPTIGVEV PLDF T+ GK+RF CWDTAGQEKFGGLRDGYYIHG CAIIMFDVT+RLTYKNVPTWH+D+CRVC+NIPIVLCGNKVD+KNRQVKAK VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL GD NL FVE  AL P +V ID               + PLPD+D+D
Sbjct:    2 SRAQALPDPAAVGYPSFKLILVGDGGTGKTTFVKRHITGEFEKRYEPTIGVEVRPLDFHTSRGKVRFCCWDTAGQEKFGGLRDGYYIHGHCAIIMFDVTSRLTYKNVPTWHKDICRVCDNIPIVLCGNKVDMKNRQVKAKMVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLTGDMNLRFVEELALLPADVTIDLIAQQKIETEIAAAAAMPLPDEDED 222
[Close]
BLAST of FC920240 vs. ExPASy Swiss-Prot
Match: RAN3_ORYSI (GTP-binding nuclear protein Ran-3 OS=Oryza sativa subsp. indica GN=RAN3 PE=2 SV=2)

HSP 1 Score: 356.681 bits (914), Expect = 8.098e-98
Identity = 167/221 (75.57%), Postives = 184/221 (83.26%), Query Frame = 1 
Query:   94 TQLMALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 756
            ++  ALP    V YPSFKL++VGDGGTGKTTFVKRH+TGEFEK+YEPTIGVEV PLDF T+ GK+RF CWDTAGQEKFGGLRDGYYIHG CAIIMFDVT+RLTYKNVPTWH+D+CRVC+NIPIVLCGNKVD+KNRQVKAK VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL GD NL FVE  AL P +V ID               + PLPD+D+D
Sbjct:    2 SRAQALPDPAAVGYPSFKLILVGDGGTGKTTFVKRHITGEFEKRYEPTIGVEVRPLDFHTSRGKVRFCCWDTAGQEKFGGLRDGYYIHGHCAIIMFDVTSRLTYKNVPTWHKDICRVCDNIPIVLCGNKVDMKNRQVKAKMVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLTGDMNLRFVEELALLPADVTIDLIAQQKIETEIAAAAAMPLPDEDED 222
[Close]
BLAST of FC920240 vs. ExPASy Swiss-Prot
Match: GSP2_YEAST (GTP-binding nuclear protein GSP2/CNR2 OS=Saccharomyces cerevisiae GN=GSP2 PE=1 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 2.438e-94
Identity = 163/217 (75.12%), Postives = 182/217 (83.87%), Query Frame = 1 
Query:  103 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDD 753
            M+ P+Q   + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F+TN G+I+F  WDTAGQEKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D               + PLPD+DD
Sbjct:    1 MSAPAQNNAEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMHQYQQEMDQATALPLPDEDD 217
[Close]
BLAST of FC920240 vs. ExPASy Swiss-Prot
Match: RAN_CAEEL (GTP-binding nuclear protein ran-1 OS=Caenorhabditis elegans GN=ran-1 PE=1 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 1.024e-92
Identity = 163/207 (78.74%), Postives = 174/207 (84.06%), Query Frame = 1 
Query:  136 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDD 756
            P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G+IRF  WDTAGQEKFGGLRDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEVQ+D                  LPDDDDD
Sbjct:    8 PTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQMDPAMIAEYEKDLDNAAKADLPDDDDD 214
[Close]
BLAST of FC920240 vs. ExPASy Swiss-Prot
Match: GSP1_YEAST (GTP-binding nuclear protein GSP1/CNR1 OS=Saccharomyces cerevisiae GN=GSP1 PE=1 SV=1)

HSP 1 Score: 338.191 bits (866), Expect = 2.980e-92
Identity = 160/208 (76.92%), Postives = 177/208 (85.10%), Query Frame = 1 
Query:  130 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDD 753
            + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F+TN G+I+F  WDTAGQEKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D               + PLPD+DD
Sbjct:    9 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQEMEQATALPLPDEDD 216
[Close]
BLAST of FC920240 vs. ExPASy Swiss-Prot
Match: GSP1_ASHGO (GTP-binding nuclear protein GSP1/Ran OS=Ashbya gossypii GN=GSP1 PE=3 SV=1)

HSP 1 Score: 335.495 bits (859), Expect = 1.932e-91
Identity = 159/208 (76.44%), Postives = 176/208 (84.62%), Query Frame = 1 
Query:  130 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDD 753
            + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F+TN G+I+F  WDTAGQEKFGGLRDGYYI+ QC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D               + PLPD+DD
Sbjct:    4 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLAFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLDFVASPALAPPEVQVDEQLMQQYQQEMERATALPLPDEDD 211
The following BLAST results are available for this feature:
BLAST of FC920240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAN2_ORYSJ4.000e-11388.99GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAN2_ORYSI4.000e-11388.99GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAN1B_LOTJA4.423e-11292.31GTP-binding nuclear protein Ran1B (Fragment) OS=Lo... [more]
RAN1A_LOTJA4.423e-11292.31GTP-binding nuclear protein Ran1A (Fragment) OS=Lo... [more]
RAN3_ORYSJ8.098e-9875.57GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
RAN3_ORYSI8.098e-9875.57GTP-binding nuclear protein Ran-3 OS=Oryza sativa ... [more]
GSP2_YEAST2.438e-9475.12GTP-binding nuclear protein GSP2/CNR2 OS=Saccharom... [more]
RAN_CAEEL1.024e-9278.74GTP-binding nuclear protein ran-1 OS=Caenorhabditi... [more]
GSP1_YEAST2.980e-9276.92GTP-binding nuclear protein GSP1/CNR1 OS=Saccharom... [more]
GSP1_ASHGO1.932e-9176.44GTP-binding nuclear protein GSP1/Ran OS=Ashbya gos... [more]

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Properties
Property NameValue
Genbank descriptionC32005G06EF RVDevelop1 Citrus clementina cDNA clone C32005G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920240 ID=FC920240; Name=FC920240; organism=Citrus clementina; type=EST; length=762bp
GGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCTCAC
TTCTGTGTTCAGACCGCGAACTTCGTATTCTTTCGCACACAGTACTCAAC
TCATGGCTCTGCCAAGTCAGCAAACTGTTGATTACCCGAGCTTCAAACTC
GTCATAGTCGGCGACGGTGGCACTGGGAAGACTACCTTTGTGAAGAGGCA
TCTGACTGGGGAGTTTGAGAAGAAGTATGAACCAACTATTGGTGTGGAGG
TTCATCCGTTGGATTTCTTTACAAATTGTGGCAAAATCCGTTTCTACTGC
TGGGACACTGCTGGCCAGGAAAAGTTTGGTGGTCTTAGAGATGGTTATTA
CATCCATGGGCAATGTGCCATCATTATGTTTGATGTTACTGCCCGATTGA
CATACAAGAATGTTCCCACTTGGCACCGTGATCTTTGCCGGGTGTGTGAA
AATATACCGATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAATAGGCA
AGTCAAGGCAAAGCAGGTTACCTTCCACAGGAAGAAGAATCTACAGTACT
ATGAGATTTCTGCCAAGAGCAACTACAATTTTGAGAAACCTTTCTTGTAC
CTTGCCAGGAAGCTTGCTGGGGACCCAAATTTGCACTTCGTGGAATCTCC
TGCTCTCGCTCCTCCAGAAGTACAGATTGACTTAGCTGCACAGCAACAAC
ATGAAGCCGAGCTTGCCGCAGCAGCTAGCCAGCCTCTTCCTGATGACGAT
GATGATGCATTT
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