FC920241

Overview
NameFC920241
Unique NameFC920241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11415 contig Ccv1_Contig11415:76..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920241 vs. ExPASy Swiss-Prot
Match: CSN6_PONAB (COP9 signalosome complex subunit 6 OS=Pongo abelii GN=COPS6 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 50/208 (24.04%), Postives = 104/208 (50.00%), Query Frame = 1
Query:   70 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYL 681
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R     +   ST+A  +  + +A+K L +R++ I  Y+
Sbjct:   42 VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYV 243          
BLAST of FC920241 vs. ExPASy Swiss-Prot
Match: CSN6_PIG (COP9 signalosome complex subunit 6 OS=Sus scrofa GN=COPS6 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 50/208 (24.04%), Postives = 104/208 (50.00%), Query Frame = 1
Query:   70 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYL 681
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R     +   ST+A  +  + +A+K L +R++ I  Y+
Sbjct:   37 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYV 238          
BLAST of FC920241 vs. ExPASy Swiss-Prot
Match: CSN6_MOUSE (COP9 signalosome complex subunit 6 OS=Mus musculus GN=Cops6 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 50/208 (24.04%), Postives = 104/208 (50.00%), Query Frame = 1
Query:   70 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYL 681
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R     +   ST+A  +  + +A+K L +R++ I  Y+
Sbjct:   38 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYV 239          
BLAST of FC920241 vs. ExPASy Swiss-Prot
Match: CSN6_HUMAN (COP9 signalosome complex subunit 6 OS=Homo sapiens GN=COPS6 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 50/208 (24.04%), Postives = 104/208 (50.00%), Query Frame = 1
Query:   70 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYL 681
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R     +   ST+A  +  + +A+K L +R++ I  Y+
Sbjct:   41 VALHPLVILNISDHWIRMRSQEGRPVQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYV 242          
BLAST of FC920241 vs. ExPASy Swiss-Prot
Match: CSN6_BOVIN (COP9 signalosome complex subunit 6 OS=Bos taurus GN=COPS6 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 50/208 (24.04%), Postives = 104/208 (50.00%), Query Frame = 1
Query:   70 VIVHPLVLLSIVDNYNRVAKDTRK--RVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPNPVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTT--ISTLANEVTGKLTALKGLDARLREIRGYL 681
            V +HPLV+L+I D++ R+     +  +V+G L+G      ++V NS+ +     ++      +D  Y+ +    FK++  +   +GWY+TG     +D+ +H+     + +P+ + ++   K   +P   +   E V +    ++  +F  +   +A  E E IGV+H+ R     +   ST+A  +  + +A+K L +R++ I  Y+
Sbjct:   38 VALHPLVILNISDHWIRMRSQEGRPMQVIGALIGKQEGRNIEVMNSFELLSHTVEEKI---IIDKEYYYTKEEQFKQVFKELDFLGWYTTGGPPDPSDIHVHKQVCEIIESPLFLKLNPMTKHTDLPVSVF---ESVIDIINGEATMLFAELTYTLATEEAERIGVDHVARMTATGSGENSTVAEHLIAQHSAIKMLHSRVKLILEYV 239          
BLAST of FC920241 vs. ExPASy Swiss-Prot
Match: EI3F2_DROAN (Eukaryotic translation initiation factor 3 subunit F-2 OS=Drosophila ananassae GN=eIF3-S5-2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 57/208 (27.40%), Postives = 98/208 (47.12%), Query Frame = 1
Query:   67 KVIVHPLVLLSIVDNYNRVAKDTRKRVVGVLLGSSFKGTVDVSNSYAVPFEEDDKDPGIWFLDHNYHESMYSMFKRINAKEHVVGWYSTGPKLRENDLDIHQLFHNYVPN--PVLVIIDVQPKELGIPTKAYYDVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLANEVTGKLTALKGLDARLREIRGYLD 684
            KV++ PLVL  I+D+Y R  KD   +++G LLG S    + ++N + V   ++  D     LD  Y   M  + +    +E V+GW+STG  +  + L +H  +     +  P+ +++D   K   + T+ Y  VE      T+    +F  VP E+A+   E +     LR ++   +   A +V   L  L  +    RE++  LD
Sbjct:   10 KVVLQPLVLFQIIDSYERRPKDA-TQIIGTLLGRSNGKEITITNCFTV-LHKEHPDSARIDLDLGYANDMLELNQLTYPQEKVLGWFSTGKSVSRSALLLHDYYSRECSDGQPLHLLVDATLKGQRLSTRLYCGVEMGVPGGTK--GLMFSLVPLEMASDSAEMVA----LRLMQKQNLQPGAKQVGRILPELVQVVEATRELQLRLD 209          
The following BLAST results are available for this feature:
BLAST of FC920241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CSN6_PONAB1.334e-1324.04COP9 signalosome complex subunit 6 OS=Pongo abelii... [more]
CSN6_PIG1.334e-1324.04COP9 signalosome complex subunit 6 OS=Sus scrofa G... [more]
CSN6_MOUSE1.334e-1324.04COP9 signalosome complex subunit 6 OS=Mus musculus... [more]
CSN6_HUMAN1.334e-1324.04COP9 signalosome complex subunit 6 OS=Homo sapiens... [more]
CSN6_BOVIN1.743e-1324.04COP9 signalosome complex subunit 6 OS=Bos taurus G... [more]
EI3F2_DROAN1.631e-1127.40Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC32005G07EF RVDevelop1 Citrus clementina cDNA clone C32005G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920241 ID=FC920241; Name=FC920241; organism=Citrus clementina; type=EST; length=686bp
GAAACACAGAGAGATTCGAATATGGACGTGATAAAGACGCAGCAAATTTC
ATCGAGACCCATAGAGAAGGTCATAGTTCACCCGCTCGTCTTACTAAGCA
TCGTCGACAATTACAACCGCGTCGCCAAGGACACGCGCAAGCGCGTCGTC
GGCGTCCTCCTCGGTAGCTCCTTCAAAGGCACCGTCGATGTCTCCAACAG
CTACGCAGTGCCTTTTGAGGAAGATGACAAAGACCCAGGAATATGGTTTC
TCGACCACAACTACCATGAATCAATGTATTCAATGTTCAAAAGAATCAAT
GCCAAGGAGCATGTCGTAGGTTGGTACAGTACAGGACCCAAGCTACGAGA
GAATGATCTTGACATTCACCAATTATTTCACAACTATGTCCCAAATCCTG
TATTGGTCATTATTGATGTCCAACCAAAGGAGCTTGGAATACCCACCAAG
GCTTACTATGATGTTGAGGAGGTTAAAGAGAATGCTACTCAGAAAAGCCA
AAAGGTCTTTGTACACGTGCCATCAGAAATTGCCGCTCATGAAGTCGAAG
AAATCGGAGTGGAGCACTTGCTAAGGGACGTGAAAGACACCACCATCAGT
ACACTTGCAAATGAGGTCACTGGAAAACTTACAGCCCTAAAGGGTCTGGA
TGCTCGTTTGCGTGAGATCCGTGGTTACCTTGACCT
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