FC920242 | Citrus Genome Database

Overview


Name	FC920242
Unique Name	FC920242
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	686

Libraries


Library Name	Type
RVDevelop1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig3443	contig	Ccv1_Contig3443:1..673.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA2_STYLE (Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.031e-98
Identity = 173/211 (81.99%), Postives = 185/211 (87.68%), Query Frame = 3

Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRE ISIH+G AGIQVGNACWEL+CLEHGIQPDGQM S+KT+GGGDDAFNTFFSETG GKHVPR VFLDL PTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD IRKLAD CTGLQGFLVF++V                 VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDV+V+LDNE++YD
Sbjct:    1 MREVISIHVGQAGIQVGNACWELFCLEHGIQPDGQMPSNKTIGGGDDAFNTFFSETGTGKHVPRCVFLDLGPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDGIRKLADQCTGLQGFLVFNSVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYD 211

[Close]

BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA1_NAEGR (Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=TBA1 PE=2 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 1.031e-98
Identity = 174/211 (82.46%), Postives = 186/211 (88.15%), Query Frame = 3

Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRE ISIHIG AG+QVGNACWELYCLEHGIQPDG M SDKT+G  DDAFNTFFSETGAGKHVPRAVFLDLEPTV+DEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF +V                 VDYGKKSKLGFTVYPSPQV+T+VVEPYNSVLSTH+LLEHTDV+V+LDNE+IYD
Sbjct:    1 MREVISIHIGQAGVQVGNACWELYCLEHGIQPDGLMPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFSSVGGGTGSGLGALLLERLSVDYGKKSKLGFTVYPSPQVATAVVEPYNSVLSTHALLEHTDVAVMLDNEAIYD 211

[Close]

BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA_TRYCR (Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.346e-98
Identity = 173/211 (81.99%), Postives = 184/211 (87.20%), Query Frame = 3

Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRE I IHIG AG QVGNACWEL+CLEHGIQPDG M SDKT+G  DDAFNTFFSETGAGKHVPRAVFLDLEPTV+DE+RTG YRQLFHPEQLISGKEDAANN+ARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLV+HAV                 VDYGKKSKLG+TVYPSPQVST+VVEPYNSVLSTHSLLEHTDV+ +LDNE+IYD
Sbjct:    1 MREAICIHIGQAGCQVGNACWELFCLEHGIQPDGAMPSDKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEIRTGTYRQLFHPEQLISGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVYHAVGGGTGSGLGALLLERLSVDYGKKSKLGYTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAAMLDNEAIYD 211

[Close]

BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBAD_PHYPO (Tubulin alpha-1A chain OS=Physarum polycephalum GN=ALTA PE=1 SV=1)

HSP 1 Score: 358.992 bits (920), Expect = 1.346e-98
Identity = 175/211 (82.94%), Postives = 184/211 (87.20%), Query Frame = 3

Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRE ISIHIG AG QVGNACWELYCLEHGIQPDGQM SDK+VG GDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDLCLDR+RKLAD CTGLQGFLVFH+V                 VDYGKKSKL F VYPSPQVST+VVEPYNSVLSTHSLLEHTDV+ +LDNE+IYD
Sbjct:    1 MREVISIHIGQAGTQVGNACWELYCLEHGIQPDGQMPSDKSVGYGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLCLDRVRKLADQCTGLQGFLVFHSVGGGTGSGFGSLLLERLSVDYGKKSKLDFCVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAFMLDNEAIYD 211

[Close]

BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA6_MAIZE (Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 2.998e-98
Identity = 173/211 (81.99%), Postives = 186/211 (88.15%), Query Frame = 3

Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRE ISIHIG AGIQVGNACWELYCLEHGI+PDG M SD +VG   DAFNTFFSETG+GKHVPRA+F+DLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDV+VLLDNE+IYD
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYD 211

[Close]

BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA3_ELEIN (Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 2.998e-98
Identity = 173/211 (81.99%), Postives = 186/211 (88.15%), Query Frame = 3

Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRE ISIHIG AGIQVGNACWELYCLEHGI+PDG M SD +VG   DAFNTFFSETG+GKHVPRA+F+DLEPTVIDEVRTG+YRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDV+VLLDNE+IYD
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGIEPDGTMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYD 211

[Close]

BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA1_HORVU (Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 357.836 bits (917), Expect = 2.998e-98
Identity = 175/211 (82.94%), Postives = 184/211 (87.20%), Query Frame = 3

Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRE ISIHIG AGIQVGNACWELYCLEHGI  DG M SD TVG   DAFNTFFSETGAGKHVPRA+F+DLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKLADNCTGLQGFLVF+AV                 VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDV+VLLDNE+IYD
Sbjct:    1 MREIISIHIGQAGIQVGNACWELYCLEHGINQDGTMPSDTTVGVAHDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYD 211

[Close]

BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA13_NAEGR (Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUBA13 PE=2 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 5.115e-98
Identity = 173/211 (81.99%), Postives = 185/211 (87.68%), Query Frame = 3

Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRE ISIHIG AG+QVGNACWELYCLEHGIQPDG M S KT+G  DDAFNTFFSETGAGKHVPRAVFLDLEPTV+DEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVF +V                 VDYGKKSKLGFTVYPSPQV+T+VVEPYNSVLSTH+LLEHTDV+V+LDNE+IYD
Sbjct:    1 MREVISIHIGQAGVQVGNACWELYCLEHGIQPDGLMPSSKTIGVEDDAFNTFFSETGAGKHVPRAVFLDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFSSVGGGTGSGLGALLLERLSVDYGKKSKLGFTVYPSPQVATAVVEPYNSVLSTHALLEHTDVAVMLDNEAIYD 211

[Close]

BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA_EUPVA (Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 8.724e-98
Identity = 171/211 (81.04%), Postives = 184/211 (87.20%), Query Frame = 3

Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRE IS+HIG  GIQVGNACWEL+CLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPRAV +DLEPTV DE+RTG YRQLFHPEQ+ISGKEDAANNFARGHYTIGKEIVDL LDRIRKLADNCTGLQGF+ FH+V                 VDYGKKSKL FTVYPSPQVST+VVEPYNSVLSTHSLLEHTDV+V+LDNE++YD
Sbjct:    1 MREVISVHIGQGGIQVGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVLVDLEPTVCDEIRTGTYRQLFHPEQIISGKEDAANNFARGHYTIGKEIVDLVLDRIRKLADNCTGLQGFIGFHSVGGGTGSGLGSLLLERLSVDYGKKSKLCFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAVYD 211

[Close]

BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA_TOXGO (Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.139e-97
Identity = 172/211 (81.52%), Postives = 184/211 (87.20%), Query Frame = 3

Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRE ISIH+G AGIQ+GNACWEL+CLEHGIQPDGQM SDKT+GGGDDAFNTFFSETGAGKHVPR VFLDLEPTV+DEVRTG YR LFHPEQLISGKEDAANNFARGHYTIGKEIVDL LDRIRKLADNCTGLQGFL+F+AV                 VDYGKKSKL F  +PSPQVST+VVEPYNSVLSTHSLLEHTDV+V+LDNE+IYD
Sbjct:    1 MREVISIHVGQAGIQIGNACWELFCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRCVFLDLEPTVVDEVRTGTYRHLFHPEQLISGKEDAANNFARGHYTIGKEIVDLSLDRIRKLADNCTGLQGFLMFNAVGGGTGSGLGCLLLERLSVDYGKKSKLNFCSWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYD 211

The following BLAST results are available for this feature:

BLAST of FC920242 vs. ExPASy Swiss-Prot

BLAST of FC920242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415


Match Name	E-value	Identity	Description
TBA2_STYLE	1.031e-98	81.99	Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 S...	[more]
TBA1_NAEGR	1.031e-98	82.46	Tubulin alpha-1/2/3 chain OS=Naegleria gruberi GN=...	[more]
TBA_TRYCR	1.346e-98	81.99	Tubulin alpha chain OS=Trypanosoma cruzi PE=3 SV=1	[more]
TBAD_PHYPO	1.346e-98	82.94	Tubulin alpha-1A chain OS=Physarum polycephalum GN...	[more]
TBA6_MAIZE	2.998e-98	81.99	Tubulin alpha-6 chain OS=Zea mays GN=TUBA6 PE=2 SV...	[more]
TBA3_ELEIN	2.998e-98	81.99	Tubulin alpha-3 chain OS=Eleusine indica GN=TUBA3 ...	[more]
TBA1_HORVU	2.998e-98	82.94	Tubulin alpha-1 chain OS=Hordeum vulgare GN=TUBA1 ...	[more]
TBA13_NAEGR	5.115e-98	81.99	Tubulin alpha-13 chain OS=Naegleria gruberi GN=TUB...	[more]
TBA_EUPVA	8.724e-98	81.04	Tubulin alpha chain OS=Euplotes vannus PE=3 SV=1	[more]
TBA_TOXGO	1.139e-97	81.52	Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C32005G08EF RVDevelop1 Citrus clementina cDNA clone C32005G08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC920242 ID=FC920242; Name=FC920242; organism=Citrus clementina; type=EST; length=686bp
GCAGAATAATCTCGCAATTCCCTGCCTCAAATCTCTAACAAAATCACACA
AGAATGAGAGAATGCATCTCAATTCACATCGGCCACGCCGGTATCCAGGT
TGGTAATGCCTGCTGGGAGCTCTATTGCCTCGAACATGGCATTCAGCCTG
ATGGGCAAATGTTAAGTGACAAAACAGTCGGAGGCGGAGATGATGCTTTC
AACACATTCTTCAGTGAGACCGGCGCCGGAAAGCACGTGCCACGCGCCGT
GTTTTTGGACCTTGAACCAACTGTAATCGATGAAGTGAGGACTGGCGCCT
ACCGTCAGTTATTTCACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCT
GCTAACAACTTTGCCAGAGGTCACTACACAATTGGGAAAGAGATTGTGGA
TTTGTGCCTTGATAGGATCAGGAAGTTAGCTGATAACTGTACCGGTCTAC
AAGGGTTCCTCGTGTTCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTC
GGGTCTTTGCTCCTTGAGAGGCTGTCTGTTGATTACGGCAAGAAATCGAA
ACTGGGATTTACCGTTTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTG
AGCCTTACAACAGCGTTTTGTCCACTCACTCTCTGTTAGAACACACTGAC
GTTTCTGTGTTGCTTGACAATGAAAGCATCTACGAT