FC920242

Overview
NameFC920242
Unique NameFC920242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3443 contig Ccv1_Contig3443:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA1C_MOUSE (Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c PE=1 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 8.165e-96
Identity = 162/211 (76.78%), Postives = 184/211 (87.20%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIH+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA1C_HUMAN (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 8.165e-96
Identity = 162/211 (76.78%), Postives = 184/211 (87.20%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIH+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA1C_CRIGR (Tubulin alpha-1C chain OS=Cricetulus griseus GN=TUBA1C PE=2 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 8.165e-96
Identity = 162/211 (76.78%), Postives = 184/211 (87.20%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIH+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA1B_RAT (Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tuba1b PE=1 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 8.165e-96
Identity = 162/211 (76.78%), Postives = 184/211 (87.20%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIH+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA1B_PIG (Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 8.165e-96
Identity = 162/211 (76.78%), Postives = 184/211 (87.20%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIH+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA1B_PANTR (Tubulin alpha-1B chain OS=Pan troglodytes GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 8.165e-96
Identity = 162/211 (76.78%), Postives = 184/211 (87.20%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIH+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA1B_MOUSE (Tubulin alpha-1B chain OS=Mus musculus GN=Tuba1b PE=1 SV=2)

HSP 1 Score: 349.747 bits (896), Expect = 8.165e-96
Identity = 162/211 (76.78%), Postives = 184/211 (87.20%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIH+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA1B_MERUN (Tubulin alpha-1B chain OS=Meriones unguiculatus GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 8.165e-96
Identity = 162/211 (76.78%), Postives = 184/211 (87.20%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIH+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA1B_MACFA (Tubulin alpha-1B chain OS=Macaca fascicularis GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 8.165e-96
Identity = 162/211 (76.78%), Postives = 184/211 (87.20%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIH+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA1B_HUMAN (Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B PE=1 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 8.165e-96
Identity = 162/211 (76.78%), Postives = 184/211 (87.20%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIH+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
The following BLAST results are available for this feature:
BLAST of FC920242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415
Match NameE-valueIdentityDescription
TBA1C_MOUSE8.165e-9676.78Tubulin alpha-1C chain OS=Mus musculus GN=Tuba1c P... [more]
TBA1C_HUMAN8.165e-9676.78Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
TBA1C_CRIGR8.165e-9676.78Tubulin alpha-1C chain OS=Cricetulus griseus GN=TU... [more]
TBA1B_RAT8.165e-9676.78Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tub... [more]
TBA1B_PIG8.165e-9676.78Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=... [more]
TBA1B_PANTR8.165e-9676.78Tubulin alpha-1B chain OS=Pan troglodytes GN=TUBA1... [more]
TBA1B_MOUSE8.165e-9676.78Tubulin alpha-1B chain OS=Mus musculus GN=Tuba1b P... [more]
TBA1B_MERUN8.165e-9676.78Tubulin alpha-1B chain OS=Meriones unguiculatus GN... [more]
TBA1B_MACFA8.165e-9676.78Tubulin alpha-1B chain OS=Macaca fascicularis GN=T... [more]
TBA1B_HUMAN8.165e-9676.78Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B P... [more]

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Properties
Property NameValue
Genbank descriptionC32005G08EF RVDevelop1 Citrus clementina cDNA clone C32005G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920242 ID=FC920242; Name=FC920242; organism=Citrus clementina; type=EST; length=686bp
GCAGAATAATCTCGCAATTCCCTGCCTCAAATCTCTAACAAAATCACACA
AGAATGAGAGAATGCATCTCAATTCACATCGGCCACGCCGGTATCCAGGT
TGGTAATGCCTGCTGGGAGCTCTATTGCCTCGAACATGGCATTCAGCCTG
ATGGGCAAATGTTAAGTGACAAAACAGTCGGAGGCGGAGATGATGCTTTC
AACACATTCTTCAGTGAGACCGGCGCCGGAAAGCACGTGCCACGCGCCGT
GTTTTTGGACCTTGAACCAACTGTAATCGATGAAGTGAGGACTGGCGCCT
ACCGTCAGTTATTTCACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCT
GCTAACAACTTTGCCAGAGGTCACTACACAATTGGGAAAGAGATTGTGGA
TTTGTGCCTTGATAGGATCAGGAAGTTAGCTGATAACTGTACCGGTCTAC
AAGGGTTCCTCGTGTTCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTC
GGGTCTTTGCTCCTTGAGAGGCTGTCTGTTGATTACGGCAAGAAATCGAA
ACTGGGATTTACCGTTTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTG
AGCCTTACAACAGCGTTTTGTCCACTCACTCTCTGTTAGAACACACTGAC
GTTTCTGTGTTGCTTGACAATGAAAGCATCTACGAT
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