FC920242

Overview
NameFC920242
Unique NameFC920242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3443 contig Ccv1_Contig3443:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA1D_BOVIN (Tubulin alpha-1D chain OS=Bos taurus GN=TUBA1D PE=1 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 2.376e-95
Identity = 159/211 (75.36%), Postives = 184/211 (87.20%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECIS+H+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKE++DL LDRIRKLAD CTGLQGFL+FH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKELIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA3_RAT (Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba3a PE=2 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 3.103e-95
Identity = 161/211 (76.30%), Postives = 183/211 (86.73%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIH+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTV+DEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+FH+                  VDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA3_MOUSE (Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE=1 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 3.103e-95
Identity = 161/211 (76.30%), Postives = 183/211 (86.73%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIH+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTV+DEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+FH+                  VDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA3_BOVIN (Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 347.821 bits (891), Expect = 3.103e-95
Identity = 161/211 (76.30%), Postives = 183/211 (86.73%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIH+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTV+DEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+FH+                  VDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA3C_HUMAN (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3)

HSP 1 Score: 347.821 bits (891), Expect = 3.103e-95
Identity = 161/211 (76.30%), Postives = 183/211 (86.73%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIH+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTV+DEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+FH+                  VDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBAT_ONCMY (Tubulin alpha chain, testis-specific OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 4.052e-95
Identity = 159/211 (75.36%), Postives = 183/211 (86.73%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIH+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTV+DEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDR+RKL+D CTGLQGFL+FH+                  VDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA1A_PIG (Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 347.436 bits (890), Expect = 4.052e-95
Identity = 161/211 (76.30%), Postives = 183/211 (86.73%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIH+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTVIDEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIRKLAD CTGLQGF VFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA2_PATVU (Tubulin alpha-2/alpha-4 chain OS=Patella vulgata GN=TUB2 PE=2 SV=1)

HSP 1 Score: 347.051 bits (889), Expect = 5.293e-95
Identity = 158/211 (74.88%), Postives = 183/211 (86.73%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECIS+HIG AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+FNTFFSETGAGKHVPRAVF+DLEPTV+DEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEI+DL LDRIRKLAD CTGLQGFL+FH+                  VDYGKKSKL F +YP+PQ+ST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISVHIGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA_PLAFK (Tubulin alpha chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 6.912e-95
Identity = 166/211 (78.67%), Postives = 180/211 (85.31%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRE ISIH+G AGIQVGNACWEL+CLEHGIQPDGQM SDK     DDAFNTFFSETGAGKHVPR VF+DLEPTV+DEVRTG YRQLFHPEQLISGKEDAANNFARGHYTIGKE++D+CLDRIRKLADNCTGLQGFL+F AV                 VDYGKKSKL F  +PSPQVST+VVEPYNSVLSTHSLLEHTDV+++LDNE+IYD
Sbjct:    1 MREVISIHVGQAGIQVGNACWELFCLEHGIQPDGQMPSDKASRANDDAFNTFFSETGAGKHVPRCVFVDLEPTVVDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEVIDVCLDRIRKLADNCTGLQGFLMFSAVGGGTGSGFGCLMLERLSVDYGKKSKLNFCCWPSPQVSTAVVEPYNSVLSTHSLLEHTDVAIMLDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA_BOMMO (Tubulin alpha chain OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 9.028e-95
Identity = 158/211 (74.88%), Postives = 183/211 (86.73%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECIS+H+G AG+Q+GNACWELYCLEHGIQPDGQM +DKT+GGGDD+FNTFFSETGAGKHVPRA+F+DLEPTV+DEVRTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVDL LDRIRKLAD CTGLQGFL+FH+                  VDYGKKSKL F +YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRALFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
The following BLAST results are available for this feature:
BLAST of FC920242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415
Match NameE-valueIdentityDescription
TBA1D_BOVIN2.376e-9575.36Tubulin alpha-1D chain OS=Bos taurus GN=TUBA1D PE=... [more]
TBA3_RAT3.103e-9576.30Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA3_MOUSE3.103e-9576.30Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE... [more]
TBA3_BOVIN3.103e-9576.30Tubulin alpha-3 chain OS=Bos taurus GN=TUBA3 PE=2 ... [more]
TBA3C_HUMAN3.103e-9576.30Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C... [more]
TBAT_ONCMY4.052e-9575.36Tubulin alpha chain, testis-specific OS=Oncorhynch... [more]
TBA1A_PIG4.052e-9576.30Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=... [more]
TBA2_PATVU5.293e-9574.88Tubulin alpha-2/alpha-4 chain OS=Patella vulgata G... [more]
TBA_PLAFK6.912e-9578.67Tubulin alpha chain OS=Plasmodium falciparum (isol... [more]
TBA_BOMMO9.028e-9574.88Tubulin alpha chain OS=Bombyx mori PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32005G08EF RVDevelop1 Citrus clementina cDNA clone C32005G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920242 ID=FC920242; Name=FC920242; organism=Citrus clementina; type=EST; length=686bp
GCAGAATAATCTCGCAATTCCCTGCCTCAAATCTCTAACAAAATCACACA
AGAATGAGAGAATGCATCTCAATTCACATCGGCCACGCCGGTATCCAGGT
TGGTAATGCCTGCTGGGAGCTCTATTGCCTCGAACATGGCATTCAGCCTG
ATGGGCAAATGTTAAGTGACAAAACAGTCGGAGGCGGAGATGATGCTTTC
AACACATTCTTCAGTGAGACCGGCGCCGGAAAGCACGTGCCACGCGCCGT
GTTTTTGGACCTTGAACCAACTGTAATCGATGAAGTGAGGACTGGCGCCT
ACCGTCAGTTATTTCACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCT
GCTAACAACTTTGCCAGAGGTCACTACACAATTGGGAAAGAGATTGTGGA
TTTGTGCCTTGATAGGATCAGGAAGTTAGCTGATAACTGTACCGGTCTAC
AAGGGTTCCTCGTGTTCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTC
GGGTCTTTGCTCCTTGAGAGGCTGTCTGTTGATTACGGCAAGAAATCGAA
ACTGGGATTTACCGTTTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTG
AGCCTTACAACAGCGTTTTGTCCACTCACTCTCTGTTAGAACACACTGAC
GTTTCTGTGTTGCTTGACAATGAAAGCATCTACGAT
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