FC920242

Overview
NameFC920242
Unique NameFC920242
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3443 contig Ccv1_Contig3443:1..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA_XENTR (Tubulin alpha chain OS=Xenopus tropicalis GN=tuba PE=2 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 2.224e-93
Identity = 158/211 (74.88%), Postives = 181/211 (85.78%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECIS+H+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+F TFFSETGAGKHVPRAVF+DLEPTVIDEVR G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKLAD CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFSETGAGKHVPRAVFVDLEPTVIDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA4A_RAT (Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tuba4a PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 3.211e-92
Identity = 155/211 (73.46%), Postives = 180/211 (85.31%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECIS+H+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+F TFF ETGAGKHVPRAVF+DLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA4A_MOUSE (Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a PE=1 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 3.211e-92
Identity = 155/211 (73.46%), Postives = 180/211 (85.31%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECIS+H+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+F TFF ETGAGKHVPRAVF+DLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA4A_MACFA (Tubulin alpha-4A chain OS=Macaca fascicularis GN=TUBA4A PE=2 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 3.211e-92
Identity = 155/211 (73.46%), Postives = 180/211 (85.31%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECIS+H+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+F TFF ETGAGKHVPRAVF+DLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA4A_HUMAN (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1)

HSP 1 Score: 337.806 bits (865), Expect = 3.211e-92
Identity = 155/211 (73.46%), Postives = 180/211 (85.31%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECIS+H+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+F TFF ETGAGKHVPRAVF+DLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2)

HSP 1 Score: 337.806 bits (865), Expect = 3.211e-92
Identity = 155/211 (73.46%), Postives = 180/211 (85.31%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECIS+H+G AG+Q+GNACWELYCLEHGIQPDGQM SDKT+GGGDD+F TFF ETGAGKHVPRAVF+DLEPTVIDE+R G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEI+D  LDRIRKL+D CTGLQGFLVFH+                  VDYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLDRIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA_ENTDO (Tubulin alpha chain OS=Enteroctopus dofleini PE=2 SV=1)

HSP 1 Score: 334.724 bits (857), Expect = 2.718e-91
Identity = 152/211 (72.04%), Postives = 180/211 (85.31%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIH+G AG+Q+GNACWELYCLEHGIQP GQM SDK VGG DD+FNTFFSETG+GKHVPRAVF+DLEPTV+DE+RTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKE +DL LDR+RKL+D CTGLQGFL+FH+                  VDYGKKSKL F++YP+PQV+T+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPSGQMPSDKAVGGKDDSFNTFFSETGSGKHVPRAVFVDLEPTVVDEIRTGLYRQLFHPEQLITGKEDAANNYARGHYTIGKEHIDLVLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA_HAECO (Tubulin alpha chain OS=Haemonchus contortus PE=2 SV=1)

HSP 1 Score: 333.569 bits (854), Expect = 6.056e-91
Identity = 155/211 (73.46%), Postives = 181/211 (85.78%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRE ISIHIG AG+Q+GNACWELYCLEHGIQPDGQM SDK++GG DD+F+TFFSETG+G+HVPRAV +DLEPTVIDE+RTG YR LFHPEQLI+GKEDAANN+ARGHYTIGKEI+DL LDRIR+LADNCTGLQGFLVFH+                  VDYGKK+KL F+VYP+PQVST+VVEPYNS+L+TH+ LEH+D S ++DNE+IYD
Sbjct:    1 MREVISIHIGQAGVQIGNACWELYCLEHGIQPDGQMPSDKSLGGCDDSFSTFFSETGSGRHVPRAVMIDLEPTVIDEIRTGTYRSLFHPEQLITGKEDAANNYARGHYTIGKEIIDLTLDRIRRLADNCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKAKLEFSVYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA5_CHICK (Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.301e-90
Identity = 152/211 (72.04%), Postives = 176/211 (83.41%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECIS+H+G AG+Q+GN CWELYCLEHGIQPDGQM SDKT+GGGDD+F TFF ETGAGKHVPRA+F+DLEPTVIDEVR G YRQLFHPEQLI+GKED ANN+ARGHYTIGKEI+D  LDRIRKLAD CTGLQGFL FH+                   DYGKKSKL F++YP+PQVST+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISVHVGQAGVQMGNTCWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAIFVDLEPTVIDEVRAGIYRQLFHPEQLITGKEDGANNYARGHYTIGKEIIDQVLDRIRKLADQCTGLQGFLCFHSFGGGTGSGFTSLLMERLSGDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
[Close]
BLAST of FC920242 vs. ExPASy Swiss-Prot
Match: TBA1_HOMAM (Tubulin alpha-1 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 5.126e-90
Identity = 154/211 (72.99%), Postives = 179/211 (84.83%), Query Frame = 3 
Query:   54 MRECISIHIGHAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLLDNESIYD 686
            MRECISIH+G AG+Q+GNA WELYCLEHGIQPD +M SDKTVG  DD+FNTFFSETGAGKHVPRAVF+DLEP+V+DEVR+G YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIVD+ LDRIRKLAD CTGLQGFL+FH+                  VDYGKKSKL F VYP+PQV+T+VVEPYNS+L+TH+ LEH+D + ++DNE+IYD
Sbjct:    1 MRECISIHVGQAGVQMGNAVWELYCLEHGIQPDAKMPSDKTVGVSDDSFNTFFSETGAGKHVPRAVFVDLEPSVVDEVRSGVYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDIVLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYD 211
The following BLAST results are available for this feature:
BLAST of FC920242 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 415
Match NameE-valueIdentityDescription
TBA_XENTR2.224e-9374.88Tubulin alpha chain OS=Xenopus tropicalis GN=tuba ... [more]
TBA4A_RAT3.211e-9273.46Tubulin alpha-4A chain OS=Rattus norvegicus GN=Tub... [more]
TBA4A_MOUSE3.211e-9273.46Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a P... [more]
TBA4A_MACFA3.211e-9273.46Tubulin alpha-4A chain OS=Macaca fascicularis GN=T... [more]
TBA4A_HUMAN3.211e-9273.46Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A P... [more]
TBA4A_BOVIN3.211e-9273.46Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=... [more]
TBA_ENTDO2.718e-9172.04Tubulin alpha chain OS=Enteroctopus dofleini PE=2 ... [more]
TBA_HAECO6.056e-9173.46Tubulin alpha chain OS=Haemonchus contortus PE=2 S... [more]
TBA5_CHICK2.301e-9072.04Tubulin alpha-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBA1_HOMAM5.126e-9072.99Tubulin alpha-1 chain OS=Homarus americanus PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC32005G08EF RVDevelop1 Citrus clementina cDNA clone C32005G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920242 ID=FC920242; Name=FC920242; organism=Citrus clementina; type=EST; length=686bp
GCAGAATAATCTCGCAATTCCCTGCCTCAAATCTCTAACAAAATCACACA
AGAATGAGAGAATGCATCTCAATTCACATCGGCCACGCCGGTATCCAGGT
TGGTAATGCCTGCTGGGAGCTCTATTGCCTCGAACATGGCATTCAGCCTG
ATGGGCAAATGTTAAGTGACAAAACAGTCGGAGGCGGAGATGATGCTTTC
AACACATTCTTCAGTGAGACCGGCGCCGGAAAGCACGTGCCACGCGCCGT
GTTTTTGGACCTTGAACCAACTGTAATCGATGAAGTGAGGACTGGCGCCT
ACCGTCAGTTATTTCACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCT
GCTAACAACTTTGCCAGAGGTCACTACACAATTGGGAAAGAGATTGTGGA
TTTGTGCCTTGATAGGATCAGGAAGTTAGCTGATAACTGTACCGGTCTAC
AAGGGTTCCTCGTGTTCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTC
GGGTCTTTGCTCCTTGAGAGGCTGTCTGTTGATTACGGCAAGAAATCGAA
ACTGGGATTTACCGTTTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTG
AGCCTTACAACAGCGTTTTGTCCACTCACTCTCTGTTAGAACACACTGAC
GTTTCTGTGTTGCTTGACAATGAAAGCATCTACGAT
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