FC920243

Overview
NameFC920243
Unique NameFC920243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_ERYLH (Hydroxyacylglutathione hydrolase OS=Erythrobacter litoralis (strain HTCC2594) GN=gloB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.758e-24
Identity = 65/211 (30.81%), Postives = 101/211 (47.87%), Query Frame = 1
Query:   28 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            ++I   PCL DNY +L+ +  + E A +D  + ++ ++ AK                DHAGGN+ I E      +    ++ + G    V +GD   IG     + +    HT GHI+Y++     E    F GD++F  GCG+ FEG  +Q + SL   + +LP  T +YC HEYT  N  FA+  +P N  L   +     +R+   PT
Sbjct:    2 LEIHQFPCLSDNYGFLLHDPDSGETAAIDTPDGKEYLKQAKAKGWTITHIWNTHWHPDHAGGNKDIVEATGAKVIAPQEVEKLSGIDRVVGHGDTVDIGDFTADV-IDVSGHTNGHIAYHLP----EAGIAFVGDSVFALGCGRMFEGEPKQFWDSLS-RIKALPPETMLYCAHEYTAANARFAVHADPENDALVAYVEEITAKRERDEPT 206          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_BRAJA (Hydroxyacylglutathione hydrolase OS=Bradyrhizobium japonicum GN=gloB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.758e-24
Identity = 72/207 (34.78%), Postives = 100/207 (48.31%), Query Frame = 1
Query:   49 CLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVP-GIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLS--LHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            CL DN+ YLI +  TK  A +D  E   I++A ++               DH GG  ++K      +         +     +V N D   +G   N+L+  + TP HT  HISY    ++     VF  DTLF  GCG+ FEG+   M+ SL + L +LP   ++YCGHEYT  N+ FALTV+P N  LQ + A     R    PT
Sbjct:   10 CLNDNFGYLIHDVETKATASIDAPEAGPILKALEREGWQLTDILITHHHGDHVGGVAELKHKYNCRVVAPHDKTTAIANVDLRVANADVVKVG---NLLARVVETPGHTLDHISYVFDTEK----TVFAADTLFSIGCGRVFEGTYPMMWDSL-LKLRALPDDFKLYCGHEYTASNVKFALTVDPDNAALQARAAEVAKLRAENKPT 208          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_SACD2 (Hydroxyacylglutathione hydrolase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gloB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.013e-23
Identity = 73/222 (32.88%), Postives = 109/222 (49.10%), Query Frame = 1
Query:   28 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIK--------VYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLH---TPCHTKGHISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            + +  IP  + NY +++   +     VVDP    ++IE   Q              WDH  G   I E+   ++        VYG S+  ++  TH VE+GD+  +   V+V SL    TP H   H+SY +       P +F GDTLF  GCG+  +G+ EQ+  SL   + +LP  T+VYC HEYT+ N+ FA TVEP +  L       ++ R+  LP+
Sbjct:    9 VSVHPIPIYQGNYVWVMRHTSQNSVVVVDPGSASEVIEYITQHELTIASIIITHSHWDHVTG---IAELCANLQLWRDEEPVVYGPSV--IQDVTHPVEDGDRIELCKGVDVPSLQVIATPGHMPEHLSYLLPLTT---PKLFCGDTLFSCGCGRILQGTHEQLRTSLDA-ISALPSQTEVYCTHEYTLTNIKFARTVEPQSQALIDYEQRVRSLRKNDLPS 221          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_RHOS5 (Hydroxyacylglutathione hydrolase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=gloB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.013e-23
Identity = 70/213 (32.86%), Postives = 104/213 (48.83%), Query Frame = 1
Query:   28 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLD--NVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            +++  +PCL DNYA+L+ +  + E AVVD  E   ++ A  +               DH  G   ++E   G +V G + D   +      +  GD+  IG+    + L  P HT GHI+++      +    FTGD+L   GCG+ FEG+   M+QSL   L +LP  T +  GHEYT  N  FA T+EP N  L  ++      R+ G PT
Sbjct:    3 LELVTVPCLSDNYAFLVHDAASGETAVVDVPEAGPVMAALAERNWRLTQILLTHHHGDHVAGVAALREAT-GARVAGAAADAHRLPPLDLALAEGDRVRIGSEDGTV-LEVPGHTVGHIAFHFA----DSGLAFTGDSLMAMGCGRLFEGTPRMMWQSL-RKLSALPADTLICSGHEYTQANARFACTLEPENPVLIFRVGSIAAARKEGRPT 208          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_PROM9 (Hydroxyacylglutathione hydrolase OS=Prochlorococcus marinus (strain MIT 9312) GN=gloB PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.013e-23
Identity = 69/199 (34.67%), Postives = 102/199 (51.26%), Query Frame = 1
Query:   34 IFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDN--VKGCTHQVENGDKFSI-GAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKL 621
            I  +  L DN  +L   E  K   V+DP   E +I    +               DH GG + + E  P ++V   S D   +      VE+G+  +I G  + ++ +    HT  HI+++V G   E P +F GDTLF  GCG+ FEG+ +QMY SL   + SLP+ T +YC HEYT  NLL+AL ++P +  ++ KL
Sbjct:    9 IIGLRVLNDNVIWLW--EKDKSVVVIDPAIHEPVIRYIDENNLYIKAILQTHHHSDHIGGTKYLIERWPNVQVIASSKDKKRIPFQNISVEDGETLNILGEEIKIIEVLG--HTNSHIAFFVNG---ESPVLFIGDTLFSGGCGRIFEGTYQQMYSSL-ERIKSLPKNTLIYCAHEYTKANLLWALNLKPKDQDIKNKL 199          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_PASMU (Hydroxyacylglutathione hydrolase OS=Pasteurella multocida GN=gloB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.323e-23
Identity = 75/209 (35.89%), Postives = 99/209 (47.37%), Query Frame = 1
Query:   43 IPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQR---QAGLPT 660
            IP L DNY +L          V+D  E   +++  +Q               DH  G    K+  P +KV+G +    KG T  V  G   +   H++VL   T  HT+ H+SY V G       +F GD+LF AGCG+ F G+ + M+  L   L SLP  T V   HEYT+ NL FA  + P NV +QQ   W Q QR   Q  LPT
Sbjct:    5 IPALNDNYIWLY-GRANLPIIVIDIPEFTPLLDYVQQHQLNVEALLLTHHHDDHTAGVSLFKQHFPNVKVFGPAETQAKGATEIVNMGILQTEHYHIHVLQ--TAGHTEQHVSYLVDGH------LFCGDSLFSAGCGRVFTGNYQHMFDGL-QRLKSLPDDTIVCPAHEYTLANLAFAKYILPENVAIQQHEQWVQKQRVTHQPSLPT 203          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_BUCAI (Hydroxyacylglutathione hydrolase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gloB PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.323e-23
Identity = 66/194 (34.02%), Postives = 99/194 (51.03%), Query Frame = 1
Query:   43 IPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSN--VKLQQK 618
            I  L DNY ++++  T+    ++DP   E II+  ++               DH GG  KI E  P I V+G       G    V +GD+  +   +  +   TP HT GH+SYY        P +F GDTLF AGCG+ F+    +MY+S+ + + SLP  T + C HEYT+ NL F++ + P++  +KL  K
Sbjct:    6 ISILSDNYVWVLLN-TSGSCIIIDPGLSEPIIQEIERKKWRLRAILLTHNHIDHTGGTRKIIEYFPKISVFGPKETRQHGVNKIVSHGDRIILLDKIFYV-FFTPGHTSGHVSYY------SQPYIFCGDTLFSAGCGRVFKNKHLEMYRSIKI-ISSLPDSTLLCCSHEYTLSNLQFSMFILPNDNFIKLYLK 190          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_YEAST (Hydroxyacylglutathione hydrolase, cytoplasmic isozyme OS=Saccharomyces cerevisiae GN=GLO2 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.257e-23
Identity = 68/190 (35.79%), Postives = 97/190 (51.05%), Query Frame = 1
Query:   61 NYAYLIIEETTKEAAVVDPVEPEKII-EAAKQXXXXXXXXXXXXXXWDHAGGNEKI------KEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQM----YQSLCVTLGSLP-QPTQVYCGHEYTVKNLLFALTVEP 594
            NY YL+ +   K++ ++DP EP +++ E  +               +DHA GN  I      K     ++V GGS D  K  T   EN  K  +G  + +  + TPCHT+  I YYV     ++  +FTGDTLF AGCG+FFEG+ E+M      S+  T+G      T+VY GHEYT  N+ F   + P
Sbjct:   16 NYCYLLSDSKNKKSWLIDPAEPPEVLPELTEDEKISVEAIVNTHHHYDHADGNADILKYLKEKNPTSKVEVIGGSKDCPK-VTIIPENLKKLHLG-DLEITCIRTPCHTRDSICYYVKDPTTDERCIFTGDTLFTAGCGRFFEGTGEEMDIALNNSILETVGRQNWSKTRVYPGHEYTSDNVKFVRKIYP 203          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_PROM0 (Hydroxyacylglutathione hydrolase OS=Prochlorococcus marinus (strain MIT 9301) GN=gloB PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.257e-23
Identity = 67/200 (33.50%), Postives = 105/200 (52.50%), Query Frame = 1
Query:   34 IFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDN--VKGCTHQVENGDKFSI-GAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLA 624
            I  +  L DN  +L +++  K   V+DP   E +I    +               DH GG + + E    +KV   S +   +      VE+G+  +I G  V ++ +    HT  HI++++ G   E+P +F GDTLF  GCG+ FEG+ +QMY SL   + SLP+ T +YC HEYT  N+L+AL ++P +  L+ KL+
Sbjct:    9 IIGLRVLNDNVIWLWVKD--KSVVVIDPSVHEPVIRYIDENNLHLKAILQTHHHSDHIGGTKPLIERWQNVKVIASSKEKKRIPFQNVSVEDGETLNILGEEVKIIEVLG--HTSSHIAFFLNG---ENPVLFIGDTLFSGGCGRIFEGTYQQMYSSL-ERIKSLPKDTLIYCAHEYTKSNILWALNLKPKDQDLKNKLS 200          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_NEIG2 (Hydroxyacylglutathione hydrolase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=gloB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.257e-23
Identity = 73/202 (36.14%), Postives = 96/202 (47.52%), Query Frame = 1
Query:   28 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQ 633
            MKI  +  L DNY ++I  +    A  VDP EP  ++E   +               DH GG   +        VYG S  +++  TH V  G +F+ G +  V    TP HT  H SY +   +G    VF GDTLF AGCG+ F G+ EQ+Y S       LP+ T  Y  HEYT  NL FA  +EP N  +Q  L  A+
Sbjct:    1 MKITPVKALTDNYIWMI--QHGNHAVCVDPSEPSPVLEFLVRNRLMLAQTWVTHPHPDHEGGAAALWRGYMESPVYGES--DIEAATHTVTAGTRFTFG-NGQVTVWATPGHTDRHTSYLLETSDGIH--VFCGDTLFSAGCGRVFTGTVEQLYDSF-QRFNQLPEGTLFYPAHEYTAANLRFAAHIEPDNADIQTALKAAE 194          
The following BLAST results are available for this feature:
BLAST of FC920243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
GLO2_ERYLH7.758e-2430.81Hydroxyacylglutathione hydrolase OS=Erythrobacter ... [more]
GLO2_BRAJA7.758e-2434.78Hydroxyacylglutathione hydrolase OS=Bradyrhizobium... [more]
GLO2_SACD21.013e-2332.88Hydroxyacylglutathione hydrolase OS=Saccharophagus... [more]
GLO2_RHOS51.013e-2332.86Hydroxyacylglutathione hydrolase OS=Rhodobacter sp... [more]
GLO2_PROM91.013e-2334.67Hydroxyacylglutathione hydrolase OS=Prochlorococcu... [more]
GLO2_PASMU1.323e-2335.89Hydroxyacylglutathione hydrolase OS=Pasteurella mu... [more]
GLO2_BUCAI1.323e-2334.02Hydroxyacylglutathione hydrolase OS=Buchnera aphid... [more]
GLO2_YEAST2.257e-2335.79Hydroxyacylglutathione hydrolase, cytoplasmic isoz... [more]
GLO2_PROM02.257e-2333.50Hydroxyacylglutathione hydrolase OS=Prochlorococcu... [more]
GLO2_NEIG22.257e-2336.14Hydroxyacylglutathione hydrolase OS=Neisseria gono... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32005G09EF RVDevelop1 Citrus clementina cDNA clone C32005G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920243 ID=FC920243; Name=FC920243; organism=Citrus clementina; type=EST; length=662bp
CTTCGTGCACTTGAGCAGAGAATAAAAATGAAAATCTTTCATATTCCTTG
TTTGGAAGACAACTATGCCTACCTGATCATTGAAGAGACCACTAAAGAAG
CTGCAGTTGTTGATCCAGTGGAGCCAGAGAAGATCATTGAGGCTGCCAAA
CAACACGGTGTCAATCTCACCACCGTTCTCACTACTCATCATCACTGGGA
CCATGCTGGAGGGAACGAAAAGATAAAGGAGATGGTGCCTGGGATTAAGG
TGTATGGTGGCTCACTTGATAATGTAAAGGGGTGCACTCATCAAGTGGAA
AATGGTGATAAGTTCTCAATTGGGGCTCATGTCAATGTACTGTCTCTTCA
CACGCCTTGCCATACCAAAGGTCACATAAGTTATTATGTGACTGGCAAAG
AGGGAGAAGACCCAGCTGTTTTCACTGGAGACACACTGTTTGTCGCTGGT
TGTGGAAAATTTTTTGAAGGCTCGGCAGAACAGATGTATCAATCCCTGTG
CGTAACATTGGGCTCATTACCTCAGCCAACTCAAGTTTACTGTGGCCATG
AGTATACAGTGAAGAACCTACTATTTGCTCTTACTGTCGAACCAAGCAAT
GTGAAGCTACAGCAAAAATTGGCGTGGGCTCAGAACCAGCGGCAAGCCGG
CCTGCCAACCAT
back to top