FC920243

Overview
NameFC920243
Unique NameFC920243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14527 contig Ccv1_Contig14527:5..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_ANADE (Hydroxyacylglutathione hydrolase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=gloB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 57/202 (28.22%), Postives = 86/202 (42.57%), Query Frame = 1
Query:   55 EDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLH-TPCHTKGHISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGS-AEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGL 654
            +DNY YL+      +AA+VDP +P+  +  A                 DH GG   +   + G +V G   D  +     V+   +  +      L +H  P HT G +     G+      + TGDTLF AGCG    G    ++ +S    +  L    +V+ GH+Y   NL FAL +EP     + +LA  +    AGL
Sbjct:   10 KDNYTYLLA--AGGDAALVDPGDPDAALALAAAHGVRPRWILHTHGHADHTGGTAAVARAL-GAQVLGHGGDAAR-YRPDVDLAGRAEVALGALALRVHPVPGHTPGSVLLEWEGR------LLTGDTLFWAGCGNCRHGGDPARLAESFLGPIARLDGGLEVHPGHDYAAPNLAFALALEPDGAAARARLAEVEAAHAAGL 201          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_LEPBL (Hydroxyacylglutathione hydrolase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=gloB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.812e-12
Identity = 51/184 (27.72%), Postives = 81/184 (44.02%), Query Frame = 1
Query:   61 NYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGG--SLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDP-AVFTGDTLFVAGCGKFFEGS-AEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSN 600
            N+ Y++    T E   +DP + E+I +                   DH  GN  + +   G  VY     +  +   TH ++ GD     +   +  L TP HT  H+   +   E + P A+FTGDT+F AG G    G   E + +++      L +   +Y GH+Y   NL F L+++PSN
Sbjct:   14 NFTYILRNSETSETLSIDPYDSEQIEKFLDSKGWTLDFLLNTHEHEDHTSGNTGLVQRY-GCTVYSHPEGIGKIPHATHPLKKGDFLLRSSKEYLEILDTPGHTFCHVCLLLV--ENQKPKAIFTGDTIFNAGVGNCHHGGDPEVLAKTILEQFYPLEEEILLYPGHDYLETNLKFTLSLDPSN 194          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_LEPBJ (Hydroxyacylglutathione hydrolase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=gloB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.812e-12
Identity = 51/184 (27.72%), Postives = 81/184 (44.02%), Query Frame = 1
Query:   61 NYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGG--SLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDP-AVFTGDTLFVAGCGKFFEGS-AEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSN 600
            N+ Y++    T E   +DP + E+I +                   DH  GN  + +   G  VY     +  +   TH ++ GD     +   +  L TP HT  H+   +   E + P A+FTGDT+F AG G    G   E + +++      L +   +Y GH+Y   NL F L+++PSN
Sbjct:   14 NFTYILRNSETSETLSIDPYDSEQIEKFLDSKGWTLDFLLNTHEHEDHTSGNTGLVQRY-GCTVYSHPEGIGKIPHATHPLKKGDFLLRSSKEYLEILDTPGHTFCHVCLLLV--ENQKPKAIFTGDTIFNAGVGNCHHGGDPEVLAKTILEQFYPLEEEILLYPGHDYLETNLKFTLSLDPSN 194          
The following BLAST results are available for this feature:
BLAST of FC920243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
GLO2_ANADE3.993e-1228.22Hydroxyacylglutathione hydrolase OS=Anaeromyxobact... [more]
GLO2_LEPBL6.812e-1227.72Hydroxyacylglutathione hydrolase OS=Leptospira bor... [more]
GLO2_LEPBJ6.812e-1227.72Hydroxyacylglutathione hydrolase OS=Leptospira bor... [more]

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Properties
Property NameValue
Genbank descriptionC32005G09EF RVDevelop1 Citrus clementina cDNA clone C32005G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920243 ID=FC920243; Name=FC920243; organism=Citrus clementina; type=EST; length=662bp
CTTCGTGCACTTGAGCAGAGAATAAAAATGAAAATCTTTCATATTCCTTG
TTTGGAAGACAACTATGCCTACCTGATCATTGAAGAGACCACTAAAGAAG
CTGCAGTTGTTGATCCAGTGGAGCCAGAGAAGATCATTGAGGCTGCCAAA
CAACACGGTGTCAATCTCACCACCGTTCTCACTACTCATCATCACTGGGA
CCATGCTGGAGGGAACGAAAAGATAAAGGAGATGGTGCCTGGGATTAAGG
TGTATGGTGGCTCACTTGATAATGTAAAGGGGTGCACTCATCAAGTGGAA
AATGGTGATAAGTTCTCAATTGGGGCTCATGTCAATGTACTGTCTCTTCA
CACGCCTTGCCATACCAAAGGTCACATAAGTTATTATGTGACTGGCAAAG
AGGGAGAAGACCCAGCTGTTTTCACTGGAGACACACTGTTTGTCGCTGGT
TGTGGAAAATTTTTTGAAGGCTCGGCAGAACAGATGTATCAATCCCTGTG
CGTAACATTGGGCTCATTACCTCAGCCAACTCAAGTTTACTGTGGCCATG
AGTATACAGTGAAGAACCTACTATTTGCTCTTACTGTCGAACCAAGCAAT
GTGAAGCTACAGCAAAAATTGGCGTGGGCTCAGAACCAGCGGCAAGCCGG
CCTGCCAACCAT
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