FC920243

Overview
NameFC920243
Unique NameFC920243
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14527 contig Ccv1_Contig14527:5..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: PNKD_MOUSE (Probable hydrolase PNKD OS=Mus musculus GN=Pnkd PE=2 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.080e-33
Identity = 77/206 (37.38%), Postives = 115/206 (55.83%), Query Frame = 1
Query:   28 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPA-VFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQR 642
            +K+  IP L DNY+YLII+     A  VDP +P  +  + ++              WDH+GGN  +       +VYG   D +   TH + + D  S+G  + + +L TP HT+GH+ Y + G+  + P+ +F+GD LF++GCG+ FEG+AE M  SL   L  L   T ++ GHEY  +NL FA  VEP N+  ++K+ W Q QR
Sbjct:  119 VKVLPIPVLSDNYSYLIIDTQAGLAVAVDPSDPRAVQASIEKERVNLVAILCTHKHWDHSGGNRDLSRRHRDCRVYGSPQDGIPYLTHPLCHQDVVSVG-RLQIRALATPGHTQGHLVYLLDGEPYKGPSCLFSGDLLFLSGCGRTFEGTAETMLSSLDTVL-DLGDDTLLWPGHEYAEENLGFAGVVEPENLARERKMQWVQRQR 322          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_RHORT (Hydroxyacylglutathione hydrolase OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=gloB PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.842e-33
Identity = 86/213 (40.38%), Postives = 112/213 (52.58%), Query Frame = 1
Query:   28 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYG--GSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            + I  I  L DNY YL+    T   AV+DP   E ++ AA+               +DH GGNE+IK    G ++ G  G    + G    V  GD+ +IG       + TP HT GHI+Y+      E  A+F GDTLF AGCG+ FEGSA QM+ SL   L +LP  T V+CGHEYT  N+ FALT++P N  L+ +       R AG PT
Sbjct:    4 LDIHQIAVLSDNYIYLVRCRATGACAVIDPSLAEPVLAAAESLGWTITHILNTHHHYDHTGGNEEIKAAT-GCEIIGFAGDAHRLPGIDRTVVEGDRVAIG-QAEARVIETPGHTLGHIAYWFA----ESSALFCGDTLFSAGCGRLFEGSAGQMWDSLR-KLRALPAQTLVFCGHEYTQPNITFALTIDPRNEALRARALEVDALRAAGRPT 209          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_ALHEH (Hydroxyacylglutathione hydrolase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=gloB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.406e-33
Identity = 84/211 (39.81%), Postives = 114/211 (54.03%), Query Frame = 1
Query:   31 KIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDNVKGCTHQVENGDKFSI-GAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            +I  IP   DNY +L ++   + AAVVDP + E +  A +                DH GG E++    P + VYG + ++V G +  +   D F + G  + +  L  P HT GHI+    G      A+F+GD LF  GCG+ FEG+ EQMY SL   L +LP+ T+VYCGHEYT+ NL FA  VEP N  L Q+L  A+  RQ G PT
Sbjct:    3 EIVAIPAFADNYIWLAVDRNRRLAAVVDPGDAEPVEAALRASGLRLSAILITHHHHDHTGGVEELLAAHP-VPVYGPADESVPGVSQPLREPDAFEVPGLGLPLRVLDVPGHTAGHIALVADG------ALFSGDALFAGGCGRLFEGTPEQMYASLG-KLAALPEATRVYCGHEYTLANLRFAHQVEPDNPNLTQRLRQAEAARQRGEPT 205          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_SYNP2 (Hydroxyacylglutathione hydrolase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=gloB PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.142e-33
Identity = 77/216 (35.65%), Postives = 115/216 (53.24%), Query Frame = 1
Query:   28 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLD----NVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPA-VFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            M+I  +P   DNY +L+++  T + AVVDP + + ++E   +               DH GGN ++    P   VYG  +D     + G T  ++ G+   +  +  V  L  P HT+GHI+YY    + ED   +F GDTLF  GCG+  EG+  Q++ SL   +  LP  T ++C HEYT+KN+ F+LTV+P N  LQ++    Q QRQ   PT
Sbjct:    1 MEIIRLPAFNDNYIFLLVDRATGDCAVVDPGDAKVVLEYLSKEDLTLKTILITHHHADHVGGNRQLLSHFPAAAVYGSEIDLQKRRIPGQTVSLKAGNHLDL-FNRTVEILFVPGHTQGHIAYYFPPLQPEDSGDLFCGDTLFANGCGRLLEGTPAQLFASL-QQICDLPDNTNIWCAHEYTLKNIKFSLTVDPENEALQRRFQQVQTQRQRQKPT 214          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_GLOVI (Hydroxyacylglutathione hydrolase OS=Gloeobacter violaceus GN=gloB PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.142e-33
Identity = 81/213 (38.03%), Postives = 113/213 (53.05%), Query Frame = 1
Query:   28 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDN--VKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            M +  +  L+DNY +++ +E  + AAVVDP E   ++EA  +               DH GGN ++ E  PGI VY    D   + G T ++E+GD  + G       +  P HT GHI+Y+  G       +F GDTLF  GCG+ FEG+A QM  SL   L  LP  TQV+C HEYT+ NL FA T+EP N +L ++L   +  R   + T
Sbjct:    1 MLVHRLNALKDNYVFVLEDEAARTAAVVDPAEARPVLEALVRLGLKLVAIFNTHHHHDHVGGNRELLEAYPGIAVYASRRDRGRIPGQTVELEDGDTVAFGCE-RARVIFVPGHTHGHIAYHFAGCGH----LFCGDTLFAGGCGRLFEGTARQMQHSLG-RLRELPGETQVWCAHEYTLGNLRFAHTLEPDNAELAERLRTVEVLRARKIAT 207          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_THEEB (Hydroxyacylglutathione hydrolase OS=Thermosynechococcus elongatus (strain BP-1) GN=gloB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.360e-33
Identity = 88/216 (40.74%), Postives = 114/216 (52.78%), Query Frame = 1
Query:   28 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDN--VKGCTHQVENGDKFSIG-AHVNVLSLHTPCHTKGHISYYV--TGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            M I+ +  L DNY +L+ +  T  AAVVDP EPE ++    +              WDH G N  ++   P I VYG S D   +   T  ++ GD+   G  + +VL +  P HT+GHI+YY   TG       +F GDTLF  GCG+ FEGS  QM  SL   L  LP+ T+V+C HEYT KNL FALTVE  N  LQ++ A     R  G  T
Sbjct:    1 MMIYRLNALTDNYIFLLHDPQTGTAAVVDPAEPEPVLAKLAELGATLRAIFNTHHHWDHVGANCALRSRFPDIAVYGSSEDQGRIPEQTVFLKAGDRVPFGQTYFDVLFV--PGHTRGHIAYYAPTTGD------LFCGDTLFGGGCGRLFEGSPAQMLDSLN-QLRQLPEETRVWCAHEYTQKNLSFALTVEADNPTLQERYAQVCRDRAQGKAT 207          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_SYNJA (Hydroxyacylglutathione hydrolase OS=Synechococcus sp. (strain JA-3-3Ab) GN=gloB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.360e-33
Identity = 82/213 (38.50%), Postives = 110/213 (51.64%), Query Frame = 1
Query:   28 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDN--VKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            M+I  +P L DNY YL+ +  T  AAVVDP   E +++   +               DH GGN ++    P   VYG   D   + G T +++ G+  +         L  P HT+GH++YY      E   +F GDTLF  GCG+ FEG+ EQM  SL   L  LP+ T+V+C HEYT+ NL FALTV+  N  LQ +       RQAG PT
Sbjct:    1 MRILQLPALRDNYIYLLHDPETATAAVVDPTVAEPVLDKLAELGAELVAIFNTHHHHDHVGGNLQLLARYPRAVVYGSQADRGRIPGQTVELQAGETVAFAGR-QAKVLFVPGHTRGHVAYYFP----ESGDLFCGDTLFAGGCGRLFEGTPEQMLGSLD-QLRQLPEATRVWCAHEYTLNNLKFALTVDGDNPDLQARYQQVVALRQAGSPT 207          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_HYPNA (Hydroxyacylglutathione hydrolase OS=Hyphomonas neptunium (strain ATCC 15444) GN=gloB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.360e-33
Identity = 77/215 (35.81%), Postives = 113/215 (52.56%), Query Frame = 1
Query:   22 IKMKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYG--GSLDNVKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            + ++I   PCL DNY YL+ E  +     +D  +    +  A++               DHAGGN KIKE   G K+ G  G  D + G   +V+ GD   +G     + +  P HT GHI+++   +E    A F GD +F  GCG+ FEG+ E M++SL   +  LP+ TQ+YC HEYT  N  FA+T+EP N  L++ +AW + +R    PT
Sbjct:    3 VLIEIHQFPCLNDNYGYLVHEPGSGRTIAIDTPDAAVYLAEAEKMSWTISEIWNTHWHPDHAGGNLKIKEAT-GCKIIGPAGEADKIPGIDRRVKGGDTVELGGATATV-IDVPGHTLGHIAFHFPDQE----AAFVGDAVFALGCGRVFEGTMEMMWESL-KRIKKLPKKTQLYCAHEYTASNAKFAVTIEPENKALKEYVAWIEKRRAEDKPT 210          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2M_ARATH (Hydroxyacylglutathione hydrolase 1, mitochondrial OS=Arabidopsis thaliana GN=GLX2-1 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.360e-33
Identity = 85/213 (39.91%), Postives = 112/213 (52.58%), Query Frame = 1
Query:   28 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDN--VKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            +KI  +PC +DNYAYL+ +E T    VVDP E   +IEA  +               DH GGN ++KE   G KV G ++D   + G    +++ DK+    H  V  L TP HT+GHIS+Y  G       +FTGD ++   CG   EG+ EQM  SL   + SLP  T +YCG E T  NL FAL+VEP N  LQ       + R  GLP+
Sbjct:   78 LKIELVPCSKDNYAYLLHDEDTGTVGVVDPSEAAPVIEALSRKNWNLTYILNTHHHDDHIGGNAELKERY-GAKVIGSAVDKDRIPGIDILLKDSDKWMFAGH-EVRILDTPGHTQGHISFYFPGSA----TIFTGDLIYSLSCGTLSEGTPEQMLSSL-QKIVSLPDDTNIYCGRENTAGNLKFALSVEPKNETLQSYATRVAHLRSQGLPS 283          
BLAST of FC920243 vs. ExPASy Swiss-Prot
Match: GLO2_MICAN (Hydroxyacylglutathione hydrolase OS=Microcystis aeruginosa (strain NIES-843) GN=gloB PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.194e-32
Identity = 82/214 (38.32%), Postives = 109/214 (50.93%), Query Frame = 1
Query:   28 MKIFHIPCLEDNYAYLIIEETTKEAAVVDPVEPEKIIEAAKQXXXXXXXXXXXXXXWDHAGGNEKIKEMVPGIKVYGGSLDN--VKGCTHQVENGDKFSIGAHVNVLSLHTPCHTKGHISYYVTG-KEGEDPAVFTGDTLFVAGCGKFFEGSAEQMYQSLCVTLGSLPQPTQVYCGHEYTVKNLLFALTVEPSNVKLQQKLAWAQNQRQAGLPT 660
            M+I  +  L DNY +L+ +   K AAVVDP EPE +    +                DH G N+ +    P + VYGG  D   + G    +E GD+         +    P HT+ HI+YY      G+   +F GDTLF  GCG+ FEG+  QM  SL   L SLP  T+V+C HEYT+ NL FALTV+P+N  LQQ+    +  R   LPT
Sbjct:    1 MEIERLNALSDNYIFLLYDPAQKIAAVVDPAEPEPVFRRLEALQVDLVAIFNTHHHGDHVGANQALINRYPHLCVYGGKEDRGRIPGQQLFLEEGDRVEFAGRWAEV-FFVPGHTRAHIAYYFPPVNPGDYGELFCGDTLFSGGCGRLFEGTPGQMVASL-TKLRSLPDQTRVWCAHEYTLNNLKFALTVDPNNAALQQRYREVEKHRAEDLPT 212          
The following BLAST results are available for this feature:
BLAST of FC920243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
PNKD_MOUSE1.080e-3337.38Probable hydrolase PNKD OS=Mus musculus GN=Pnkd PE... [more]
GLO2_RHORT1.842e-3340.38Hydroxyacylglutathione hydrolase OS=Rhodospirillum... [more]
GLO2_ALHEH2.406e-3339.81Hydroxyacylglutathione hydrolase OS=Alkalilimnicol... [more]
GLO2_SYNP23.142e-3335.65Hydroxyacylglutathione hydrolase OS=Synechococcus ... [more]
GLO2_GLOVI3.142e-3338.03Hydroxyacylglutathione hydrolase OS=Gloeobacter vi... [more]
GLO2_THEEB5.360e-3340.74Hydroxyacylglutathione hydrolase OS=Thermosynechoc... [more]
GLO2_SYNJA5.360e-3338.50Hydroxyacylglutathione hydrolase OS=Synechococcus ... [more]
GLO2_HYPNA5.360e-3335.81Hydroxyacylglutathione hydrolase OS=Hyphomonas nep... [more]
GLO2M_ARATH5.360e-3339.91Hydroxyacylglutathione hydrolase 1, mitochondrial ... [more]
GLO2_MICAN1.194e-3238.32Hydroxyacylglutathione hydrolase OS=Microcystis ae... [more]

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Properties
Property NameValue
Genbank descriptionC32005G09EF RVDevelop1 Citrus clementina cDNA clone C32005G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920243 ID=FC920243; Name=FC920243; organism=Citrus clementina; type=EST; length=662bp
CTTCGTGCACTTGAGCAGAGAATAAAAATGAAAATCTTTCATATTCCTTG
TTTGGAAGACAACTATGCCTACCTGATCATTGAAGAGACCACTAAAGAAG
CTGCAGTTGTTGATCCAGTGGAGCCAGAGAAGATCATTGAGGCTGCCAAA
CAACACGGTGTCAATCTCACCACCGTTCTCACTACTCATCATCACTGGGA
CCATGCTGGAGGGAACGAAAAGATAAAGGAGATGGTGCCTGGGATTAAGG
TGTATGGTGGCTCACTTGATAATGTAAAGGGGTGCACTCATCAAGTGGAA
AATGGTGATAAGTTCTCAATTGGGGCTCATGTCAATGTACTGTCTCTTCA
CACGCCTTGCCATACCAAAGGTCACATAAGTTATTATGTGACTGGCAAAG
AGGGAGAAGACCCAGCTGTTTTCACTGGAGACACACTGTTTGTCGCTGGT
TGTGGAAAATTTTTTGAAGGCTCGGCAGAACAGATGTATCAATCCCTGTG
CGTAACATTGGGCTCATTACCTCAGCCAACTCAAGTTTACTGTGGCCATG
AGTATACAGTGAAGAACCTACTATTTGCTCTTACTGTCGAACCAAGCAAT
GTGAAGCTACAGCAAAAATTGGCGTGGGCTCAGAACCAGCGGCAAGCCGG
CCTGCCAACCAT
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