FC920256

Overview
NameFC920256
Unique NameFC920256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:11..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_PROM9 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9312) GN=hemL PE=3 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.316e-60
Identity = 109/143 (76.22%), Postives = 122/143 (85.31%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SEE F+ A+ELMPGGV+SPVRAFKSVGGQPIVFD VKG   WDIDGN YIDY+GSWGPAI GHA  +V  AL E ++KGTSFGAPC+LEN LAEMVI AVPS+EMVRFVNSGTEACM VLRL RAFTGR+++I  +G YHGHA
Sbjct:   10 SEEIFSAAQELMPGGVSSPVRAFKSVGGQPIVFDRVKGPFAWDIDGNRYIDYIGSWGPAICGHAHPEVTTALQEAIEKGTSFGAPCVLENKLAEMVIDAVPSVEMVRFVNSGTEACMAVLRLMRAFTGRDKVIKFDGCYHGHA 152          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_SYNY3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechocystis sp. (strain PCC 6803) GN=hemL PE=3 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.086e-59
Identity = 110/148 (74.32%), Postives = 123/148 (83.11%), Query Frame = 1
Query:  196 FTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            F    SEE F  A+ LMPGGV+SPVRAFKSVGGQPIVFD V+G+ +WD+DGN+YIDYVG+WGPAI GHA   V++AL + + KGTSFGAPC  ENVLAEMVI AVPSIEMVRFVNSGTEACM VLRL RAFTGRE+II  EG YHGHA
Sbjct:    7 FITTKSEEIFAAAQHLMPGGVSSPVRAFKSVGGQPIVFDRVEGAQIWDVDGNQYIDYVGTWGPAICGHAHPDVISALKQALDKGTSFGAPCAQENVLAEMVIDAVPSIEMVRFVNSGTEACMSVLRLMRAFTGREKIIKFEGCYHGHA 154          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_PROMS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain AS9601) GN=hemL PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.419e-59
Identity = 110/149 (73.83%), Postives = 125/149 (83.89%), Query Frame = 1
Query:  193 NFTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            N+T   SEE F+ A++LMPGGV+SPVRAFKSVGGQPIVFD VKG   WDIDGN YIDY+GSWGPAI GHA  +V  AL E ++KGTSFGAPC+LEN LAEMVI AVPS+EMVRFVNSGTEACM VLRL RAFTGR+++I  +G YHGHA
Sbjct:    6 NYT--KSEEIFSAAQQLMPGGVSSPVRAFKSVGGQPIVFDRVKGPFAWDIDGNRYIDYIGSWGPAICGHAHPEVTTALQEAIEKGTSFGAPCVLENKLAEMVIDAVPSVEMVRFVNSGTEACMAVLRLMRAFTGRDKVIKFDGCYHGHA 152          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_PROM2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9215) GN=hemL PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.853e-59
Identity = 108/143 (75.52%), Postives = 122/143 (85.31%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SEE F+ A++LMPGGV+SPVRAFKSVGGQPIVFD VKG   WDIDGN YIDY+GSWGPAI GHA  +V  AL E ++KGTSFGAPC+LEN LAEMVI AVPS+EMVRFVNSGTEACM VLRL RAFTGR+++I  +G YHGHA
Sbjct:   10 SEEIFSAAQQLMPGGVSSPVRAFKSVGGQPIVFDRVKGPFAWDIDGNRYIDYIGSWGPAICGHAHPEVTTALQEAIEKGTSFGAPCVLENKLAEMVIDAVPSVEMVRFVNSGTEACMAVLRLMRAFTGRDKVIKFDGCYHGHA 152          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_ANAVT (Glutamate-1-semialdehyde 2,1-aminomutase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=hemL PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.853e-59
Identity = 111/151 (73.51%), Postives = 127/151 (84.11%), Query Frame = 1
Query:  193 NFTLKN--SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            N T+K   S+E F  A+ LMPGGV+SPVRAFKSVGGQPIVFD VKG+++WD+DGN+YIDYVG+WGPAI GHA   V+ AL E ++KGTSFGAP  LENVLAEMVI+AVPSIEMVRFVNSGTEACM VLRL RAFT RE++I  EG YHGHA
Sbjct:    3 NTTIKTTKSQEIFAAAQNLMPGGVSSPVRAFKSVGGQPIVFDHVKGAYIWDVDGNQYIDYVGTWGPAICGHAHPDVIGALHEALEKGTSFGAPSFLENVLAEMVIAAVPSIEMVRFVNSGTEACMAVLRLMRAFTNREKVIKFEGCYHGHA 153          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_SYNPW (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain WH7803) GN=hemL PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 2.420e-59
Identity = 105/143 (73.43%), Postives = 124/143 (86.71%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            S+E F+ A+ LMPGGV+SPVRAF+SVGGQP+VFD VKG + WD+DGN+YIDY+GSWGPAI GHA  +V++AL E ++KGTSFGAPC LEN LAEMVI AVPS+EMVRFVNSGTEACM VLRL RAFTGR+++I  EG YHGHA
Sbjct:   11 SQELFSAAQALMPGGVSSPVRAFRSVGGQPLVFDRVKGPYAWDVDGNKYIDYIGSWGPAICGHAHPEVISALQEAIEKGTSFGAPCALENTLAEMVIDAVPSVEMVRFVNSGTEACMAVLRLMRAFTGRDKVIKFEGCYHGHA 153          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_PROM5 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9515) GN=hemL PE=3 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 2.420e-59
Identity = 107/148 (72.30%), Postives = 124/148 (83.78%), Query Frame = 1
Query:  196 FTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            F + +SEE F+ A +LMPGGV+SPVRAFKSVGGQPIVFD VKG   WD+DGN YIDY+GSWGPAI GHA  +V+ AL E ++KGTSFGAPC+ EN LAEMVI AVPS+EMVRFVNSGTEACM VLRL RAFTGR+++I  +G YHGHA
Sbjct:    5 FNITHSEEVFSSALKLMPGGVSSPVRAFKSVGGQPIVFDRVKGPFAWDVDGNRYIDYIGSWGPAICGHAHPEVITALQEAIEKGTSFGAPCVQENKLAEMVIDAVPSVEMVRFVNSGTEACMAVLRLMRAFTGRDKVIKFDGCYHGHA 152          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_SYNSC (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain CC9605) GN=hemL PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.160e-59
Identity = 106/144 (73.61%), Postives = 123/144 (85.42%), Query Frame = 1
Query:  208 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            +S+  F  A+ LMPGGV+SPVRAFKSVGGQPIVFD VKG + WD+DGN+YIDY+GSWGPAI GHA  +V+AAL E ++KGTSFGAPC LEN LAEMVI AVPS+EMVRFVNSGTEACM VLRL RA+TGR+++I  EG YHGHA
Sbjct:    5 HSQAIFGAAQALMPGGVSSPVRAFKSVGGQPIVFDRVKGPYAWDVDGNKYIDYIGSWGPAICGHAHPEVIAALQEAIEKGTSFGAPCALENTLAEMVIDAVPSVEMVRFVNSGTEACMAVLRLIRAYTGRDKVIKFEGCYHGHA 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_MICAN (Glutamate-1-semialdehyde 2,1-aminomutase OS=Microcystis aeruginosa (strain NIES-843) GN=hemL PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.160e-59
Identity = 108/149 (72.48%), Postives = 128/149 (85.91%), Query Frame = 1
Query:  193 NFTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            ++    S+E F  A++LMPGGV+SPVRAFKSVGGQPIVF+SVKG+++ D+DGNEYIDYVG+WGPAI GHA  +V+AAL + + KGTSFGAPC+ EN+LAEMVI AVPSIEMVRFVNSGTEACM VLRL RAFTGR++II  EG YHGHA
Sbjct:    6 SYQTTKSKEIFTAAQKLMPGGVSSPVRAFKSVGGQPIVFESVKGAYIRDVDGNEYIDYVGTWGPAICGHAHPEVIAALHDALDKGTSFGAPCVQENILAEMVIDAVPSIEMVRFVNSGTEACMSVLRLMRAFTGRDKIIKFEGCYHGHA 154          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_TRIEI (Glutamate-1-semialdehyde 2,1-aminomutase OS=Trichodesmium erythraeum (strain IMS101) GN=hemL PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.127e-59
Identity = 106/143 (74.13%), Postives = 124/143 (86.71%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SEE F  A++LMPGGV+SPVRAFKSVGGQPIVFD V+G+++WD+DGN+YIDYVG+WGPAI GHA  +VL  L E ++KGTSFGAPC LEN LA+MVI AVPSIEM+RFVNSGTEACM VLRL RAFTGR+++I  EG YHGHA
Sbjct:   11 SEEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVQGAYIWDVDGNQYIDYVGTWGPAICGHAHPEVLNGLKEVLEKGTSFGAPCALENTLAKMVIDAVPSIEMIRFVNSGTEACMAVLRLMRAFTGRDKVIKFEGCYHGHA 153          
The following BLAST results are available for this feature:
BLAST of FC920256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_PROM98.316e-6076.22Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_SYNY31.086e-5974.32Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_PROMS1.419e-5973.83Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_PROM21.853e-5975.52Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_ANAVT1.853e-5973.51Glutamate-1-semialdehyde 2,1-aminomutase OS=Anabae... [more]
GSA_SYNPW2.420e-5973.43Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_PROM52.420e-5972.30Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_SYNSC3.160e-5973.61Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_MICAN3.160e-5972.48Glutamate-1-semialdehyde 2,1-aminomutase OS=Microc... [more]
GSA_TRIEI4.127e-5974.13Glutamate-1-semialdehyde 2,1-aminomutase OS=Tricho... [more]

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Properties
Property NameValue
Genbank descriptionC32006A02EF RVDevelop1 Citrus clementina cDNA clone C32006A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920256 ID=FC920256; Name=FC920256; organism=Citrus clementina; type=EST; length=639bp
ATCTTGATTGACCTTTGATGAGAAAAAGAGACATCTATAAAAAGTGACAC
AAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGCTTTCAT
GTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGGATCCTCTCGC
TGTAGTGTTAAAATGTCAGTCTCTGTTGAGGAGCAGAAGAAAAATTTCAC
TTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTG
GAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCT
ATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAA
CGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCACG
CAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACC
AGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAAT
CTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAACTCAGGCACAG
AAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCACTGGGAGAGAG
AGGATCATCACAATTGAGGGTTGGTATCATGGCCATGCT
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