FC920256

Overview
NameFC920256
Unique NameFC920256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_DESDA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulfovibrio desulfuricans (strain ATCC 27774 / DSM 6949) GN=hemL PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.245e-38
Identity = 75/143 (52.45%), Postives = 100/143 (69.93%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            S + F  A+ ++PGGVNSPVRA  +V  QP+      G H+ D+DG +YID+V SWGP I+GH +  V  A+ +   +GTS+GAPC  E +LAE V++A+PS+EMVR VNSGTEA M  LRLARA T R++++   G YHGHA
Sbjct:    5 SRQLFEKAQAVIPGGVNSPVRACHNVDSQPLFIAEAHGCHLTDVDGRQYIDFVLSWGPMILGHDEPSVTRAVCDAAHRGTSYGAPCPDEVLLAEAVVAAMPSLEMVRMVNSGTEATMSALRLARAATRRDKVLKFVGCYHGHA 147          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_ANADF (Glutamate-1-semialdehyde 2,1-aminomutase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=hemL PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.245e-38
Identity = 76/141 (53.90%), Postives = 98/141 (69.50%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHG 633
            SE+ F  A+ L PGGVNSPVRAF+ VGG P      KGSH++D+DGN+Y+DYV SWGP I+GHA  +V+  + + MK+G SFGAP   E  LAE+V   +P IE +RF +SGTEA    +R+AR FT R+ I+  EG YHG
Sbjct:    6 SEKLFAKAQTLFPGGVNSPVRAFRGVGGTPRFIARGKGSHLFDVDGNDYVDYVLSWGPMIVGHAHPEVMREVQDAMKEGASFGAPSPREITLAELVRERMPWIEKMRFCSSGTEATTAAIRVARGFTSRDDILKFEGCYHG 146          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_HELPJ (Glutamate-1-semialdehyde 2,1-aminomutase OS=Helicobacter pylori J99 GN=hemL PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.851e-38
Identity = 76/146 (52.05%), Postives = 102/146 (69.86%), Query Frame = 1
Query:  202 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            L +S   FN AK+++ GGVNSPVRAFKSV G P      KG++++D+D N YID+V SWGP I GHAD+++   +   +KKGTSFGAP  LE  LA+ +IS    ++ VR VNSGTEA M  +RLARA++ ++ +I  EG YHGH+
Sbjct:    3 LLHSINDFNEAKQVIAGGVNSPVRAFKSVKGTPPFILKGKGAYLYDVDNNHYIDFVQSWGPLIFGHADEEIEENIINVLKKGTSFGAPTELETTLAKEIISCYEGLDKVRLVNSGTEATMSAIRLARAYSQKDDLIKFEGCYHGHS 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_HELAH (Glutamate-1-semialdehyde 2,1-aminomutase OS=Helicobacter acinonychis (strain Sheeba) GN=hemL PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.851e-38
Identity = 76/146 (52.05%), Postives = 103/146 (70.55%), Query Frame = 1
Query:  202 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            L +S   FN AK+++ GGVNSPVRAFKSV G P      KG++++D+D N YID+V SWGP I GHAD+++   + + +KKGTSFGAP  LE  LA+ +IS    ++ VR VNSGTEA M  +RLARA++ ++ +I  EG YHGH+
Sbjct:    3 LLHSINDFNEAKQVIVGGVNSPVRAFKSVKGTPPFILKGKGAYLYDVDNNHYIDFVQSWGPLIFGHADEEIEENIIKALKKGTSFGAPTELETTLAKEIISCYDGLDKVRLVNSGTEATMSAIRLARAYSQKDDLIKFEGCYHGHS 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA1_BACHD (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Bacillus halodurans GN=hemL1 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.851e-38
Identity = 73/144 (50.69%), Postives = 99/144 (68.75%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGG-QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SE  F  A+ L+ GGVNSP R+FK+VGG  P+  +  KG++ WD+DGN+YIDY+ ++GP I GHA   +  A+    + G  +G P  LEN  A M+  A+PS+E VRFVNSGTEA M  +R+ARA+TGR++II   G YHGH+
Sbjct:    6 SESLFQKAQSLIVGGVNSPSRSFKAVGGGAPVFMEKAKGAYFWDVDGNQYIDYLAAYGPIITGHAHPHITNAIQRAAENGVLYGTPTKLENQFASMLQQAIPSLEKVRFVNSGTEAVMTTIRVARAYTGRDKIIKFAGCYHGHS 149          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_RENSM (Glutamate-1-semialdehyde 2,1-aminomutase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=hemL PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.947e-38
Identity = 75/145 (51.72%), Postives = 102/145 (70.34%), Query Frame = 1
Query:  202 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            + +S+E F+ A+ELMPGGVNSPVRAF SVGG P    S +G+++ D DG +Y+D V SWGPA++GHA  +V+AA+   + +G SFGA    E  LAE+V+  V ++E +R V++GTEA M  +RLAR FTGR  I+   G YHGH
Sbjct:    1 MTSSQELFDHARELMPGGVNSPVRAFGSVGGTPRFITSAQGAYLTDADGRDYVDLVCSWGPALLGHAHPEVIAAVHAAVDRGLSFGASTPAETELAELVLGRVSAVERLRMVSTGTEATMTAVRLARGFTGRNLIVKFAGCYHGH 145          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_BORPD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=hemL PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.947e-38
Identity = 77/146 (52.74%), Postives = 99/146 (67.81%), Query Frame = 1
Query:  202 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            + ++ + F+ A   +PGGVNSPVRAF+SVGG P      +G ++WD +   YIDYVGSWGPAI+GHA   V+ A+ E    G SFGAP   E  LAE++I  +PS+E VR V+SGTEA M  +RLAR  TGR +II  EG YHGH+
Sbjct:    1 MSSNAQLFDRACRSIPGGVNSPVRAFRSVGGTPRFIKRAQGPYVWDEEDTRYIDYVGSWGPAILGHAHPDVVQAVREAALDGLSFGAPTRAEVELAEVLIERLPSLEQVRLVSSGTEATMTAIRLARGATGRAKIIKFEGCYHGHS 146          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_AKKM8 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=hemL PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.947e-38
Identity = 73/145 (50.34%), Postives = 98/145 (67.59%), Query Frame = 1
Query:  202 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            +  S + F+ A+ ++PGGVNSPVRAF++V G P    S KG+++ D DG + IDY+G+WGPAI+GHA   VL A+   + +G  +G P   E  +AEM+   VPS+E VR VNSGTEA M  +RLAR +TGR +II   G YHGH
Sbjct:    1 MNQSAQLFSRARSVIPGGVNSPVRAFRNVDGDPFFVQSAKGAYITDADGRQLIDYIGTWGPAILGHAPQPVLDAVHAAVDRGLGYGIPAPAEVDMAEMITDMVPSVEKVRMVNSGTEATMSAIRLARGYTGRRKIIKFIGCYHGH 145          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_XYLFT (Glutamate-1-semialdehyde 2,1-aminomutase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=hemL PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.169e-37
Identity = 75/142 (52.82%), Postives = 93/142 (65.49%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            S   F  A+  +PGGVNSPVRAF+SVGG+P       G +++D+DG+ YIDYVGSWGP I+GH    V  A+   +  G S+GAPC  E  +AE +   VPS EMVR VNSGTEA +  +RLAR  TGR  I+  EG YHGH
Sbjct:    6 SHALFVQAQTRIPGGVNSPVRAFRSVGGEPFFVARADGPYLFDVDGHRYIDYVGSWGPMIVGHNHPAVREAVQVAISNGLSYGAPCAAEVTMAETIARLVPSCEMVRMVNSGTEATLSAIRLARGATGRNYIVKFEGCYHGH 147          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_XYLF2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Xylella fastidiosa (strain M23) GN=hemL PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.169e-37
Identity = 75/142 (52.82%), Postives = 93/142 (65.49%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            S   F  A+  +PGGVNSPVRAF+SVGG+P       G +++D+DG+ YIDYVGSWGP I+GH    V  A+   +  G S+GAPC  E  +AE +   VPS EMVR VNSGTEA +  +RLAR  TGR  I+  EG YHGH
Sbjct:    6 SHALFVQAQTRIPGGVNSPVRAFRSVGGEPFFVARADGPYLFDVDGHRYIDYVGSWGPMIVGHNHPAVREAVQVAISNGLSYGAPCAAEVTMAETIARLVPSCEMVRMVNSGTEATLSAIRLARGATGRNYIVKFEGCYHGH 147          
The following BLAST results are available for this feature:
BLAST of FC920256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_DESDA5.245e-3852.45Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulf... [more]
GSA_ANADF5.245e-3853.90Glutamate-1-semialdehyde 2,1-aminomutase OS=Anaero... [more]
GSA_HELPJ6.851e-3852.05Glutamate-1-semialdehyde 2,1-aminomutase OS=Helico... [more]
GSA_HELAH6.851e-3852.05Glutamate-1-semialdehyde 2,1-aminomutase OS=Helico... [more]
GSA1_BACHD6.851e-3850.69Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Baci... [more]
GSA_RENSM8.947e-3851.72Glutamate-1-semialdehyde 2,1-aminomutase OS=Reniba... [more]
GSA_BORPD8.947e-3852.74Glutamate-1-semialdehyde 2,1-aminomutase OS=Bordet... [more]
GSA_AKKM88.947e-3850.34Glutamate-1-semialdehyde 2,1-aminomutase OS=Akkerm... [more]
GSA_XYLFT1.169e-3752.82Glutamate-1-semialdehyde 2,1-aminomutase OS=Xylell... [more]
GSA_XYLF21.169e-3752.82Glutamate-1-semialdehyde 2,1-aminomutase OS=Xylell... [more]

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Properties
Property NameValue
Genbank descriptionC32006A02EF RVDevelop1 Citrus clementina cDNA clone C32006A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920256 ID=FC920256; Name=FC920256; organism=Citrus clementina; type=EST; length=639bp
ATCTTGATTGACCTTTGATGAGAAAAAGAGACATCTATAAAAAGTGACAC
AAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGCTTTCAT
GTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGGATCCTCTCGC
TGTAGTGTTAAAATGTCAGTCTCTGTTGAGGAGCAGAAGAAAAATTTCAC
TTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTG
GAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCT
ATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAA
CGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCACG
CAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACC
AGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAAT
CTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAACTCAGGCACAG
AAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCACTGGGAGAGAG
AGGATCATCACAATTGAGGGTTGGTATCATGGCCATGCT
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