FC920256

Overview
NameFC920256
Unique NameFC920256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:11..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_ARTS2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Arthrobacter sp. (strain FB24) GN=hemL PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.182e-35
Identity = 76/142 (53.52%), Postives = 96/142 (67.61%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            +E  F+ A++LMPGGVNSPVRAF SVGG P    S KG+++ D DG EY+D V SWGPA++GHA   VL A+   + +G SFGA    E  LA +V   VP+ E VR V++GTEA M  +RLAR FTGR+ +I   G YHGH
Sbjct:    8 NEALFDRARQLMPGGVNSPVRAFGSVGGTPRFMVSAKGAYLTDADGAEYVDLVCSWGPALLGHAHPAVLEAVHAAVDRGLSFGASTPDEANLAAIVKERVPAAERVRMVSTGTEATMTAIRLARGFTGRDLVIKFAGCYHGH 149          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_POLSQ (Glutamate-1-semialdehyde 2,1-aminomutase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=hemL PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.156e-35
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            +E  F  A++ +PGGVNSPVRAF+ VGG P      KG + WD +   YID + SWGP I GHA+ +V+ A+ +  +   S+GAP   E  LAE + + VPSIE VR V+SGTEA M  LRLAR +T R+ II  EG YHGHA
Sbjct:    7 NEVLFERAQKTIPGGVNSPVRAFRQVGGTPRFISKAKGPYFWDAENKRYIDLIMSWGPMIAGHANPEVVEAVQKAAETSFSYGAPTEGEIELAERICALVPSIEQVRMVSSGTEATMSALRLARGYTNRDLIIKFEGCYHGHA 149          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_DEIRA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Deinococcus radiodurans GN=hemL PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 4.156e-35
Identity = 75/143 (52.45%), Postives = 96/143 (67.13%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SE  F  A+ + PGGVNSPVRAF+SVGG P    S +G+++ D DG  Y+DY+GSWGP I+GH    V  A+ + +  GTSFGAP   E  LAE+++  +   E VRFV+SGTEA M  LRLAR +TGR+ I+   G YHGHA
Sbjct:   12 SEALFVRARAVTPGGVNSPVRAFRSVGGVPRFIASAQGAYLTDADGARYLDYIGSWGPMILGHNHPAVRDAVAQALASGTSFGAPNEREVELAELIVE-LTGAERVRFVSSGTEATMSALRLARGYTGRKFIVKFRGNYHGHA 153          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA1_GEOKA (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Geobacillus kaustophilus GN=hemL1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.156e-35
Identity = 68/144 (47.22%), Postives = 99/144 (68.75%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGG-QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SE+ +  A + + GGVNSP R++K+VGG  P+V +  +G++ WD+DGN+YIDY+ ++GP I GHA   +  A+    + G  +G P   E   A+M+  A+PS+E VRFVNSGTEA M  +R+ARA+TGR +I+  EG YHGH+
Sbjct:    6 SEQLYKEALQHIVGGVNSPSRSYKAVGGGAPVVMERAQGAYFWDVDGNKYIDYLAAYGPIIAGHAHPHIAEAIRRAAETGVLYGTPTPHEITFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYTGRSKIVKFEGCYHGHS 149          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_NOCFA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Nocardia farcinica GN=hemL PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.428e-35
Identity = 75/142 (52.82%), Postives = 92/142 (64.79%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            S   F+ A +++PGGVNSPVRAF+SVGG P    S  G  + D DGNEY+D V SWGP I+GHA   V+ A+      G SFGAP   E  LAE +++ V  ++ VR VNSGTEA M  +RLAR FTGR +II   G YHGH
Sbjct:   15 SARLFDRAAQVIPGGVNSPVRAFRSVGGTPRFIASADGYTLTDADGNEYVDLVCSWGPMILGHAHPAVVDAVRRAATGGLSFGAPTEAEVELAEHIVARVAPVDRVRLVNSGTEATMSAVRLARGFTGRTKIIKFAGCYHGH 156          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_FRASN (Glutamate-1-semialdehyde 2,1-aminomutase OS=Frankia sp. (strain EAN1pec) GN=hemL PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.428e-35
Identity = 73/146 (50.00%), Postives = 92/146 (63.01%), Query Frame = 1
Query:  199 TLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            T   S++ F  A+ ++PGGVNSPVRAF++VGG P    S  G  + D DG  Y+D V SWGP I+GHA   V+ A+     +GTSFG P   E  LAE+++  V  +E VR VNSGTEA M  +RLAR FTGR  I+   G YHGH
Sbjct:    6 TAPASDDLFRRAQRVVPGGVNSPVRAFRAVGGTPRFMTSGSGPRLVDADGRTYVDLVCSWGPMILGHAHPDVVQAITAAAARGTSFGTPTPGEVELAELIVERVAPVEQVRLVNSGTEATMSAIRLARGFTGRPTIVKFAGCYHGH 151          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_COREF (Glutamate-1-semialdehyde 2,1-aminomutase OS=Corynebacterium efficiens GN=hemL PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.428e-35
Identity = 82/160 (51.25%), Postives = 101/160 (63.12%), Query Frame = 1
Query:  157 VKMSVSVEEQKKNFTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            V MS S      N  +  S E F  AK   PGGVNSPVRAF SVGGQ    D   GS + D+DGNEY+D V SWGP ++GHA   VL A+ +T+  G SFGAP + E  LA+ +I+   S+E VR VNSGTEA M  +RLAR +T R +I+  +G YHGH
Sbjct:    2 VDMSASPSGTSAN--VSRSIEWFEKAKMFTPGGVNSPVRAFGSVGGQARFIDRAHGSTLIDVDGNEYVDLVCSWGPMLMGHAHPAVLEAVQKTIVDGLSFGAPTIGEVELAQDIINRT-SVEEVRLVNSGTEATMSAVRLARGYTQRPKILKFDGCYHGH 158          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_CLOAB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Clostridium acetobutylicum GN=hemL PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.089e-35
Identity = 68/142 (47.89%), Postives = 97/142 (68.31%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            ++E F  +KE MPGGVNSPVRA+  +   P +  S K SH++D +G EYID++ +WGP I+GH + +VL  + E + +G  FGAP  LE  LA+ + + V ++EM+R VNSGTEA M  ++LAR +T R++II   G YHGH
Sbjct:    3 NKEIFEESKEYMPGGVNSPVRAYMDLNIDPPIIKSGKDSHLFDEEGKEYIDFIEAWGPMILGHKNQKVLNEVKEVLDEGVGFGAPTSLELKLAKYICTTVDNVEMIRMVNSGTEATMSAVKLARGYTKRDKIIKFAGCYHGH 144          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_STRCO (Glutamate-1-semialdehyde 2,1-aminomutase OS=Streptomyces coelicolor GN=hemL PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.259e-35
Identity = 73/142 (51.41%), Postives = 94/142 (66.20%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            S+  F+ A  + PGGVNSPVRAF++VGG P    S  G ++ D DG EY+D V SWGP I+GHA  +V+AA+ E + +GTSFG P   E  LAE ++  V  +E VR V+SGTEA M  +RLAR FT R ++I   G YHGH
Sbjct:   13 SQALFDRAAAVTPGGVNSPVRAFRAVGGTPRFMVSGTGPYLTDADGREYVDLVCSWGPMILGHAHPEVIAAVQEAVARGTSFGTPAEGEVALAEAMVERVAPLEEVRLVSSGTEATMSAIRLARGFTRRTKVIKFAGCYHGH 154          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_NOCSJ (Glutamate-1-semialdehyde 2,1-aminomutase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=hemL PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.259e-35
Identity = 72/142 (50.70%), Postives = 95/142 (66.90%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            S   F  A+ + PGGVNSPVRAF +VGG P    S +G+ + D DGNEY+D + SWGP ++GHA  +V AA+   + +GTS+GAP   E  LAE + +  P +E VRFV+SGTEA M  +RLAR FTGR+ ++   G YHGH
Sbjct:   12 SAALFERARAVTPGGVNSPVRAFNAVGGTPRFIRSARGAWLTDADGNEYVDLICSWGPMLLGHAHPEVQAAVSAAVARGTSYGAPTEPEVELAEEIAARAP-VERVRFVSSGTEATMSAIRLARGFTGRDVVVKFAGCYHGH 152          
The following BLAST results are available for this feature:
BLAST of FC920256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_ARTS23.182e-3553.52Glutamate-1-semialdehyde 2,1-aminomutase OS=Arthro... [more]
GSA_POLSQ4.156e-3551.05Glutamate-1-semialdehyde 2,1-aminomutase OS=Polynu... [more]
GSA_DEIRA4.156e-3552.45Glutamate-1-semialdehyde 2,1-aminomutase OS=Deinoc... [more]
GSA1_GEOKA4.156e-3547.22Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Geob... [more]
GSA_NOCFA5.428e-3552.82Glutamate-1-semialdehyde 2,1-aminomutase OS=Nocard... [more]
GSA_FRASN5.428e-3550.00Glutamate-1-semialdehyde 2,1-aminomutase OS=Franki... [more]
GSA_COREF5.428e-3551.25Glutamate-1-semialdehyde 2,1-aminomutase OS=Coryne... [more]
GSA_CLOAB7.089e-3547.89Glutamate-1-semialdehyde 2,1-aminomutase OS=Clostr... [more]
GSA_STRCO9.259e-3551.41Glutamate-1-semialdehyde 2,1-aminomutase OS=Strept... [more]
GSA_NOCSJ9.259e-3550.70Glutamate-1-semialdehyde 2,1-aminomutase OS=Nocard... [more]

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Properties
Property NameValue
Genbank descriptionC32006A02EF RVDevelop1 Citrus clementina cDNA clone C32006A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920256 ID=FC920256; Name=FC920256; organism=Citrus clementina; type=EST; length=639bp
ATCTTGATTGACCTTTGATGAGAAAAAGAGACATCTATAAAAAGTGACAC
AAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGCTTTCAT
GTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGGATCCTCTCGC
TGTAGTGTTAAAATGTCAGTCTCTGTTGAGGAGCAGAAGAAAAATTTCAC
TTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTG
GAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCT
ATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAA
CGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCACG
CAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACC
AGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAAT
CTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAACTCAGGCACAG
AAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCACTGGGAGAGAG
AGGATCATCACAATTGAGGGTTGGTATCATGGCCATGCT
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