FC920256

Overview
NameFC920256
Unique NameFC920256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:11..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA1_STAAT (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.068e-46
Identity = 93/143 (65.03%), Postives = 108/143 (75.52%), Query Frame = 1 
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I+  EG YHGH+
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHS 148
[Close]
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA1_STAAS (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain MSSA476) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.068e-46
Identity = 93/143 (65.03%), Postives = 108/143 (75.52%), Query Frame = 1 
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I+  EG YHGH+
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHS 148
[Close]
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA1_STAAR (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain MRSA252) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.068e-46
Identity = 93/143 (65.03%), Postives = 108/143 (75.52%), Query Frame = 1 
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I+  EG YHGH+
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHS 148
[Close]
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA1_STAAN (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain N315) GN=hemL1 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.068e-46
Identity = 93/143 (65.03%), Postives = 108/143 (75.52%), Query Frame = 1 
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I+  EG YHGH+
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHS 148
[Close]
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA1_STAAM (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=hemL1 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.068e-46
Identity = 93/143 (65.03%), Postives = 108/143 (75.52%), Query Frame = 1 
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I+  EG YHGH+
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHS 148
[Close]
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA1_STAAE (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain Newman) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.068e-46
Identity = 93/143 (65.03%), Postives = 108/143 (75.52%), Query Frame = 1 
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I+  EG YHGH+
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHS 148
[Close]
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA1_STAAC (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain COL) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.068e-46
Identity = 93/143 (65.03%), Postives = 108/143 (75.52%), Query Frame = 1 
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I+  EG YHGH+
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHS 148
[Close]
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA1_STAAB (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.068e-46
Identity = 93/143 (65.03%), Postives = 108/143 (75.52%), Query Frame = 1 
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I+  EG YHGH+
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHS 148
[Close]
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA1_STAA9 (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain JH9) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.068e-46
Identity = 93/143 (65.03%), Postives = 108/143 (75.52%), Query Frame = 1 
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I+  EG YHGH+
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHS 148
[Close]
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA1_STAA8 (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain NCTC 8325) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.068e-46
Identity = 93/143 (65.03%), Postives = 108/143 (75.52%), Query Frame = 1 
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I+  EG YHGH+
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHS 148
The following BLAST results are available for this feature:
BLAST of FC920256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA1_STAAT3.068e-4665.03Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAS3.068e-4665.03Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAR3.068e-4665.03Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAN3.068e-4665.03Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAM3.068e-4665.03Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAE3.068e-4665.03Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAC3.068e-4665.03Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAAB3.068e-4665.03Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAA93.068e-4665.03Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAA83.068e-4665.03Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionC32006A02EF RVDevelop1 Citrus clementina cDNA clone C32006A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920256 ID=FC920256; Name=FC920256; organism=Citrus clementina; type=EST; length=639bp
ATCTTGATTGACCTTTGATGAGAAAAAGAGACATCTATAAAAAGTGACAC
AAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGCTTTCAT
GTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGGATCCTCTCGC
TGTAGTGTTAAAATGTCAGTCTCTGTTGAGGAGCAGAAGAAAAATTTCAC
TTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTG
GAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCT
ATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAA
CGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCACG
CAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACC
AGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAAT
CTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAACTCAGGCACAG
AAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCACTGGGAGAGAG
AGGATCATCACAATTGAGGGTTGGTATCATGGCCATGCT
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