FC920256

Overview
NameFC920256
Unique NameFC920256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:11..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA1_STAA3 (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain USA300) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.068e-46
Identity = 93/143 (65.03%), Postives = 108/143 (75.52%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I+  EG YHGH+
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHS 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA1_STAA2 (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain JH1) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.068e-46
Identity = 93/143 (65.03%), Postives = 108/143 (75.52%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I+  EG YHGH+
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHS 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA1_STAA1 (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.068e-46
Identity = 93/143 (65.03%), Postives = 108/143 (75.52%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            SEEA  VA+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH D QV++ L E + KGTSFGA  LLEN LA++VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I+  EG YHGH+
Sbjct:    6 SEEAMKVAETLMPGGVNSPVRAFKSVDTPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHRDPQVISHLHEAIDKGTSFGASTLLENKLAQLVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFEGCYHGHS 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA2_OCEIH (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Oceanobacillus iheyensis GN=hemL2 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.989e-45
Identity = 92/146 (63.01%), Postives = 108/146 (73.97%), Query Frame = 1
Query:  199 TLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            TL  S +A+  A +LMPGGVNSPVRAFKSVG  PI     KGS + DID NEYIDYV SWGP I+GH+D++V+  L +   KGTSFGAP LLEN LA++VI  VPSIEMVR VNSGTEA M  +RLAR +T R+ I+  EG YHGH
Sbjct:    2 TLNQSIDAYKEAVDLMPGGVNSPVRAFKSVGMNPIFMKEGKGSKIVDIDNNEYIDYVLSWGPLILGHSDERVVKKLQDITAKGTSFGAPTLLENDLAKLVIDRVPSIEMVRMVNSGTEATMSAIRLARGYTDRDLILKFEGSYHGH 147          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA2_BACCN (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.597e-45
Identity = 90/145 (62.07%), Postives = 110/145 (75.86%), Query Frame = 1
Query:  202 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            L  S +AF  A++LMPGGVNSPVRAFKSVG  P+  +  KGS ++DIDGNEYIDYV SWGP I GHA+++V+ +L    +KGTSFGAP  +EN LA++VI  VPSIE+VR VNSGTEA M  LRLAR +TGR +I+   G YHGH
Sbjct:    4 LDKSIKAFEEAQDLMPGGVNSPVRAFKSVGMNPLFMEQGKGSKVYDIDGNEYIDYVLSWGPLIHGHANERVVESLKAVAEKGTSFGAPTEIENKLAQLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGH 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA2_GEOTN (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.392e-45
Identity = 91/144 (63.19%), Postives = 108/144 (75.00%), Query Frame = 1
Query:  205 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            + S+ A+  A  LMPGGVNSPVRAFKSVG  PI     +G+ ++DIDGNEYIDYV SWGP I+GHAD QV+ AL    ++GTSFGAP LLEN LA++VI  VPS+E+VR VNSGTEA M  LRLAR +T R +II  EG YHGH
Sbjct:    5 ERSKAAYEEAVTLMPGGVNSPVRAFKSVGMTPIFMARGQGAKIYDIDGNEYIDYVLSWGPLILGHADPQVVEALKRVAEQGTSFGAPTLLENELAKLVIERVPSVEIVRMVNSGTEATMSALRLARGYTKRNKIIKFEGSYHGH 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA2_BACWK (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Bacillus weihenstephanensis (strain KBAB4) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.392e-45
Identity = 90/139 (64.75%), Postives = 106/139 (76.26%), Query Frame = 1
Query:  220 AFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            AF  A+ LMPGGVNSPVRAFKSVG  P+  +  KGS ++DIDGNEYIDYV SWGP I GHA+D+V+ AL    +KGTSFGAP  +EN LA++VI  VPSIE+VR VNSGTEA M  LRLAR +TGR +I+   G YHGH
Sbjct:   10 AFEEAQNLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAEKGTSFGAPTEIENKLAQLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGH 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA2_STAHJ (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.430e-45
Identity = 90/145 (62.07%), Postives = 107/145 (73.79%), Query Frame = 1
Query:  205 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            + S EA  +A+ LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH ++QV+  L E + +GTSFGA  L EN LAE+VI  VPSIE VR V+SGTEA +  LRLAR +TGR +II  EG YHGH+
Sbjct:    4 EKSIEAMKIAENLMPGGVNSPVRAFKSVDTPAIFMDHAKGSRIYDIDGNEYIDYVLSWGPLILGHKNEQVIKKLHEAVNRGTSFGASTLEENKLAELVIERVPSIEKVRMVSSGTEATLAALRLARGYTGRNKIIKFEGCYHGHS 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA2_BACCR (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.430e-45
Identity = 89/139 (64.03%), Postives = 107/139 (76.98%), Query Frame = 1
Query:  220 AFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            AF  A++LMPGGVNSPVRAFKSVG  P+  +  KGS ++DIDGNEYIDYV SWGP I GHA+D+V+ AL    ++GTSFGAP  +EN LA++VI  VPSIE+VR VNSGTEA M  LRLAR +TGR +I+   G YHGH
Sbjct:   10 AFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKSVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGH 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA2_BACC4 (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Bacillus cereus (strain B4264) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.430e-45
Identity = 89/139 (64.03%), Postives = 107/139 (76.98%), Query Frame = 1
Query:  220 AFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            AF  A++LMPGGVNSPVRAFKSVG  P+  +  KGS ++DIDGNEYIDYV SWGP I GHA+D+V+ AL    ++GTSFGAP  +EN LA++VI  VPSIE+VR VNSGTEA M  LRLAR +TGR +I+   G YHGH
Sbjct:   10 AFEEAQDLMPGGVNSPVRAFKSVGMNPLFMERGKGSKVYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKSVAERGTSFGAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYTGRNKILKFIGCYHGH 148          
The following BLAST results are available for this feature:
BLAST of FC920256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA1_STAA33.068e-4665.03Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAA23.068e-4665.03Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_STAA13.068e-4665.03Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA2_OCEIH1.989e-4563.01Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Ocea... [more]
GSA2_BACCN2.597e-4562.07Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Baci... [more]
GSA2_GEOTN3.392e-4563.19Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Geob... [more]
GSA2_BACWK3.392e-4564.75Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Baci... [more]
GSA2_STAHJ4.430e-4562.07Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Stap... [more]
GSA2_BACCR4.430e-4564.03Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Baci... [more]
GSA2_BACC44.430e-4564.03Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionC32006A02EF RVDevelop1 Citrus clementina cDNA clone C32006A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920256 ID=FC920256; Name=FC920256; organism=Citrus clementina; type=EST; length=639bp
ATCTTGATTGACCTTTGATGAGAAAAAGAGACATCTATAAAAAGTGACAC
AAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGCTTTCAT
GTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGGATCCTCTCGC
TGTAGTGTTAAAATGTCAGTCTCTGTTGAGGAGCAGAAGAAAAATTTCAC
TTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTG
GAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCT
ATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAA
CGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCACG
CAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACC
AGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAAT
CTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAACTCAGGCACAG
AAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCACTGGGAGAGAG
AGGATCATCACAATTGAGGGTTGGTATCATGGCCATGCT
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