FC920256

Overview
NameFC920256
Unique NameFC920256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:11..649. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA2_GEOKA (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Geobacillus kaustophilus GN=hemL2 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.683e-44
Identity = 89/144 (61.81%), Postives = 109/144 (75.69%), Query Frame = 1
Query:  205 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            + S+ A+  A +LMPGGVNSPVRAFKSVG  PI     +G+ ++DIDGNEYIDYV SWGP I+GHA+ QV+ AL    ++GTSFGAP LLEN LA++VI  VPS+E+VR VNSGTEA M  LRLAR +T R +I+  EG YHGH
Sbjct:    5 ERSKTAYEEAVKLMPGGVNSPVRAFKSVGMTPIFMARGQGAKIYDIDGNEYIDYVLSWGPLILGHANPQVVEALKRVAEQGTSFGAPTLLENELAKLVIERVPSVEIVRMVNSGTEATMSALRLARGYTKRNKIMKFEGSYHGH 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_BACSU (Glutamate-1-semialdehyde 2,1-aminomutase OS=Bacillus subtilis GN=hemL PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.199e-44
Identity = 87/144 (60.42%), Postives = 110/144 (76.39%), Query Frame = 1
Query:  205 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            + S+ AF  A++LMPGGVNSPVRAFKSV   PI  +  KGS ++DIDGNEYIDYV SWGP I+GH +D+V+ +L +  + GTSFGAP  +EN LA++VI  VPS+E+VR V+SGTEA M  LRLAR +TGR +I+  EG YHGH
Sbjct:    5 EKSKTAFKEAQKLMPGGVNSPVRAFKSVDMDPIFMERGKGSKIFDIDGNEYIDYVLSWGPLILGHTNDRVVESLKKVAEYGTSFGAPTEVENELAKLVIDRVPSVEIVRMVSSGTEATMSALRLARGYTGRNKILKFEGCYHGH 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA2_ANOFW (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=hemL2 PE=3 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 2.872e-44
Identity = 87/144 (60.42%), Postives = 109/144 (75.69%), Query Frame = 1
Query:  205 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            + S+ A+  A +LMPGGVNSPVRAFK+V   PI     KGS ++DIDGNEYIDYV SWGP I+GHA+DQV+ AL    + GTSFGAP L+EN LA++V+  +PSIE++R V+SGTEA M  LRLAR +TGR +I+  EG YHGH
Sbjct:    5 ERSKAAYAEAVKLMPGGVNSPVRAFKAVKMDPIFMARGKGSKIYDIDGNEYIDYVLSWGPLILGHANDQVVEALKRVAETGTSFGAPTLIENELAKLVMERMPSIEIIRMVSSGTEATMSALRLARGYTGRNKIVKFEGCYHGH 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_SYNWW (Glutamate-1-semialdehyde 2,1-aminomutase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=hemL PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.750e-44
Identity = 85/145 (58.62%), Postives = 106/145 (73.10%), Query Frame = 1
Query:  205 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            + S E F  A+E +PGGVNSPVRAFK+VG  P+      GS ++D+DGNEYIDYV SWGP I+GH+  QV+ A+ E  +KG+SFGAPC  E  LA+++  A+PS+E VR VNSGTEA M  +RLARAFTGR  I+  EG YHGHA
Sbjct:    4 ERSIELFARAREYIPGGVNSPVRAFKAVGNNPLFIKEGHGSKIYDVDGNEYIDYVCSWGPLILGHSHPQVVQAICEAAEKGSSFGAPCEQEIELAQLICEAIPSVEKVRMVNSGTEATMSAVRLARAFTGRNHIVKFEGCYHGHA 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_HALHL (Glutamate-1-semialdehyde 2,1-aminomutase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=hemL PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.750e-44
Identity = 81/145 (55.86%), Postives = 105/145 (72.41%), Query Frame = 1
Query:  202 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            ++ + + F  A+EL+PGGVNSPVRAFK VGG+PI F+  +G +MWD+DG  Y+DYV SWGP + GHAD +++  + ET  KG SFG P  LE  +A  +   VPS+EMVR VNSGTEA M  LRLAR FTGR++I+  +G YHGH
Sbjct:    1 MQRTHQLFQQARELIPGGVNSPVRAFKGVGGEPIFFERGEGPYMWDVDGKRYVDYVCSWGPLVAGHADPEIVRRVQETAAKGLSFGTPVELEVEMARTLCQHVPSLEMVRLVNSGTEATMSALRLARGFTGRDKIVKFQGNYHGH 145          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_CHLAD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=hemL PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.750e-44
Identity = 84/143 (58.74%), Postives = 104/143 (72.73%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            S+  F  A+ ++PGGVNSPVRAF+ VGG PI F+  +G+H+WD+DGN YIDYV SWGP ++GHA   V+ A+    ++GTSFGAP  LE  LA +V+  VPSIE +RFVNSGTEA M  LRLARA TGR  I+   G YHGHA
Sbjct:   11 SQANFAAAQAVIPGGVNSPVRAFRGVGGSPIFFERGQGAHIWDVDGNRYIDYVLSWGPLLLGHAHPAVVNAIATQAQRGTSFGAPTELETDLARLVLDLVPSIEQIRFVNSGTEATMSALRLARAATGRRLIVKFNGCYHGHA 153          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA2_EXISA (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.750e-44
Identity = 88/142 (61.97%), Postives = 105/142 (73.94%), Query Frame = 1
Query:  211 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            S+EAF  A+ LMPGGVNSPVRA+KSVG  PI  +  +GS ++DIDGNEYIDYV SWGP I+GH D  V  A+ E  +KG +FG P  LE  +AE+VI  VPSIEMVR VNSGTEA M  LRLAR +TG+ +I+  EG YHGH
Sbjct:    8 SQEAFEQARPLMPGGVNSPVRAYKSVGMTPIFAERGEGSRVYDIDGNEYIDYVLSWGPLILGHRDPVVTKAIQEQAEKGWTFGTPTELETKMAELVIDRVPSIEMVRMVNSGTEATMAALRLARGYTGKTKILKFEGCYHGH 149          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA_ALCBS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=hemL PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.355e-44
Identity = 83/144 (57.64%), Postives = 107/144 (74.31%), Query Frame = 1
Query:  205 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            K+SE+ F  A++ +PGGVNSPVRAFKSVGG P+ F S +G+H++D D N+YIDYVGSWGP I+GH    V+AA+   +++G SFGAP   E  +A+ V   VPS++MVR VNSGTEA M  +RLAR +TGR +II  EG YHGH
Sbjct:    4 KHSEQLFRQAQKHIPGGVNSPVRAFKSVGGTPVFFHSARGAHLFDEDDNKYIDYVGSWGPMILGHNHPHVVAAVQAAVEQGLSFGAPTATEVAMADKVCELVPSMDMVRMVNSGTEATMSAIRLARGYTGRNKIIKFEGCYHGH 147          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA2_STAS1 (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.355e-44
Identity = 89/144 (61.81%), Postives = 106/144 (73.61%), Query Frame = 1
Query:  208 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGHA 639
            NSE+A   A+ELMPGGVNSPVRAFKSV    I  D  +GS ++DIDGNEYIDYV SWGP I+GH + QV+  + E + KGTSFGA  L EN LAE+VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I+   G YHGH+
Sbjct:    5 NSEKAMAKAEELMPGGVNSPVRAFKSVDTPAIFMDHGEGSRIYDIDGNEYIDYVLSWGPLILGHKNKQVIEKIHEAVDKGTSFGASTLQENKLAELVIERVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIVKFVGCYHGHS 148          
BLAST of FC920256 vs. ExPASy Swiss-Prot
Match: GSA2_BACLD (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 8.355e-44
Identity = 86/144 (59.72%), Postives = 108/144 (75.00%), Query Frame = 1
Query:  205 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIITIEGWYHGH 636
            + S+ AF  A+ +MPGGVNSPVRAFKSV   PI  +  KGS ++DIDGNEYIDYV SWGP I+GH++++V+  + +  + GTSFGAP  LE  LAE+VI  VPSIE+VR V+SGTEA M  LRLAR +TGR +I+  EG YHGH
Sbjct:    5 EKSKAAFEEAQRVMPGGVNSPVRAFKSVNMDPIFMERGKGSKIYDIDGNEYIDYVLSWGPLILGHSNEKVVKEIQKAAEHGTSFGAPTELETELAELVIDRVPSIEIVRMVSSGTEATMSALRLARGYTGRNKIVKFEGCYHGH 148          
The following BLAST results are available for this feature:
BLAST of FC920256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA2_GEOKA1.683e-4461.81Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Geob... [more]
GSA_BACSU2.199e-4460.42Glutamate-1-semialdehyde 2,1-aminomutase OS=Bacill... [more]
GSA2_ANOFW2.872e-4460.42Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Anox... [more]
GSA_SYNWW3.750e-4458.62Glutamate-1-semialdehyde 2,1-aminomutase OS=Syntro... [more]
GSA_HALHL3.750e-4455.86Glutamate-1-semialdehyde 2,1-aminomutase OS=Halorh... [more]
GSA_CHLAD3.750e-4458.74Glutamate-1-semialdehyde 2,1-aminomutase OS=Chloro... [more]
GSA2_EXISA3.750e-4461.97Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Exig... [more]
GSA_ALCBS8.355e-4457.64Glutamate-1-semialdehyde 2,1-aminomutase OS=Alcani... [more]
GSA2_STAS18.355e-4461.81Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Stap... [more]
GSA2_BACLD8.355e-4459.72Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionC32006A02EF RVDevelop1 Citrus clementina cDNA clone C32006A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920256 ID=FC920256; Name=FC920256; organism=Citrus clementina; type=EST; length=639bp
ATCTTGATTGACCTTTGATGAGAAAAAGAGACATCTATAAAAAGTGACAC
AAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGCTTTCAT
GTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGGATCCTCTCGC
TGTAGTGTTAAAATGTCAGTCTCTGTTGAGGAGCAGAAGAAAAATTTCAC
TTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTG
GAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCT
ATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAA
CGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCACG
CAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACC
AGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAAT
CTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAACTCAGGCACAG
AAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCACTGGGAGAGAG
AGGATCATCACAATTGAGGGTTGGTATCATGGCCATGCT
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