FC920257

Overview
NameFC920257
Unique NameFC920257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:67..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_ACAM1 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Acaryochloris marina (strain MBIC 11017) GN=hemL PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 5.861e-45
Identity = 86/116 (74.14%), Postives = 98/116 (84.48%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            SEE F  A++LMPGGV+SPVRAFKSVGGQPI FD VKG+H+WD+DGN+YIDYVG+WGPAI G    +VL AL E + KGTSFGAPCLLENVLAEMVI AVPS E+  FVNSGT+AC
Sbjct:   11 SEEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKGAHVWDVDGNQYIDYVGTWGPAICGHAHPEVLTALKEALDKGTSFGAPCLLENVLAEMVIDAVPSVEVVRFVNSGTEAC 126          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_PROMT (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain NATL2A) GN=hemL PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 3.799e-44
Identity = 86/121 (71.07%), Postives = 96/121 (79.34%), Query Frame = 2
Query:  140 ITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            +  K SEE F  AK LMPGGV+SPVRAFKSV G PI FD VKG + WD+DGN YIDYVGSWGPAI G    +V+AAL ET++KGTSFGAPC+LEN LAEMVI AVPS EM  FVNSGT+AC
Sbjct:    5 LNTKRSEEIFGAAKNLMPGGVSSPVRAFKSVEGDPIVFDRVKGPYAWDVDGNRYIDYVGSWGPAICGHAHPEVIAALQETLEKGTSFGAPCVLENQLAEMVIDAVPSVEMVRFVNSGTEAC 125          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_SYNS3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain CC9311) GN=hemL PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 4.962e-44
Identity = 83/122 (68.03%), Postives = 98/122 (80.33%), Query Frame = 2
Query:  137 NITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            N+   +SE  F+ AK LMPGGV+SPVRAFKSVGGQPI FD VKG + WD+DGN+Y+DY+GSWGPAI G    +V++AL E ++KGTSFGAPC LEN LAEMVI AVPS EM  FVNSGT+AC
Sbjct:   10 NLNTSHSEAIFSAAKALMPGGVSSPVRAFKSVGGQPIVFDRVKGPYAWDVDGNKYVDYIGSWGPAICGHAHPEVISALQEAIEKGTSFGAPCALENTLAEMVIEAVPSVEMVRFVNSGTEAC 131          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_PROM1 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain NATL1A) GN=hemL PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 4.962e-44
Identity = 86/118 (72.88%), Postives = 95/118 (80.51%), Query Frame = 2
Query:  149 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            K SEE F  AK LMPGGV+SPVRAFKSV G PI FD VKG + WD+DGN YIDYVGSWGPAI G    +V+AAL ET++KGTSFGAPC+LEN LAEMVI AVPS EM  FVNSGT+AC
Sbjct:    4 KRSEEIFGAAKNLMPGGVSSPVRAFKSVEGDPIVFDRVKGPYAWDVDGNRYIDYVGSWGPAICGHAHPEVIAALQETLEKGTSFGAPCVLENQLAEMVIDAVPSVEMVRFVNSGTEAC 121          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CYAA5 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanothece sp. (strain ATCC 51142) GN=hemL PE=3 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 6.481e-44
Identity = 83/116 (71.55%), Postives = 99/116 (85.34%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            SE+ F  A++LMPGGV+SPVRAFKSVGGQPI FD VKG+++WD+DGN+YIDYVG+WGPAI G    +V+AAL + + +GTSFGAPCLLENVLAEMVI AVPS EM  FVNSGT+AC
Sbjct:   12 SEDIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDHVKGAYIWDVDGNQYIDYVGTWGPAICGHAHPEVIAALHDALDRGTSFGAPCLLENVLAEMVIDAVPSIEMVRFVNSGTEAC 127          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_PROM0 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9301) GN=hemL PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.105e-43
Identity = 85/116 (73.28%), Postives = 95/116 (81.90%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            SEE F+ A+ELMPGGV+SPVRAFKSVGGQPI FD VKG   WDIDGN YIDY+GSWGPAI G    +V+ AL E ++KGTSFGAPC+LEN LAEMVI AVPS EM  FVNSGT+AC
Sbjct:   10 SEEIFSAAQELMPGGVSSPVRAFKSVGGQPIVFDRVKGPFAWDIDGNRYIDYIGSWGPAICGHAHPEVITALHEAIEKGTSFGAPCVLENKLAEMVIDAVPSVEMVRFVNSGTEAC 125          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_PROMP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=hemL PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.444e-43
Identity = 85/116 (73.28%), Postives = 95/116 (81.90%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            SEE F+ A ELMPGGV+SPVRAFKSVGGQPI FD VKG + WDIDGN YIDY+GSWGPAI G    +V+ AL E ++KGTSFGAPC+LEN LAEMVI AVPS EM  FVNSGT+AC
Sbjct:   10 SEEVFSSALELMPGGVSSPVRAFKSVGGQPIVFDRVKGPYAWDIDGNRYIDYIGSWGPAICGHAHPEVITALQEAIEKGTSFGAPCVLENKLAEMVIDAVPSVEMVRFVNSGTEAC 125          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_NOSP7 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=hemL PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.444e-43
Identity = 86/124 (69.35%), Postives = 101/124 (81.45%), Query Frame = 2
Query:  137 NITLKN--SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            N T+K   S+E F  A+ LMPGGV+SPVRAFKSVGGQPI FD VKG+++WD+DGN+YIDYVG+WGPAI G    +V+AAL E ++KGTSFGAP  LENVLAEMVI AVPS EM  FVNSGT+AC
Sbjct:    3 NTTIKTTKSQEVFAAAQNLMPGGVSSPVRAFKSVGGQPIVFDRVKGAYIWDVDGNQYIDYVGTWGPAICGHAHPEVIAALHEALEKGTSFGAPSTLENVLAEMVIDAVPSIEMVRFVNSGTEAC 126          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_PROM9 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9312) GN=hemL PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.463e-43
Identity = 85/116 (73.28%), Postives = 94/116 (81.03%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            SEE F+ A+ELMPGGV+SPVRAFKSVGGQPI FD VKG   WDIDGN YIDY+GSWGPAI G    +V  AL E ++KGTSFGAPC+LEN LAEMVI AVPS EM  FVNSGT+AC
Sbjct:   10 SEEIFSAAQELMPGGVSSPVRAFKSVGGQPIVFDRVKGPFAWDIDGNRYIDYIGSWGPAICGHAHPEVTTALQEAIEKGTSFGAPCVLENKLAEMVIDAVPSVEMVRFVNSGTEAC 125          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_PROM2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9215) GN=hemL PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.201e-43
Identity = 84/121 (69.42%), Postives = 95/121 (78.51%), Query Frame = 2
Query:  140 ITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            +    SEE F+ A++LMPGGV+SPVRAFKSVGGQPI FD VKG   WDIDGN YIDY+GSWGPAI G    +V  AL E ++KGTSFGAPC+LEN LAEMVI AVPS EM  FVNSGT+AC
Sbjct:    5 LNYNKSEEIFSAAQQLMPGGVSSPVRAFKSVGGQPIVFDRVKGPFAWDIDGNRYIDYIGSWGPAICGHAHPEVTTALQEAIEKGTSFGAPCVLENKLAEMVIDAVPSVEMVRFVNSGTEAC 125          
The following BLAST results are available for this feature:
BLAST of FC920257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_ACAM15.861e-4574.14Glutamate-1-semialdehyde 2,1-aminomutase OS=Acaryo... [more]
GSA_PROMT3.799e-4471.07Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_SYNS34.962e-4468.03Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_PROM14.962e-4472.88Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_CYAA56.481e-4471.55Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanot... [more]
GSA_PROM01.105e-4373.28Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_PROMP1.444e-4373.28Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_NOSP71.444e-4369.35Glutamate-1-semialdehyde 2,1-aminomutase OS=Nostoc... [more]
GSA_PROM92.463e-4373.28Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_PROM24.201e-4369.42Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]

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Properties
Property NameValue
Genbank descriptionC32006A03EF RVDevelop1 Citrus clementina cDNA clone C32006A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920257 ID=FC920257; Name=FC920257; organism=Citrus clementina; type=EST; length=502bp
GGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGTTTTCATGTTCAT
CAAAGCTCACCAAGAGAATTTCTTCTTCTACTGGATCCTCTCGCTGTAGT
GTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGAAAAATATCACTTTAAA
AAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTGGAGGTG
TAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCTATTGAG
TTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAACGAGTA
CATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCAGCCAGATG
ATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACCAGCTTT
GGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAATCTCAGC
TGTTCCAAGCAGAGAAATGCGTTGTTTTGTTAACTCAGGCACACAAGCAT
GC
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