FC920257

Overview
NameFC920257
Unique NameFC920257
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length502
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:67..568. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CYAP4 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=hemL PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.201e-43
Identity = 83/116 (71.55%), Postives = 95/116 (81.90%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            SEE F  A++LMPGGVNSPVRAFKSVGG PI FD V+G+++WD+DGN+YIDYVGSWGPAI G    +V+ AL   + KGTSFGAPCLLENVLAEMVI  VPS EM  FVNSGT+AC
Sbjct:   11 SEEIFAAAQKLMPGGVNSPVRAFKSVGGNPIVFDRVEGAYVWDVDGNQYIDYVGSWGPAICGHAHPEVIKALHAALDKGTSFGAPCLLENVLAEMVIDGVPSIEMVRFVNSGTEAC 126          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_PROMS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain AS9601) GN=hemL PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.486e-43
Identity = 84/116 (72.41%), Postives = 94/116 (81.03%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            SEE F+ A++LMPGGV+SPVRAFKSVGGQPI FD VKG   WDIDGN YIDY+GSWGPAI G    +V  AL E ++KGTSFGAPC+LEN LAEMVI AVPS EM  FVNSGT+AC
Sbjct:   10 SEEIFSAAQQLMPGGVSSPVRAFKSVGGQPIVFDRVKGPFAWDIDGNRYIDYIGSWGPAICGHAHPEVTTALQEAIEKGTSFGAPCVLENKLAEMVIDAVPSVEMVRFVNSGTEAC 125          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_ANAVT (Glutamate-1-semialdehyde 2,1-aminomutase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=hemL PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 5.486e-43
Identity = 85/124 (68.55%), Postives = 100/124 (80.65%), Query Frame = 2
Query:  137 NITLKN--SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            N T+K   S+E F  A+ LMPGGV+SPVRAFKSVGGQPI FD VKG+++WD+DGN+YIDYVG+WGPAI G     V+ AL E ++KGTSFGAP  LENVLAEMVI+AVPS EM  FVNSGT+AC
Sbjct:    3 NTTIKTTKSQEIFAAAQNLMPGGVSSPVRAFKSVGGQPIVFDHVKGAYIWDVDGNQYIDYVGTWGPAICGHAHPDVIGALHEALEKGTSFGAPSFLENVLAEMVIAAVPSIEMVRFVNSGTEAC 126          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_SYNSC (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain CC9605) GN=hemL PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 9.358e-43
Identity = 82/117 (70.09%), Postives = 95/117 (81.20%), Query Frame = 2
Query:  152 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            +S+  F  A+ LMPGGV+SPVRAFKSVGGQPI FD VKG + WD+DGN+YIDY+GSWGPAI G    +V+AAL E ++KGTSFGAPC LEN LAEMVI AVPS EM  FVNSGT+AC
Sbjct:    5 HSQAIFGAAQALMPGGVSSPVRAFKSVGGQPIVFDRVKGPYAWDVDGNKYIDYIGSWGPAICGHAHPEVIAALQEAIEKGTSFGAPCALENTLAEMVIDAVPSVEMVRFVNSGTEAC 121          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_CYAP8 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanothece sp. (strain PCC 8801) GN=hemL PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.222e-42
Identity = 82/116 (70.69%), Postives = 97/116 (83.62%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            SEE F  A++LMPGGV+SPVRAFKSVGGQPI FD VKG+++WD+DGN+YIDYVG+WGPAI G     V+AAL E ++KGTSFGAP + EN+LAEMVI AVPS EM  FVNSGT+AC
Sbjct:   12 SEEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVKGAYIWDVDGNQYIDYVGTWGPAICGHAHPDVIAALHEALEKGTSFGAPSVQENILAEMVIEAVPSIEMVRFVNSGTEAC 127          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_ANASP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Anabaena sp. (strain PCC 7120) GN=hemL PE=3 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 1.222e-42
Identity = 84/124 (67.74%), Postives = 100/124 (80.65%), Query Frame = 2
Query:  137 NITLKN--SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            N T+K   S+E F  A+ LMPGGV+SPVRAFKSVGGQPI FD VKG+++WD+DGN+YIDYVG+WGPAI G     V+ AL + ++KGTSFGAP  LENVLAEMVI+AVPS EM  FVNSGT+AC
Sbjct:    3 NTTIKTTKSQEIFAAAQNLMPGGVSSPVRAFKSVGGQPIVFDHVKGAYIWDVDGNQYIDYVGTWGPAICGHAHPDVIGALHDALEKGTSFGAPSFLENVLAEMVIAAVPSIEMVRFVNSGTEAC 126          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_SYNPW (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain WH7803) GN=hemL PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.596e-42
Identity = 80/116 (68.97%), Postives = 96/116 (82.76%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            S+E F+ A+ LMPGGV+SPVRAF+SVGGQP+ FD VKG + WD+DGN+YIDY+GSWGPAI G    +V++AL E ++KGTSFGAPC LEN LAEMVI AVPS EM  FVNSGT+AC
Sbjct:   11 SQELFSAAQALMPGGVSSPVRAFRSVGGQPLVFDRVKGPYAWDVDGNKYIDYIGSWGPAICGHAHPEVISALQEAIEKGTSFGAPCALENTLAEMVIDAVPSVEMVRFVNSGTEAC 126          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_TRIEI (Glutamate-1-semialdehyde 2,1-aminomutase OS=Trichodesmium erythraeum (strain IMS101) GN=hemL PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.723e-42
Identity = 81/116 (69.83%), Postives = 96/116 (82.76%), Query Frame = 2
Query:  155 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            SEE F  A++LMPGGV+SPVRAFKSVGGQPI FD V+G+++WD+DGN+YIDYVG+WGPAI G    +VL  L E ++KGTSFGAPC LEN LA+MVI AVPS EM  FVNSGT+AC
Sbjct:   11 SEEIFAAAQKLMPGGVSSPVRAFKSVGGQPIVFDRVQGAYIWDVDGNQYIDYVGTWGPAICGHAHPEVLNGLKEVLEKGTSFGAPCALENTLAKMVIDAVPSIEMIRFVNSGTEAC 126          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_SYNR3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Synechococcus sp. (strain RCC307) GN=hemL PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.723e-42
Identity = 79/121 (65.29%), Postives = 96/121 (79.34%), Query Frame = 2
Query:  140 ITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            +    S+  F  A++LMPGGVNSPVRAF+SVGGQPI FD V+G++ WD+DGN YIDY+GSWGPAI G  + +V+ AL + + KGTSFGAPC LEN LAEMVI+AVPS EM  FVNSGT+AC
Sbjct:    7 LNTSRSDALFTAAQQLMPGGVNSPVRAFRSVGGQPIVFDRVEGAYAWDVDGNRYIDYIGSWGPAICGHANPEVIEALQQALTKGTSFGAPCALENTLAEMVINAVPSVEMVRFVNSGTEAC 127          
BLAST of FC920257 vs. ExPASy Swiss-Prot
Match: GSA_PROM5 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochlorococcus marinus (strain MIT 9515) GN=hemL PE=3 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 2.723e-42
Identity = 85/122 (69.67%), Postives = 97/122 (79.51%), Query Frame = 2
Query:  137 NITLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIEFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGQPDDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSREMRCFVNSGTQAC 502
            NIT  +SEE F+ A +LMPGGV+SPVRAFKSVGGQPI FD VKG   WD+DGN YIDY+GSWGPAI G    +V+ AL E ++KGTSFGAPC+ EN LAEMVI AVPS EM  FVNSGT+AC
Sbjct:    6 NIT--HSEEVFSSALKLMPGGVSSPVRAFKSVGGQPIVFDRVKGPFAWDVDGNRYIDYIGSWGPAICGHAHPEVITALQEAIEKGTSFGAPCVQENKLAEMVIDAVPSVEMVRFVNSGTEAC 125          
The following BLAST results are available for this feature:
BLAST of FC920257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_CYAP44.201e-4371.55Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanot... [more]
GSA_PROMS5.486e-4372.41Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]
GSA_ANAVT5.486e-4368.55Glutamate-1-semialdehyde 2,1-aminomutase OS=Anabae... [more]
GSA_SYNSC9.358e-4370.09Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_CYAP81.222e-4270.69Glutamate-1-semialdehyde 2,1-aminomutase OS=Cyanot... [more]
GSA_ANASP1.222e-4267.74Glutamate-1-semialdehyde 2,1-aminomutase OS=Anabae... [more]
GSA_SYNPW1.596e-4268.97Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_TRIEI2.723e-4269.83Glutamate-1-semialdehyde 2,1-aminomutase OS=Tricho... [more]
GSA_SYNR32.723e-4265.29Glutamate-1-semialdehyde 2,1-aminomutase OS=Synech... [more]
GSA_PROM52.723e-4269.67Glutamate-1-semialdehyde 2,1-aminomutase OS=Prochl... [more]

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Properties
Property NameValue
Genbank descriptionC32006A03EF RVDevelop1 Citrus clementina cDNA clone C32006A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920257 ID=FC920257; Name=FC920257; organism=Citrus clementina; type=EST; length=502bp
GGCAGCTACAATTACAGGGGTAGGAGTTGGGTTAGGGTTTTCATGTTCAT
CAAAGCTCACCAAGAGAATTTCTTCTTCTACTGGATCCTCTCGCTGTAGT
GTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGAAAAATATCACTTTAAA
AAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAATTGATGCCTGGAGGTG
TAAATTCACCTGTACGTGCCTTCAAATCTGTTGGTGGTCAACCTATTGAG
TTTGATTCCGTCAAGGGCTCACACATGTGGGATATCGATGGCAACGAGTA
CATTGACTATGTAGGTTCTTGGGGGCCGGCAATTATTGGTCAGCCAGATG
ATCAGGTACTAGCAGCCTTGGGTGAAACAATGAAGAAAGGAACCAGCTTT
GGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAGAAATGGTAATCTCAGC
TGTTCCAAGCAGAGAAATGCGTTGTTTTGTTAACTCAGGCACACAAGCAT
GC
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